MD15G1331600.v1.1

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006140
Physical Location & Seq
Reverse (-)
36773302 .. 36777460
4159 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1331600.v1.1.491

Sequence Viewer

Length: 1110 bp
ATGCCGGGACCCTGGGCTGATGATTTTCGTGAAACATCTGATCATTATACTACAAAGATTGGCGGATTACCTGACTGGCCTCTCCCTGAGGAATCCGTCACGCCTGATCTGCTTAAGTGCAGTGCATGTGGAAGTAGATTAAGTCTTGTTGCACAGGTTTATGCCCCAATTTCCAGTAAAATCGTACAGATTGAAGAGCGTGTCATTTTTATTTTTGGGTGTCTAATGCCAAAATGTGGGAGCACTCCTCTTAGCTGGCGAGCGCTGCGTGTTCAAAAGCTACACAATGAGGAGGAACCAATTACCTCTTCTCTGGAAGTGGTCCCATCAACTTCATCAGTACCGGTTTCAAATGCCAGCTGGTGGGAGGATTTGGACGATGAAAATGATGAAGATATAAATCTAGAAGAGTTGGGTAAAGCATTTAATGATGCTGCGAGATTAGCTTCTACTGCCAAGAAACCTCATAGAAATGATCACAGTAAGACTTCTACAAAGCCATCTTCTTCAAGTCAGTTGGAAAAAGTGGCAGACGTTGACACACCTGTGGTGCCTTGTTTTTATGTATACACTCAAAAAGAGTCATCCTCAAAGGATCTTACTTCTTTATGTTCAAACTACTCATCACTTTCCATTGCAAAAGAAGGAAATGATAATGAGGATCACGGACAAGATGAAACGTGGGCTGAGGAAGCTTATGAATATGATAAAGCGTTGACAGCTGACAGGACATACCTGAAGTTCAAGAAACGGTTGGATGCACACCCAGAACAATGTTTCAGATATTCATATGGTGGAAAGCCACTCCTGGCTACATCGGCTGAAGGAGATCCGGGGAGATGTAGTCTATGTGGTGGATCAAGGAAGTACGAGATGCAACTAATGCCCCCATTATTATATTTTCTACAAGAAGCAGCTGATGATTGTCAGAGGCAGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATACACTTGTTCCAAGAGCTGTTGTCAACATGGTCAAGGAACGTCCAAGTATGGGAACTGGCTTGTGATAGATGAAGCTGTTGTGGTACAAGTCGAGAAATCTTTTAATGGGCTAGCTGAACATGGTTATTTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

370

Amino Acids

41.24

Weight (kDa)

4.87

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 242 - 354 1.2e-29 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 550
AccB7I CCANNNNNTGG 2 cut(s) 236, 363
AccI GTMKAC 2 cut(s) 567, 972
AciI CCGC 1 cut(s) 63
AclWI GGATC 4 cut(s) 603, 669, 824, 865
AcuI CTGAAG 2 cut(s) 758, 843
AfaI GTAC 4 cut(s) 186, 342, 869, 1059
AfeI AGCGCT 1 cut(s) 264
AfiI CCNNNNNNNGG 3 cut(s) 236, 363, 1023
AflII CTTAAG 1 cut(s) 113
AgeI ACCGGT 1 cut(s) 343
AgsI TTSAA 6 cut(s) 194, 275, 351, 510, 615, 745
AjnI CCWGG 2 cut(s) 11, 807
AjuI GAANNNNNNNTTGG 2 cut(s) 292, 324
AleI CACNNNNGTG 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 245
AlwI GGATC 4 cut(s) 603, 669, 824, 865
AlwNI CAGNNNCTG 1 cut(s) 940
Aor51HI AGCGCT 1 cut(s) 264
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 265, 434, 914
AsiGI ACCGGT 1 cut(s) 343
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 8, 322
AsuC2I CCSGG 2 cut(s) 6, 834
AsuNHI GCTAGC 1 cut(s) 1084
AvaII GGWCC 2 cut(s) 8, 322
AxyI CCTNAGG 1 cut(s) 87
BanI GGYRCC 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 245
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 3 cut(s) 252, 421, 926
BccI CCATC 2 cut(s) 334, 508
BciT130I CCWGG 2 cut(s) 13, 809
BclI TGATCA 2 cut(s) 40, 475
BcnI CCSGG 2 cut(s) 6, 834
BfaI CTAG 2 cut(s) 404, 1085
BfoI RGCGCY 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 3 cut(s) 266, 435, 915
BlsI GCNGC 3 cut(s) 267, 436, 916
Bme1390I CCNGG 4 cut(s) 6, 13, 809, 834
Bme18I GGWCC 2 cut(s) 8, 322
BmgT120I GGNCC 2 cut(s) 8, 322
BmiI GGNNCC 5 cut(s) 9, 10, 297, 324, 552
BmrFI CCNGG 4 cut(s) 6, 13, 809, 834
BmsI GCATC 3 cut(s) 421, 748, 864
BmtI GCTAGC 1 cut(s) 1088
BplI GAGNNNNNCTC 4 cut(s) 232, 264, 572, 604
BpmI CTGGAG 1 cut(s) 962
Bpu10I CCTNAGC 1 cut(s) 687
BpuMI CCSGG 2 cut(s) 6, 834
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 3 cut(s) 11, 12, 833
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 363, 1023
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 6 cut(s) 80, 174, 945, 953, 959, 1034
Bse21I CCTNAGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 633
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 2 cut(s) 13, 809
BseDI CCNNGG 3 cut(s) 11, 12, 833
BseGI GGATG 3 cut(s) 584, 763, 963
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 3 cut(s) 236, 363, 1023
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 2 cut(s) 78, 678
BseNI ACTGG 6 cut(s) 80, 174, 945, 953, 959, 1034
BseRI GAGGAG 2 cut(s) 237, 305
BseXI GCAGC 3 cut(s) 252, 421, 926
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 550
BshTI ACCGGT 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 3 cut(s) 5, 344, 833
BslFI GGGAC 2 cut(s) 21, 308
BslI CCNNNNNNNGG 3 cut(s) 236, 363, 1023
BsmFI GGGAC 2 cut(s) 21, 308
BsnI GGCC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
BspACI CCGC 1 cut(s) 63
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 2 cut(s) 79, 679
BspHI TCATGA 1 cut(s) 1106
BspLI GGNNCC 5 cut(s) 9, 10, 297, 324, 552
BspOI GCTAGC 1 cut(s) 1088
BspPI GGATC 4 cut(s) 603, 669, 824, 865
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 6 cut(s) 80, 174, 945, 953, 959, 1034
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 11, 12, 833
BssMI GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
BssNAI GTATAC 2 cut(s) 568, 973
Bst1107I GTATAC 2 cut(s) 568, 973
Bst2UI CCWGG 2 cut(s) 13, 809
Bst4CI ACNGT 2 cut(s) 482, 753
Bst6I CTCTTC 3 cut(s) 189, 313, 402
BstAFI CTTAAG 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 883
BstC8I GCNNGC 4 cut(s) 257, 261, 358, 1086
BstDEI CTNAG 3 cut(s) 87, 251, 687
BstF5I GGATG 3 cut(s) 584, 763, 963
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 7 cut(s) 43, 109, 478, 598, 664, 832, 860
BstMBI GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
BstMWI GCNNNNNNNGC 8 cut(s) 109, 265, 443, 452, 692, 719, 818, 883
BstNI CCWGG 2 cut(s) 13, 809
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 4 cut(s) 4, 11, 807, 832
BstV1I GCAGC 3 cut(s) 252, 421, 926
BstX2I RGATCY 2 cut(s) 595, 829
BstYI RGATCY 2 cut(s) 595, 829
BstZ17I GTATAC 2 cut(s) 568, 973
Bsu36I CCTNAGG 1 cut(s) 87
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 584, 763, 963
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 127, 938
Cac8I GCNNGC 4 cut(s) 257, 261, 358, 1086
CaiI CAGNNNCTG 1 cut(s) 940
CciI TCATGA 1 cut(s) 1106
CfoI GCGC 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 8, 322
Csp6I GTAC 4 cut(s) 185, 341, 868, 1058
CspAI ACCGGT 1 cut(s) 343
CviAII CATG 4 cut(s) 126, 1001, 1094, 1107
CviQI GTAC 4 cut(s) 185, 341, 868, 1058
DdeI CTNAG 3 cut(s) 87, 251, 687
DpnI GATC 7 cut(s) 42, 108, 477, 597, 663, 831, 859
DpnII GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
Eam1104I CTCTTC 3 cut(s) 189, 313, 402
EarI CTCTTC 3 cut(s) 189, 313, 402
EciI GGCGGA 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 8, 322
Eco47III AGCGCT 1 cut(s) 264
Eco57I CTGAAG 2 cut(s) 758, 843
Eco81I CCTNAGG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 11, 807
FaeI CATG 4 cut(s) 129, 1004, 1097, 1110
FaqI GGGAC 2 cut(s) 21, 308
FatI CATG 4 cut(s) 125, 1000, 1093, 1106
FauNDI CATATG 1 cut(s) 790
FbaI TGATCA 2 cut(s) 40, 475
FblI GTMKAC 2 cut(s) 567, 972
Fnu4HI GCNGC 3 cut(s) 266, 435, 915
FokI GGATG 3 cut(s) 571, 770, 970
Fsp4HI GCNGC 3 cut(s) 266, 435, 915
FspBI CTAG 2 cut(s) 404, 1085
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 266, 435, 915
GsuI CTGGAG 1 cut(s) 962
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 79
HapII CCGG 3 cut(s) 5, 344, 833
HhaI GCGC 1 cut(s) 265
Hin1II CATG 4 cut(s) 129, 1004, 1097, 1110
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 3 cut(s) 538, 717, 998
HindII GTYRAC 3 cut(s) 538, 717, 998
HindIII AAGCTT 1 cut(s) 693
HinfI GANTC 2 cut(s) 92, 581
HpaII CCGG 3 cut(s) 5, 344, 833
Hpy166II GTNNAC 5 cut(s) 538, 568, 717, 973, 998
Hpy188I TCNGA 3 cut(s) 40, 782, 930
Hpy188III TCNNGA 6 cut(s) 29, 314, 404, 745, 1066, 1107
Hpy8I GTNNAC 5 cut(s) 538, 568, 717, 973, 998
HpyAV CCTTC 2 cut(s) 638, 818
HpyCH4III ACNGT 2 cut(s) 482, 753
HpyCH4IV ACGT 3 cut(s) 534, 680, 1013
HpyCH4V TGCA 6 cut(s) 120, 125, 152, 638, 761, 877
HpyF10VI GCNNNNNNNGC 8 cut(s) 109, 265, 443, 452, 692, 719, 818, 883
HpyF3I CTNAG 3 cut(s) 87, 251, 687
HpySE526I ACGT 3 cut(s) 534, 680, 1013
Hsp92II CATG 4 cut(s) 129, 1004, 1097, 1110
HspAI GCGC 1 cut(s) 263
KflI GGGWCCC 1 cut(s) 8
Ksp22I TGATCA 2 cut(s) 40, 475
Kzo9I GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 3 cut(s) 252, 421, 926
LweI GCATC 3 cut(s) 421, 748, 864
MaeI CTAG 2 cut(s) 404, 1085
MaeII ACGT 3 cut(s) 534, 680, 1013
MaeIII GTNAC 2 cut(s) 97, 936
MalI GATC 7 cut(s) 42, 108, 477, 597, 663, 831, 859
MboI GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
MboII GAAGA 6 cut(s) 206, 300, 404, 419, 495, 498
MflI RGATCY 2 cut(s) 595, 829
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 2 cut(s) 168, 300
MlyI GAGTC 1 cut(s) 590
MmeI TCCRAC 2 cut(s) 498, 735
MseI TTAA 4 cut(s) 114, 140, 426, 1077
MslI CAYNNNNRTG 2 cut(s) 471, 545
MspA1I CMGCKG 3 cut(s) 360, 722, 917
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 3 cut(s) 5, 344, 833
MspR9I CCNGG 4 cut(s) 6, 13, 809, 834
MvaI CCWGG 2 cut(s) 13, 809
MwoI GCNNNNNNNGC 8 cut(s) 109, 265, 443, 452, 692, 719, 818, 883
NciI CCSGG 2 cut(s) 6, 834
NdeI CATATG 1 cut(s) 790
NdeII GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
NheI GCTAGC 1 cut(s) 1084
NlaIII CATG 4 cut(s) 129, 1004, 1097, 1110
NlaIV GGNNCC 5 cut(s) 9, 10, 297, 324, 552
NmuCI GTSAC 2 cut(s) 97, 936
NspI RCATGY 1 cut(s) 129
OliI CACNNNNGTG 1 cut(s) 545
PagI TCATGA 1 cut(s) 1106
PasI CCCWGGG 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 92
PflMI CCANNNNNTGG 2 cut(s) 236, 363
PinAI ACCGGT 1 cut(s) 343
PkrI GCNGC 3 cut(s) 267, 436, 916
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PpuMI RGGWCCY 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 11, 807
PspGI CCWGG 2 cut(s) 11, 807
PspN4I GGNNCC 5 cut(s) 9, 10, 297, 324, 552
PspPI GGNCC 2 cut(s) 8, 322
PspPPI RGGWCCY 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 940
PsuI RGATCY 2 cut(s) 595, 829
PvuII CAGCTG 3 cut(s) 360, 722, 917
RsaI GTAC 4 cut(s) 186, 342, 869, 1059
RsaNI GTAC 4 cut(s) 185, 341, 868, 1058
RseI CAYNNNNRTG 2 cut(s) 471, 545
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 4 cut(s) 114, 140, 426, 1077
SatI GCNGC 3 cut(s) 266, 435, 915
Sau3AI GATC 7 cut(s) 40, 106, 475, 595, 661, 829, 857
Sau96I GGNCC 2 cut(s) 8, 322
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 4 cut(s) 6, 13, 809, 834
SduI GDGCHC 1 cut(s) 245
SfaNI GCATC 3 cut(s) 421, 748, 864
SinI GGWCC 2 cut(s) 8, 322
SmiMI CAYNNNNRTG 2 cut(s) 471, 545
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 168, 300
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 404, 1085
StyD4I CCNGG 4 cut(s) 4, 11, 807, 832
TaaI ACNGT 2 cut(s) 482, 753
TaiI ACGT 3 cut(s) 537, 683, 1016
TaqI TCGA 1 cut(s) 1065
TasI AATT 2 cut(s) 168, 300
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 4 cut(s) 114, 140, 426, 1077
Tru9I TTAA 4 cut(s) 114, 140, 426, 1077
TscAI CASTG 2 cut(s) 127, 945
TseFI GTSAC 2 cut(s) 97, 936
TseI GCWGC 3 cut(s) 265, 434, 914
Tsp45I GTSAC 2 cut(s) 97, 936
TspDTI ATGAA 7 cut(s) 324, 396, 405, 690, 714, 777, 1059
TspGWI ACGGA 2 cut(s) 85, 681
TspRI CASTG 2 cut(s) 127, 945
Van91I CCANNNNNTGG 2 cut(s) 236, 363
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 8, 322
XbaI TCTAGA 1 cut(s) 403
XceI RCATGY 1 cut(s) 129
XmiI GTMKAC 2 cut(s) 567, 972
XspI CTAG 2 cut(s) 404, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.