Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

28441320 .. 28443596

Gene Structure 2277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018333

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGACTCAAACCCTAGCTGGTCGAACTCCGCTCCATTTGGAGAGAATCAGCTGGATCCGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCATCGTCGCTGAGAATGATATCGCCAGAAACATGTCATAGTACTGCTGCTGCTGCTGCTGCTGCTGCTGGTTCAAGTAGTGCAACACCAAGAAATTCCAGCACTAATATAAATGCGGCGGCAATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGATTCAAGTGGAGAAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAACCCCAGAAATTACTACAAATGCTCAAGTGCTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCATTTCAATCCTGCTGCACTAGTAGTGGATGTGGATCCCAACAACGTTTGGACTACTTTACGACCTTCTTCGCAATCTTCTGCTTCGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

202

Amino Acids

22.21

Weight (kDa)

6.37

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	107 - 164	4.2e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	32
AciI	CCGC	3 cut(s)	30, 236, 239
AclI	AACGTT	1 cut(s)	558
AclWI	GGATC	4 cut(s)	50, 63, 542, 555
AcoI	YGGCCR	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	61, 214
AfaI	GTAC	2 cut(s)	163, 344
AflIII	ACRYGT	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	195, 331, 520
AhlI	ACTAGT	1 cut(s)	532
AluBI	AGCT	5 cut(s)	18, 52, 307, 453, 511
AluI	AGCT	5 cut(s)	18, 52, 307, 453, 511
AlwI	GGATC	4 cut(s)	50, 63, 542, 555
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	61, 214
AvaI	CYCGRG	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	276
BamHI	GGATCC	2 cut(s)	55, 547
BbsI	GAAGAC	1 cut(s)	450
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	361
BclI	TGATCA	1 cut(s)	109
BcuI	ACTAGT	1 cut(s)	532
BfaI	CTAG	2 cut(s)	15, 533
BmcAI	AGTACT	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	57, 549
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	382
BsaBI	GATNNNNATC	2 cut(s)	111, 546
Bse3DI	GCAATG	1 cut(s)	249
Bse8I	GATNNNNATC	2 cut(s)	111, 546
BseGI	GGATG	2 cut(s)	325, 547
BseJI	GATNNNNATC	2 cut(s)	111, 546
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	1 cut(s)	122
BsgI	GTGCAG	2 cut(s)	513, 527
BshFI	GGCC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	448
BslFI	GGGAC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	276
BsoBI	CYCGRG	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	55, 109, 312, 547
BspACI	CCGC	3 cut(s)	30, 236, 239
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	57, 549
BspPI	GGATC	4 cut(s)	50, 63, 542, 555
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	249
BssMI	GATC	4 cut(s)	55, 109, 312, 547
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	325, 547
BstKTI	GATC	4 cut(s)	58, 112, 315, 550
BstMBI	GATC	4 cut(s)	55, 109, 312, 547
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 176, 179, 182, 185
BstNSI	RCATGY	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	2 cut(s)	55, 547
BstYI	RGATCY	2 cut(s)	55, 547
BsuRI	GGCC	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	325, 547
Cac8I	GCNNGC	1 cut(s)	406
CciI	TCATGA	1 cut(s)	487
Csp6I	GTAC	2 cut(s)	162, 343
CviAII	CATG	5 cut(s)	88, 153, 272, 316, 488
CviJI	RGCY	8 cut(s)	18, 52, 276, 307, 369, 408, 453, 511
CviKI_1	RGCY	8 cut(s)	18, 52, 276, 307, 369, 408, 453, 511
CviQI	GTAC	2 cut(s)	162, 343
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	4 cut(s)	57, 111, 314, 549
DpnII	GATC	4 cut(s)	55, 109, 312, 547
EaeI	YGGCCR	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	141
FaeI	CATG	5 cut(s)	91, 156, 275, 319, 491
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	5 cut(s)	87, 152, 271, 315, 487
FbaI	TGATCA	1 cut(s)	109
FokI	GGATG	2 cut(s)	332, 554
FspBI	CTAG	2 cut(s)	15, 533
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	91, 156, 275, 319, 491
HinfI	GANTC	5 cut(s)	5, 46, 119, 327, 446
Hpy188I	TCNGA	3 cut(s)	60, 79, 304
Hpy188III	TCNNGA	3 cut(s)	116, 361, 488
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	257, 588
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	5 cut(s)	203, 287, 481, 508, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 176, 179, 182, 185
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	5 cut(s)	91, 156, 275, 319, 491
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	55, 109, 312, 547
LmnI	GCTCC	2 cut(s)	37, 516
MaeI	CTAG	2 cut(s)	15, 533
MaeII	ACGT	1 cut(s)	558
MalI	GATC	4 cut(s)	57, 111, 314, 549
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	4 cut(s)	55, 109, 312, 547
MboII	GAAGA	5 cut(s)	259, 433, 455, 573, 582
MflI	RGATCY	2 cut(s)	55, 547
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	61, 214, 382, 499
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	440
MnlI	CCTC	2 cut(s)	426, 466
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	483
MwoI	GCNNNNNNNGC	5 cut(s)	173, 176, 179, 182, 185
NdeII	GATC	4 cut(s)	55, 109, 312, 547
NlaIII	CATG	5 cut(s)	91, 156, 275, 319, 491
NlaIV	GGNNCC	2 cut(s)	57, 549
NspI	RCATGY	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	448
PagI	TCATGA	1 cut(s)	487
PciI	ACATGT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	46, 119, 327
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PscI	ACATGT	1 cut(s)	152
Psp1406I	AACGTT	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	57, 549
PspXI	VCTCGAGB	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	55, 547
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	163, 344
RsaNI	GTAC	2 cut(s)	162, 343
RseI	CAYNNNNRTG	1 cut(s)	486
Sau3AI	GATC	4 cut(s)	55, 109, 312, 547
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	440
SetI	ASST	7 cut(s)	20, 54, 309, 455, 513, 561, 580
Sfr274I	CTCGAG	1 cut(s)	448
SlaI	CTCGAG	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	397, 448
SmoI	CTYRAG	2 cut(s)	397, 448
SpeI	ACTAGT	1 cut(s)	532
Sse9I	AATT	4 cut(s)	61, 214, 382, 499
SsiI	CCGC	3 cut(s)	30, 236, 239
SspMI	CTAG	2 cut(s)	15, 533
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	4 cut(s)	23, 66, 93, 449
TaqII	GACCGA	1 cut(s)	346
TasI	AATT	4 cut(s)	61, 214, 382, 499
TatI	WGTACW	1 cut(s)	161
TauI	GCSGC	2 cut(s)	239, 242
TfiI	GAWTC	3 cut(s)	46, 119, 327
TspDTI	ATGAA	2 cut(s)	111, 260
XapI	RAATTY	2 cut(s)	61, 214
XceI	RCATGY	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	448
XspI	CTAG	2 cut(s)	15, 533
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.