Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006140

Physical Location & Seq

Genomic Coordinates Reverse (-)

25914567 .. 25916652

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTCGGAATTCTTCTGGGGTTGCCTGGGAAGTGGGCAGAAGATGAGCTTGAGCCTTCTGATCACTACACAACCAAAATCGGTGGTCTTCCGGATTGGCCGCCAATACCCGATGATGCACTGAAACCAGAACTACTCAATTGTTGTTCATGTGGAAGTAAACTTTCTCTCGTAGCTCAGGTGTATGCCCCAATCTCAACTGAAATTTTAGACATCCAAGAGCGTACCCTCTATATATTTGGTTGCTTGATGCCTAAATGTGGAACCTCTGAACAAAGTTGGAGAGCTTTTAGCATTCAGAAAGCTATAGCAAAAGAGAAAGGATCAACTAAAATAGCGGATTTGCCTGTGGCCTTTCCTAAAACACATCGGTTAGACGGTGATGATGATGATGATGATGATGATGATGAAGATTTTGATTTTGCGAGTTTAGCTAAGGCGCTGGCAGAGGCTTCTTCTGCTGCGGCTTCCATTACGAAGAAACAAAAGAGTAAACCAAGTGGCAATGCTAGTTCAGGGACTAAAGCAAAGCCTTCACCTTTGAAATCTGAAACAAGAGTTGAGGATCATATTAAACTTGAGACTGGTGCGGTGGTTCCGTGCTTCTACATTTATACAAAGGAAGAGATCCCCTCAAAAGAAGTTGATCGATTCTCACAGAATTATTCGTCTCTGTCTATTAAGGATAAAGGAACCGGCAACAATGATGAGAGTGAATCCGAAGAAAAGTGGGAGGATGAGAAATATGAATATGACAAAGCCCTGAATGCAGATAGGACTTATCTTAAGTTCAAAAAACGGCTAGATGCAAATCCGGAACAATGTTTCAGGTACTGGTATGGCGGTAAGCCGATACTAGCCACAGAAGACATGAAATCTCCGGATAAATGCAGGAACTGCGACTCTCAAAGGCACTTTGAGATACAACTCATGCCTCCATTAATATATTTTCTACATGAAGGTGTTGTTGATAAAGGAATTAAGCAATCATTGGATAATTGGGATTGGATGACACTTATTGTCTACACTTGTTCCAAGAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTTGCAGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C

Protein Analysis

380

Amino Acids

42.66

Weight (kDa)

4.89

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64830 AT5G64830 AT5G64830
fragaria_vesca	FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740
malus_domestica	MD15G1331600.v1.1
prunus_persica	Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1
pyrus_communis	pycom15g29340
rosa_chinensis	RchiOBHm_Chr2g0117041
rosa_laevigata	RLG00000018321
rosa_multiflora	Rmu_ssc0000238.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126800
rosa_rugosa	Rorug02G0209700
rosa_samantha	Rh2AG265600 Rh2BG277400 Rh2DG272900 Rh2DG291900
rosa_wichuraiana	Rw0G019120 Rw2G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1023
AccIII	TCCGGA	3 cut(s)	91, 814, 880
AciI	CCGC	5 cut(s)	101, 338, 464, 590, 843
AclWI	GGATC	3 cut(s)	331, 573, 622
AcoI	YGGCCR	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	9, 204
AfaI	GTAC	3 cut(s)	226, 833, 1095
AfiI	CCNNNNNNNGG	1 cut(s)	260
AflII	CTTAAG	1 cut(s)	785
AgsI	TTSAA	3 cut(s)	544, 793, 1138
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	7 cut(s)	49, 176, 287, 305, 434, 1041, 1131
AluI	AGCT	7 cut(s)	49, 176, 287, 305, 434, 1041, 1131
Alw26I	GTCTC	2 cut(s)	575, 675
AlwI	GGATC	3 cut(s)	331, 573, 622
AlwNI	CAGNNNCTG	2 cut(s)	834, 897
Aor13HI	TCCGGA	3 cut(s)	91, 814, 880
AoxI	GGCC	2 cut(s)	98, 351
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	2 cut(s)	9, 204
AseI	ATTAAT	1 cut(s)	941
AspLEI	GCGC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	392, 528
AsuNHI	GCTAGC	1 cut(s)	1127
BbsI	GAAGAC	2 cut(s)	80, 873
BbvI	GCAGC	1 cut(s)	448
BceAI	ACGGC	1 cut(s)	815
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	2 cut(s)	61, 1120
BcoDI	GTCTC	2 cut(s)	575, 675
BfaI	CTAG	4 cut(s)	510, 803, 857, 1128
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	443
BfrI	CTTAAG	1 cut(s)	785
BisI	GCNGC	3 cut(s)	101, 462, 465
BlsI	GCNGC	3 cut(s)	102, 463, 466
Bme1390I	CCNGG	1 cut(s)	27
BmiI	GGNNCC	3 cut(s)	265, 597, 694
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	3 cut(s)	106, 240, 796
BmtI	GCTAGC	1 cut(s)	1131
BpiI	GAAGAC	2 cut(s)	80, 873
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
Bpu10I	CCTNAGC	2 cut(s)	177, 435
BpuEI	CTTGAG	2 cut(s)	71, 599
Bsa29I	ATCGAT	1 cut(s)	649
BsaBI	GATNNNNATC	1 cut(s)	810
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	3 cut(s)	91, 814, 880
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	2 cut(s)	589, 839
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	1 cut(s)	810
BseAI	TCCGGA	3 cut(s)	91, 814, 880
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	649
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	3 cut(s)	213, 742, 1014
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	191, 1068
BseNI	ACTGG	2 cut(s)	589, 839
BseRI	GAGGAG	1 cut(s)	1094
BseXI	GCAGC	1 cut(s)	448
BshFI	GGCC	2 cut(s)	100, 353
BshVI	ATCGAT	1 cut(s)	649
BsiSI	CCGG	4 cut(s)	92, 696, 815, 881
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	575, 675
BsmBI	CGTCTC	1 cut(s)	675
BsmFI	GGGAC	1 cut(s)	532
BsmI	GAATGC	2 cut(s)	294, 772
BsnI	GGCC	2 cut(s)	100, 353
Bsp13I	TCCGGA	3 cut(s)	91, 814, 880
Bsp143I	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
BspACI	CCGC	5 cut(s)	101, 338, 464, 590, 843
BspANI	GGCC	2 cut(s)	100, 353
BspCNI	CTCAG	2 cut(s)	190, 1069
BspDI	ATCGAT	1 cut(s)	649
BspEI	TCCGGA	3 cut(s)	91, 814, 880
BspLI	GGNNCC	3 cut(s)	265, 597, 694
BspOI	GCTAGC	1 cut(s)	1131
BspPI	GGATC	3 cut(s)	331, 573, 622
BspTI	CTTAAG	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	589, 839
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	380, 1098
Bst6I	CTCTTC	1 cut(s)	618
BstAFI	CTTAAG	1 cut(s)	785
BstAPI	GCANNNNNTGC	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	444, 1129
BstDEI	CTNAG	3 cut(s)	177, 435, 1077
BstF5I	GGATG	3 cut(s)	213, 742, 1014
BstH2I	RGCGCY	1 cut(s)	443
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	6 cut(s)	64, 326, 568, 630, 649, 1123
BstMAI	GTCTC	2 cut(s)	575, 675
BstMBI	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 458, 767, 897
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	2 cut(s)	80, 873
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
Bsu15I	ATCGAT	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	100, 353
BsuTUI	ATCGAT	1 cut(s)	649
BtsCI	GGATG	3 cut(s)	213, 742, 1014
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	444, 1129
CaiI	CAGNNNCTG	2 cut(s)	834, 897
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	649
Csp6I	GTAC	3 cut(s)	225, 832, 1094
CspCI	CAANNNNNGTGG	2 cut(s)	64, 99
CviAII	CATG	5 cut(s)	150, 871, 931, 956, 1124
CviQI	GTAC	3 cut(s)	225, 832, 1094
DdeI	CTNAG	3 cut(s)	177, 435, 1077
DpnI	GATC	6 cut(s)	63, 325, 567, 629, 648, 1122
DpnII	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
EaeI	YGGCCR	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	25
Esp3I	CGTCTC	1 cut(s)	675
FaeI	CATG	5 cut(s)	153, 874, 934, 959, 1127
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	5 cut(s)	149, 870, 930, 955, 1123
FbaI	TGATCA	2 cut(s)	61, 1120
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	3 cut(s)	101, 462, 465
FokI	GGATG	3 cut(s)	200, 749, 1021
Fsp4HI	GCNGC	3 cut(s)	101, 462, 465
FspBI	CTAG	4 cut(s)	510, 803, 857, 1128
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	3 cut(s)	101, 462, 465
HaeII	RGCGCY	1 cut(s)	443
HaeIII	GGCC	2 cut(s)	100, 353
HapII	CCGG	4 cut(s)	92, 696, 815, 881
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	153, 874, 934, 959, 1127
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	4 cut(s)	651, 716, 902, 1114
HpaII	CCGG	4 cut(s)	92, 696, 815, 881
HphI	GGTGA	2 cut(s)	392, 528
Hpy166II	GTNNAC	3 cut(s)	161, 494, 1024
Hpy188I	TCNGA	6 cut(s)	8, 61, 271, 300, 550, 721
Hpy188III	TCNNGA	4 cut(s)	92, 815, 881, 1118
Hpy8I	GTNNAC	3 cut(s)	161, 494, 1024
HpyAV	CCTTC	3 cut(s)	66, 543, 953
HpyCH4III	ACNGT	2 cut(s)	380, 1098
HpyCH4V	TGCA	6 cut(s)	119, 770, 809, 891, 1046, 1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 458, 767, 897
HpyF3I	CTNAG	3 cut(s)	177, 435, 1077
Hsp92II	CATG	5 cut(s)	153, 874, 934, 959, 1127
HspAI	GCGC	1 cut(s)	440
Kpn2I	TCCGGA	3 cut(s)	91, 814, 880
Ksp22I	TGATCA	2 cut(s)	61, 1120
Kzo9I	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	3 cut(s)	106, 240, 796
MaeI	CTAG	4 cut(s)	510, 803, 857, 1128
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	6 cut(s)	63, 325, 567, 629, 648, 1122
MboI	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	627
MluCI	AATT	6 cut(s)	9, 139, 204, 661, 978, 997
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	8 cut(s)	239, 277, 442, 556, 643, 727, 945, 1072
MroI	TCCGGA	3 cut(s)	91, 814, 880
MseI	TTAA	5 cut(s)	573, 681, 786, 941, 981
MslI	CAYNNNNRTG	1 cut(s)	960
MspCI	CTTAAG	1 cut(s)	785
MspI	CCGG	4 cut(s)	92, 696, 815, 881
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	2 cut(s)	294, 772
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	431, 458, 767, 897
NdeII	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
NheI	GCTAGC	1 cut(s)	1127
NlaIII	CATG	5 cut(s)	153, 874, 934, 959, 1127
NlaIV	GGNNCC	3 cut(s)	265, 597, 694
PctI	GAATGC	2 cut(s)	294, 772
PfeI	GAWTC	3 cut(s)	651, 716, 1114
PkrI	GCNGC	3 cut(s)	102, 463, 466
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PshBI	ATTAAT	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	265, 597, 694
PstNI	CAGNNNCTG	2 cut(s)	834, 897
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	3 cut(s)	226, 833, 1095
RsaNI	GTAC	3 cut(s)	225, 832, 1094
RseI	CAYNNNNRTG	1 cut(s)	960
SaqAI	TTAA	5 cut(s)	573, 681, 786, 941, 981
SatI	GCNGC	3 cut(s)	101, 462, 465
Sau3AI	GATC	6 cut(s)	61, 323, 565, 627, 646, 1120
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	27
SfaNI	GCATC	3 cut(s)	106, 240, 796
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	960
SmlI	CTYRAG	3 cut(s)	50, 578, 785
SmoI	CTYRAG	3 cut(s)	50, 578, 785
Sse9I	AATT	6 cut(s)	9, 139, 204, 661, 978, 997
SsiI	CCGC	5 cut(s)	101, 338, 464, 590, 843
SspMI	CTAG	4 cut(s)	510, 803, 857, 1128
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	380, 1098
TaqI	TCGA	1 cut(s)	649
TasI	AATT	6 cut(s)	9, 139, 204, 661, 978, 997
TatI	WGTACW	1 cut(s)	1093
TauI	GCSGC	2 cut(s)	103, 467
TfiI	GAWTC	3 cut(s)	651, 716, 1114
Tru1I	TTAA	5 cut(s)	573, 681, 786, 941, 981
Tru9I	TTAA	5 cut(s)	573, 681, 786, 941, 981
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	6 cut(s)	138, 423, 762, 887, 972, 1127
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	126
Vha464I	CTTAAG	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	941
XapI	RAATTY	2 cut(s)	9, 204
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	4 cut(s)	510, 803, 857, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.