Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

30423147 .. 30425436

Gene Structure 2290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG273700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACTCAAACCCTAGCTGGTCGAACTGCTCTCCATTTGGAGAGAATCAGCTAGATCCGAACTCCATGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCGTCGTCGCTGAGAATGATATCGCCAGAAACATGTCATAGTACTGCTGCTGCTGCTGCTGCTGGTTCAAGTGGTGCAACATCAAGAAATTCCAGCACTAATATAAATGCGGCGACAATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGTTTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAATTACTACAAGTGCTCAAGTGCTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCAGTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

202

Amino Acids

22.39

Weight (kDa)

6.3

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	108 - 165	4.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	3 cut(s)	50, 545, 558
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	70, 217
AfaI	GTAC	2 cut(s)	172, 347
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	198, 334, 523
AhlI	ACTAGT	1 cut(s)	535
AluBI	AGCT	6 cut(s)	18, 52, 310, 456, 514, 581
AluI	AGCT	6 cut(s)	18, 52, 310, 456, 514, 581
Alw21I	GWGCWC	1 cut(s)	401
AlwI	GGATC	3 cut(s)	50, 545, 558
Ama87I	CYCGRG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	8 cut(s)	176, 179, 182, 185, 188, 411, 511, 530
ApoI	RAATTY	2 cut(s)	70, 217
AvaI	CYCGRG	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	279
BamHI	GGATCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	1 cut(s)	364
BclI	TGATCA	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	3 cut(s)	15, 53, 536
BisI	GCNGC	9 cut(s)	177, 180, 183, 186, 189, 240, 412, 512, 531
BlsI	GCNGC	9 cut(s)	178, 181, 184, 187, 190, 241, 413, 513, 532
BmcAI	AGTACT	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	552
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	2 cut(s)	332, 500
BpuEI	CTTGAG	1 cut(s)	385
BsaBI	GATNNNNATC	2 cut(s)	120, 549
Bse1I	ACTGG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	120, 549
BseGI	GGATG	2 cut(s)	328, 550
BseJI	GATNNNNATC	2 cut(s)	120, 549
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BsgI	GTGCAG	2 cut(s)	516, 530
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	451
BslFI	GGGAC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	451
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	55, 118, 315, 550
BspACI	CCGC	1 cut(s)	239
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	1 cut(s)	552
BspPI	GGATC	3 cut(s)	50, 545, 558
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	4 cut(s)	55, 118, 315, 550
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	328, 550
BstKTI	GATC	4 cut(s)	58, 121, 318, 553
BstMBI	GATC	4 cut(s)	55, 118, 315, 550
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
BstNSI	RCATGY	1 cut(s)	165
BstV1I	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	2 cut(s)	55, 550
BstYI	RGATCY	2 cut(s)	55, 550
BsuRI	GGCC	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	328, 550
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	171, 346
CviAII	CATG	6 cut(s)	67, 97, 162, 275, 319, 491
CviJI	RGCY	9 cut(s)	18, 52, 279, 310, 372, 411, 456, 514, 581
CviKI_1	RGCY	9 cut(s)	18, 52, 279, 310, 372, 411, 456, 514, 581
CviQI	GTAC	2 cut(s)	171, 346
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	4 cut(s)	57, 120, 317, 552
DpnII	GATC	4 cut(s)	55, 118, 315, 550
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	66, 96, 161, 274, 318, 490
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	9 cut(s)	177, 180, 183, 186, 189, 240, 412, 512, 531
FokI	GGATG	2 cut(s)	335, 557
Fsp4HI	GCNGC	9 cut(s)	177, 180, 183, 186, 189, 240, 412, 512, 531
FspBI	CTAG	3 cut(s)	15, 53, 536
GluI	GCNGC	9 cut(s)	177, 180, 183, 186, 189, 240, 412, 512, 531
GsuI	CTGGAG	2 cut(s)	332, 500
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
HinfI	GANTC	4 cut(s)	5, 46, 128, 449
Hpy188I	TCNGA	3 cut(s)	60, 88, 307
Hpy188III	TCNNGA	4 cut(s)	125, 213, 364, 491
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	206, 290, 484, 511, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	55, 118, 315, 550
LmnI	GCTCC	1 cut(s)	519
Lsp1109I	GCAGC	8 cut(s)	163, 166, 169, 172, 175, 398, 517, 523
MaeI	CTAG	3 cut(s)	15, 53, 536
MaeII	ACGT	1 cut(s)	561
MalI	GATC	4 cut(s)	57, 120, 317, 552
MboI	GATC	4 cut(s)	55, 118, 315, 550
MboII	GAAGA	6 cut(s)	262, 436, 458, 576, 585, 594
MflI	RGATCY	2 cut(s)	55, 550
MhlI	GDGCHC	1 cut(s)	401
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	4 cut(s)	70, 217, 385, 502
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	3 cut(s)	333, 429, 469
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	182, 185, 188
NdeII	GATC	4 cut(s)	55, 118, 315, 550
NlaIII	CATG	6 cut(s)	70, 100, 165, 278, 322, 494
NlaIV	GGNNCC	1 cut(s)	552
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	451
PagI	TCATGA	1 cut(s)	490
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	46, 128
PkrI	GCNGC	9 cut(s)	178, 181, 184, 187, 190, 241, 413, 513, 532
PleI	GAGTC	1 cut(s)	443
PpsI	GAGTC	1 cut(s)	443
PscI	ACATGT	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	552
PspXI	VCTCGAGB	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	55, 550
RsaI	GTAC	2 cut(s)	172, 347
RsaNI	GTAC	2 cut(s)	171, 346
RseI	CAYNNNNRTG	1 cut(s)	489
SatI	GCNGC	9 cut(s)	177, 180, 183, 186, 189, 240, 412, 512, 531
Sau3AI	GATC	4 cut(s)	55, 118, 315, 550
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	7 cut(s)	20, 54, 312, 458, 516, 564, 583
Sfr274I	CTCGAG	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	400, 451
SmoI	CTYRAG	2 cut(s)	400, 451
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	4 cut(s)	70, 217, 385, 502
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	3 cut(s)	15, 53, 536
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	23, 75, 102, 452
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	4 cut(s)	70, 217, 385, 502
TatI	WGTACW	1 cut(s)	170
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	46, 128
TseI	GCWGC	8 cut(s)	176, 179, 182, 185, 188, 411, 511, 530
TspDTI	ATGAA	3 cut(s)	83, 263, 594
XapI	RAATTY	2 cut(s)	70, 217
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	451
XspI	CTAG	3 cut(s)	15, 53, 536
ZrmI	AGTACT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.