Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Forward (+)

62021161 .. 62023775

Gene Structure 2615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACTCAAACCCTAACTGTTCGAACTGCGCTCCATTTGGAGAGAATCAGCTGGATCCGAACTCCATGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCGTCGTCGCTGAGAATGATATCGCCAGAAACAGCTGCTGGTGGTGGTGGTGGTTCAAGTAGTGCAACATCAAGAAATTCCAGCACTAATATGCAAAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGATTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGCTGGGTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCATTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

193

Amino Acids

21.4

Weight (kDa)

6.06

Isoelectric Point (pI)

43.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	99 - 156	3.9e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	534
AclWI	GGATC	4 cut(s)	50, 63, 518, 531
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	70, 205
AfaI	GTAC	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	186, 307, 496
AhlI	ACTAGT	1 cut(s)	508
AluBI	AGCT	6 cut(s)	52, 164, 283, 429, 487, 554
AluI	AGCT	6 cut(s)	52, 164, 283, 429, 487, 554
Alw21I	GWGCWC	1 cut(s)	374
AlwI	GGATC	4 cut(s)	50, 63, 518, 531
AlwNI	CAGNNNCTG	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	3 cut(s)	164, 484, 503
ApoI	RAATTY	2 cut(s)	70, 205
AspLEI	GCGC	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	252
BamHI	GGATCC	2 cut(s)	55, 523
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	151, 490, 496
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	337
BclI	TGATCA	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	1 cut(s)	509
BisI	GCNGC	3 cut(s)	165, 485, 504
BlsI	GCNGC	3 cut(s)	166, 486, 505
BmeT110I	CYCGRG	1 cut(s)	424
BmiI	GGNNCC	2 cut(s)	57, 525
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	305
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	358
BsaBI	GATNNNNATC	2 cut(s)	120, 522
Bse8I	GATNNNNATC	2 cut(s)	120, 522
BseGI	GGATG	2 cut(s)	301, 523
BseJI	GATNNNNATC	2 cut(s)	120, 522
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	151, 490, 496
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	2 cut(s)	489, 503
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	424
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	4 cut(s)	55, 118, 288, 523
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	57, 525
BspPI	GGATC	4 cut(s)	50, 63, 518, 531
BspT104I	TTCGAA	1 cut(s)	23
BssMI	GATC	4 cut(s)	55, 118, 288, 523
Bst4CI	ACNGT	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	392
BstBI	TTCGAA	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	301, 523
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	58, 121, 291, 526
BstMBI	GATC	4 cut(s)	55, 118, 288, 523
BstV1I	GCAGC	3 cut(s)	151, 490, 496
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	55, 523
BstYI	RGATCY	2 cut(s)	55, 523
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	301, 523
CaiI	CAGNNNCTG	1 cut(s)	167
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	5 cut(s)	67, 97, 248, 292, 464
CviJI	RGCY	8 cut(s)	52, 164, 252, 283, 345, 429, 487, 554
CviKI_1	RGCY	8 cut(s)	52, 164, 252, 283, 345, 429, 487, 554
CviQI	GTAC	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	57, 120, 290, 525
DpnII	GATC	4 cut(s)	55, 118, 288, 523
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	5 cut(s)	70, 100, 251, 295, 467
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	5 cut(s)	66, 96, 247, 291, 463
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	165, 485, 504
FokI	GGATG	2 cut(s)	308, 530
Fsp4HI	GCNGC	3 cut(s)	165, 485, 504
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	3 cut(s)	165, 485, 504
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	70, 100, 251, 295, 467
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	5 cut(s)	5, 46, 128, 303, 422
Hpy188I	TCNGA	3 cut(s)	60, 88, 280
Hpy188III	TCNNGA	4 cut(s)	125, 201, 337, 464
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	534
HpyCH4V	TGCA	6 cut(s)	194, 223, 263, 457, 484, 506
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	70, 100, 251, 295, 467
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	55, 118, 288, 523
LmnI	GCTCC	2 cut(s)	37, 492
LpnPI	CCDG	9 cut(s)	38, 110, 153, 168, 223, 269, 366, 367, 513
Lsp1109I	GCAGC	3 cut(s)	151, 490, 496
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	534
MalI	GATC	4 cut(s)	57, 120, 290, 525
MboI	GATC	4 cut(s)	55, 118, 288, 523
MboII	GAAGA	5 cut(s)	409, 431, 549, 558, 567
MflI	RGATCY	2 cut(s)	55, 523
MhlI	GDGCHC	1 cut(s)	374
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	4 cut(s)	70, 205, 358, 475
MluNI	TGGCCA	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	3 cut(s)	306, 402, 442
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MslI	CAYNNNNRTG	2 cut(s)	218, 462
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	52, 164
Mva1269I	GAATGC	1 cut(s)	459
NdeII	GATC	4 cut(s)	55, 118, 288, 523
NlaIII	CATG	5 cut(s)	70, 100, 251, 295, 467
NlaIV	GGNNCC	2 cut(s)	57, 525
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	424
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	3 cut(s)	46, 128, 303
PkrI	GCNGC	3 cut(s)	166, 486, 505
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	2 cut(s)	57, 525
PspXI	VCTCGAGB	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	55, 523
PvuII	CAGCTG	2 cut(s)	52, 164
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	218, 462
SatI	GCNGC	3 cut(s)	165, 485, 504
Sau3AI	GATC	4 cut(s)	55, 118, 288, 523
SchI	GAGTC	1 cut(s)	416
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	7 cut(s)	54, 166, 285, 431, 489, 537, 556
Sfr274I	CTCGAG	1 cut(s)	424
SfuI	TTCGAA	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	218, 462
SmlI	CTYRAG	2 cut(s)	373, 424
SmoI	CTYRAG	2 cut(s)	373, 424
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	4 cut(s)	70, 205, 358, 475
SspMI	CTAG	1 cut(s)	509
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	537
TaqI	TCGA	4 cut(s)	23, 75, 102, 425
TaqII	GACCGA	1 cut(s)	322
TasI	AATT	4 cut(s)	70, 205, 358, 475
TfiI	GAWTC	3 cut(s)	46, 128, 303
TseI	GCWGC	3 cut(s)	164, 484, 503
TspDTI	ATGAA	2 cut(s)	83, 567
XapI	RAATTY	2 cut(s)	70, 205
XhoI	CTCGAG	1 cut(s)	424
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.