Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013970

Physical Location & Seq

Genomic Coordinates Reverse (-)

28860176 .. 28862482

Gene Structure 2307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G021040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGACTCAAACCCTAGCTGGTCGAACTGCGCTCCATTTGGAGAGAATCAGCTGGATCCGAACTCCATGAATTTCGATGAGTTATCGGAATATCTCATGCTCGATTATAGGGTTGATGATCATCAGGATTCGTCGTCGCTGAGAATGATATCGCCAGAAACATGTCATCGTACTGCTGCTGCTGCTGCTGCTGCTGCTGGTTCAAGTAGTGCAACATCAGGAAATTCCAGCACTAATATAAATGCGGCGACAATGAAGAATAGCAAGAGAGAAGGGGGTCATGGCCATAGGGTTGCATTTAGAACGAAATCAGAGCTGGAGATCATGGATGATGGTTTCAAGTGGAGGAAGTACGGCAAGAAGTCGGTCAAGAACAGCCCAAATCCCAGAAACTACTACAAGTGCTCAAGTGCTGGCTGCGATGTAAAGAAGAGAGTAGAGAGGGACAGAGAAGACTCGAGCTATGTGATTACCACATACGAGGGAATGCACAATCATGATACCCCTAATTGTGTGCAGCTCCATTTCAATCCTACTGCACTAGTAGTGGATGTGGAACCCAACAACGTTTGGACTACTTTACGAGCTTCTTCGCAATCTTCTGCTTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0042742 GO:0043207 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0098542 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

204

Amino Acids

22.57

Weight (kDa)

6.37

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	110 - 167	4.3e-25	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64810
fragaria_vesca	FvH4_1g22820 FvH4_1g22820 FvH4_1g22820
malus_domestica	MD15G1331300.v1.1
prunus_persica	Prupe.6G169700_v2.0.a1
pyrus_communis	pycom15g29370
rosa_chinensis	RchiOBHm_Chr2g0117181
rosa_laevigata	RLG00000018333
rosa_multiflora	Rmu_sc0004602.1_g000048
rosa_roxburghii	Rroxscaffold_2G00126680
rosa_rugosa	Rorug02G0210700
rosa_samantha	Rh2AG266700 Rh2BG278900 Rh2DG273700 Rh2DG292900
rosa_wichuraiana	Rw2G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	2 cut(s)	50, 63
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	70, 223
AfaI	GTAC	2 cut(s)	172, 353
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	204, 340, 529
AhlI	ACTAGT	1 cut(s)	541
AluBI	AGCT	6 cut(s)	18, 52, 316, 462, 520, 587
AluI	AGCT	6 cut(s)	18, 52, 316, 462, 520, 587
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	50, 63
Ama87I	CYCGRG	1 cut(s)	457
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	9 cut(s)	176, 179, 182, 185, 188, 191, 194, 417, 517
ApoI	RAATTY	2 cut(s)	70, 223
AspLEI	GCGC	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	457
BalI	TGGCCA	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 181, 404, 529
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	370
BclI	TGATCA	1 cut(s)	118
BcuI	ACTAGT	1 cut(s)	541
BfaI	CTAG	2 cut(s)	15, 542
BmeT110I	CYCGRG	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	57, 558
BpiI	GAAGAC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	120
BseGI	GGATG	2 cut(s)	334, 556
BseJI	GATNNNNATC	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 181, 404, 529
BsgI	GTGCAG	2 cut(s)	522, 536
BshFI	GGCC	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	407
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	285
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	55, 118, 321
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	57, 558
BspPI	GGATC	2 cut(s)	50, 63
BssMI	GATC	3 cut(s)	55, 118, 321
Bst6I	CTCTTC	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	334, 556
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	58, 121, 324
BstMBI	GATC	3 cut(s)	55, 118, 321
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 185, 188, 191, 194
BstNSI	RCATGY	1 cut(s)	165
BstV1I	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 181, 404, 529
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	334, 556
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	171, 352
CviAII	CATG	6 cut(s)	67, 97, 162, 281, 325, 497
CviJI	RGCY	9 cut(s)	18, 52, 285, 316, 378, 417, 462, 520, 587
CviKI_1	RGCY	9 cut(s)	18, 52, 285, 316, 378, 417, 462, 520, 587
CviQI	GTAC	2 cut(s)	171, 352
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	3 cut(s)	57, 120, 323
DpnII	GATC	3 cut(s)	55, 118, 321
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	150
FaeI	CATG	6 cut(s)	70, 100, 165, 284, 328, 500
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	6 cut(s)	66, 96, 161, 280, 324, 496
FbaI	TGATCA	1 cut(s)	118
FokI	GGATG	2 cut(s)	341, 563
FspBI	CTAG	2 cut(s)	15, 542
GlaI	GCGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	338
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	70, 100, 165, 284, 328, 500
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	5, 46, 128, 455
Hpy188I	TCNGA	3 cut(s)	60, 88, 313
Hpy188III	TCNNGA	4 cut(s)	125, 219, 370, 497
Hpy99I	CGWCG	2 cut(s)	136, 139
HpyAV	CCTTC	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	5 cut(s)	212, 296, 490, 517, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 185, 188, 191, 194
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	6 cut(s)	70, 100, 165, 284, 328, 500
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	55, 118, 321
LmnI	GCTCC	2 cut(s)	37, 525
Lsp1109I	GCAGC	9 cut(s)	163, 166, 169, 172, 175, 178, 181, 404, 529
MaeI	CTAG	2 cut(s)	15, 542
MaeII	ACGT	1 cut(s)	567
MalI	GATC	3 cut(s)	57, 120, 323
MboI	GATC	3 cut(s)	55, 118, 321
MboII	GAAGA	6 cut(s)	268, 442, 464, 582, 591, 600
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	407
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	3 cut(s)	70, 223, 508
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	3 cut(s)	339, 435, 475
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	495
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	492
MwoI	GCNNNNNNNGC	5 cut(s)	182, 185, 188, 191, 194
NdeII	GATC	3 cut(s)	55, 118, 321
NlaIII	CATG	6 cut(s)	70, 100, 165, 284, 328, 500
NlaIV	GGNNCC	2 cut(s)	57, 558
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	46, 128
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PscI	ACATGT	1 cut(s)	161
Psp1406I	AACGTT	1 cut(s)	567
PspN4I	GGNNCC	2 cut(s)	57, 558
PspXI	VCTCGAGB	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	55
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	172, 353
RsaNI	GTAC	2 cut(s)	171, 352
RseI	CAYNNNNRTG	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	55, 118, 321
SchI	GAGTC	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	7 cut(s)	20, 54, 318, 464, 522, 570, 589
Sfr274I	CTCGAG	1 cut(s)	457
SlaI	CTCGAG	1 cut(s)	457
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	406, 457
SmoI	CTYRAG	2 cut(s)	406, 457
SpeI	ACTAGT	1 cut(s)	541
Sse9I	AATT	3 cut(s)	70, 223, 508
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	15, 542
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	4 cut(s)	23, 75, 102, 458
TaqII	GACCGA	1 cut(s)	355
TasI	AATT	3 cut(s)	70, 223, 508
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	46, 128
TseI	GCWGC	9 cut(s)	176, 179, 182, 185, 188, 191, 194, 417, 517
TspDTI	ATGAA	3 cut(s)	83, 269, 600
XapI	RAATTY	2 cut(s)	70, 223
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	457
XspI	CTAG	2 cut(s)	15, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.