Prupe.6G171600_v2.0.a1

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0006140
Physical Location & Seq
Reverse (-)
17654106 .. 17658994
4889 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G171600.2

Sequence Viewer

Length: 1122 bp
ATGGCTGCAGTCCTACTAGGGATGCCAGGACCATGGGCCGATGATTATCGTGAACAATCTGATCATTATACAACAAAAATTGGTGGACTACCTGACTGGCCTCTTCCTGAGAAATCCGTGACACCTGATCTGCTTGAGTGTAGTGCATGCGGAAGTAAACTAAGTCTTGTTGCTCAGGTTTATGCCCCAATTTCAAGTAAAAACTTAAAGATTGAAGAGCGTGTTCTTTTTGTTTTTGGTTGTCTAATGCCAAAATGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTGTCCAAAAATTACACAATAAGGACGAACCAATTGCTGCTTCTCAGGAGGTGGTCCCTTCAACTTCATCAGTATCAGCTTTAAACACCAGCTGGTGGGAGGATTGGGATGATGAAGATGTAGATCTGGAGGAGTTGGGTAAAGCACTTAATGCCGCTGCGAGCTTGGCTTCTCATGCCAAGAAACCGCATAGGAAGGATAATCGTAAGACTTCTACAATGCAATCACCTTCAAGTCAGTTGGAAAAAGTGGTAGACATTAACAAACCTGTGGTGCCTTGTTTTTATATATACACTCAAGAAGAGCCATCCTCAAAGAATCTTACTTCTTTATGTTCAAAATACTCATCACTTTCCATTGCAAAAGAAGGAAATAATGATGAGGATCATGTACAAGATGAAACGTGGGCAGAGGAAGCATATGAATATGATAAAGCTTTGACTGCTGACAGGACATACCTTAAGTTCAAGAAACGGTTGGATGCATATCCAGAACAATGTTTCAGATATTCATATGGTGGAAAGCCACTCCTGGCTTCATCAACTGAAGGAGACCCTGGGAAATGCAGGCTGTGTGGTGGATCAAGGCAGTATGAAATGCAGCTAATGCCCCCGGTATTATACTTTGTACAAGAAGCAGCTGATGATTATCAAAGACCGTCATTGGAGAACTGGAATTGGATGACACTTATGGTATATACTTGTTCCAAGAGCTGTTCTCAACATAATGAAGGAAAGTCCAGCAAGGGGAACTGGCTTGTGACAGAGGAAGCTGTTGTGGTGCAAGTAGAGAAATCTTTTCATGGGTTAGCCGAACGTGGCTATTTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

374

Amino Acids

41.84

Weight (kDa)

5.27

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 562
AccB7I CCANNNNNTGG 2 cut(s) 257, 384
AccI GTMKAC 1 cut(s) 543
AciI CCGC 3 cut(s) 150, 444, 476
AclWI GGATC 2 cut(s) 681, 877
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 2 cut(s) 681, 918
AfiI CCNNNNNNNGG 3 cut(s) 257, 384, 1035
AflII CTTAAG 1 cut(s) 749
AgsI TTSAA 6 cut(s) 195, 215, 351, 522, 627, 757
AjnI CCWGG 3 cut(s) 25, 819, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
Alw21I GWGCWC 2 cut(s) 266, 286
Alw26I GTCTC 1 cut(s) 834
AlwI GGATC 2 cut(s) 681, 877
AoxI GGCC 2 cut(s) 36, 98
ApeKI GCWGC 5 cut(s) 5, 326, 446, 889, 926
AspS9I GGNCC 3 cut(s) 29, 36, 343
AsuC2I CCSGG 1 cut(s) 902
AsuHPI GGTGA 1 cut(s) 507
AvaII GGWCC 2 cut(s) 29, 343
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 266, 286
BbvI GCAGC 4 cut(s) 313, 433, 901, 938
BccI CCATC 1 cut(s) 604
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 3 cut(s) 27, 821, 846
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 902
BcoDI GTCTC 1 cut(s) 834
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 6
BfrI CTTAAG 1 cut(s) 749
BglII AGATCT 1 cut(s) 412
BisI GCNGC 6 cut(s) 6, 327, 444, 447, 890, 927
BlsI GCNGC 6 cut(s) 7, 328, 445, 448, 891, 928
Bme1390I CCNGG 4 cut(s) 27, 821, 846, 902
Bme18I GGWCC 2 cut(s) 29, 343
BmgT120I GGNCC 3 cut(s) 29, 36, 343
BmiI GGNNCC 2 cut(s) 345, 564
BmrFI CCNGG 4 cut(s) 27, 821, 846, 902
BmsI GCATC 2 cut(s) 12, 760
BplI GAGNNNNNCTC 6 cut(s) 253, 285, 584, 616, 991, 1023
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 155, 570
BpuMI CCSGG 1 cut(s) 902
BsaBI GATNNNNATC 5 cut(s) 45, 411, 672, 774, 936
BsaI GGTCTC 1 cut(s) 834
BsaJI CCNNGG 4 cut(s) 32, 844, 845, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 384, 1035
Bse1I ACTGG 3 cut(s) 101, 965, 1046
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 5 cut(s) 45, 411, 672, 774, 936
BseBI CCWGG 3 cut(s) 27, 821, 846
BseDI CCNNGG 4 cut(s) 32, 844, 845, 900
BseGI GGATG 5 cut(s) 27, 403, 596, 775, 975
BseJI GATNNNNATC 5 cut(s) 45, 411, 672, 774, 936
BseLI CCNNNNNNNGG 3 cut(s) 257, 384, 1035
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 99, 188, 347
BseNI ACTGG 3 cut(s) 101, 965, 1046
BseRI GAGGAG 2 cut(s) 258, 434
BseXI GCAGC 4 cut(s) 313, 433, 901, 938
BshFI GGCC 2 cut(s) 38, 100
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 266, 286
BsiSI CCGG 1 cut(s) 902
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 3 cut(s) 257, 384, 1035
BsmAI GTCTC 1 cut(s) 834
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 2 cut(s) 38, 100
Bso31I GGTCTC 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 266, 286
Bsp1407I TGTACA 2 cut(s) 679, 916
Bsp143I GATC 5 cut(s) 61, 127, 412, 673, 869
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 3 cut(s) 150, 444, 476
BspANI GGCC 2 cut(s) 38, 100
BspCNI CTCAG 3 cut(s) 100, 187, 346
BspLI GGNNCC 2 cut(s) 345, 564
BspMAI CTGCAG 1 cut(s) 10
BspPI GGATC 2 cut(s) 681, 877
BspQI GCTCTTC 3 cut(s) 210, 291, 585
BspT107I GGYRCC 1 cut(s) 562
BspTI CTTAAG 1 cut(s) 749
BspTNI GGTCTC 1 cut(s) 834
BsrDI GCAATG 1 cut(s) 645
BsrGI TGTACA 2 cut(s) 679, 916
BsrI ACTGG 3 cut(s) 101, 965, 1046
BssECI CCNNGG 4 cut(s) 32, 844, 845, 900
BssMI GATC 5 cut(s) 61, 127, 412, 673, 869
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 27, 821, 846
Bst4CI ACNGT 2 cut(s) 765, 948
Bst6I CTCTTC 4 cut(s) 108, 210, 291, 585
BstAFI CTTAAG 1 cut(s) 749
BstAPI GCANNNNNTGC 2 cut(s) 440, 895
BstAUI TGTACA 2 cut(s) 679, 916
BstC8I GCNNGC 5 cut(s) 148, 278, 282, 451, 857
BstDEI CTNAG 5 cut(s) 108, 161, 174, 272, 333
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 5 cut(s) 27, 403, 596, 775, 975
BstKTI GATC 5 cut(s) 64, 130, 415, 676, 872
BstMAI GTCTC 1 cut(s) 834
BstMBI GATC 5 cut(s) 61, 127, 412, 673, 869
BstMWI GCNNNNNNNGC 6 cut(s) 440, 455, 464, 704, 731, 895
BstNI CCWGG 3 cut(s) 27, 821, 846
BstNSI RCATGY 1 cut(s) 150
BstSCI CCNGG 4 cut(s) 25, 819, 844, 900
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 4 cut(s) 313, 433, 901, 938
BstX2I RGATCY 1 cut(s) 412
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 1 cut(s) 412
BsuRI GGCC 2 cut(s) 38, 100
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 5 cut(s) 27, 403, 596, 775, 975
Cac8I GCNNGC 5 cut(s) 148, 278, 282, 451, 857
Cfr13I GGNCC 3 cut(s) 29, 36, 343
Csp6I GTAC 2 cut(s) 680, 917
CviAII CATG 5 cut(s) 33, 147, 464, 677, 1091
CviQI GTAC 2 cut(s) 680, 917
DdeI CTNAG 5 cut(s) 108, 161, 174, 272, 333
DpnI GATC 5 cut(s) 63, 129, 414, 675, 871
DpnII GATC 5 cut(s) 61, 127, 412, 673, 869
DraI TTTAAA 1 cut(s) 372
Eam1104I CTCTTC 4 cut(s) 108, 210, 291, 585
EarI CTCTTC 4 cut(s) 108, 210, 291, 585
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 834
Eco47I GGWCC 2 cut(s) 29, 343
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 25, 819, 844
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 5 cut(s) 36, 150, 467, 680, 1094
FaqI GGGAC 1 cut(s) 329
FatI CATG 5 cut(s) 32, 146, 463, 676, 1090
FauNDI CATATG 2 cut(s) 709, 802
FbaI TGATCA 1 cut(s) 61
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 6 cut(s) 6, 327, 444, 447, 890, 927
FokI GGATG 5 cut(s) 34, 410, 583, 782, 982
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 6 cut(s) 6, 327, 444, 447, 890, 927
FspBI CTAG 1 cut(s) 17
GluI GCNGC 6 cut(s) 6, 327, 444, 447, 890, 927
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 38, 100
HapII CCGG 1 cut(s) 902
Hin1II CATG 5 cut(s) 36, 150, 467, 680, 1094
HindIII AAGCTT 1 cut(s) 723
HinfI GANTC 1 cut(s) 607
HpaII CCGG 1 cut(s) 902
HphI GGTGA 1 cut(s) 507
Hpy166II GTNNAC 4 cut(s) 53, 86, 158, 544
Hpy188I TCNGA 2 cut(s) 61, 794
Hpy188III TCNNGA 7 cut(s) 50, 107, 335, 416, 587, 757, 779
Hpy8I GTNNAC 4 cut(s) 53, 86, 158, 544
HpyAV CCTTC 6 cut(s) 357, 478, 528, 650, 830, 1013
HpyCH4III ACNGT 2 cut(s) 765, 948
HpyCH4IV ACGT 2 cut(s) 692, 1105
HpyCH4V TGCA 8 cut(s) 8, 146, 511, 650, 773, 855, 889, 1072
HpyF10VI GCNNNNNNNGC 6 cut(s) 440, 455, 464, 704, 731, 895
HpyF3I CTNAG 5 cut(s) 108, 161, 174, 272, 333
HpySE526I ACGT 2 cut(s) 692, 1105
Hsp92II CATG 5 cut(s) 36, 150, 467, 680, 1094
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 5 cut(s) 61, 127, 412, 673, 869
LguI GCTCTTC 3 cut(s) 210, 291, 585
LmnI GCTCC 1 cut(s) 261
Lsp1109I GCAGC 4 cut(s) 313, 433, 901, 938
LweI GCATC 2 cut(s) 12, 760
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 692, 1105
MaeIII GTNAC 2 cut(s) 118, 1048
MalI GATC 5 cut(s) 63, 129, 414, 675, 871
MboI GATC 5 cut(s) 61, 127, 412, 673, 869
MboII GAAGA 5 cut(s) 95, 227, 278, 416, 602
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 412
MhlI GDGCHC 2 cut(s) 266, 286
MluCI AATT 5 cut(s) 78, 189, 299, 321, 964
MmeI TCCRAC 2 cut(s) 510, 747
MnlI CCTC 9 cut(s) 111, 279, 331, 382, 412, 610, 664, 694, 1048
Mph1103I ATGCAT 1 cut(s) 775
MseI TTAA 5 cut(s) 206, 371, 438, 549, 750
MspA1I CMGCKG 3 cut(s) 381, 446, 929
MspCI CTTAAG 1 cut(s) 749
MspI CCGG 1 cut(s) 902
MspR9I CCNGG 4 cut(s) 27, 821, 846, 902
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 3 cut(s) 27, 821, 846
MwoI GCNNNNNNNGC 6 cut(s) 440, 455, 464, 704, 731, 895
NciI CCSGG 1 cut(s) 902
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 2 cut(s) 709, 802
NdeII GATC 5 cut(s) 61, 127, 412, 673, 869
NlaIII CATG 5 cut(s) 36, 150, 467, 680, 1094
NlaIV GGNNCC 2 cut(s) 345, 564
NmuCI GTSAC 2 cut(s) 118, 1048
NsiI ATGCAT 1 cut(s) 775
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PasI CCCWGGG 1 cut(s) 845
PciSI GCTCTTC 3 cut(s) 210, 291, 585
PfeI GAWTC 1 cut(s) 607
PflMI CCANNNNNTGG 2 cut(s) 257, 384
PkrI GCNGC 6 cut(s) 7, 328, 445, 448, 891, 928
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 3 cut(s) 25, 819, 844
PspGI CCWGG 3 cut(s) 25, 819, 844
PspN4I GGNNCC 2 cut(s) 345, 564
PspPI GGNCC 3 cut(s) 29, 36, 343
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 1 cut(s) 412
PvuII CAGCTG 2 cut(s) 381, 929
RsaI GTAC 2 cut(s) 681, 918
RsaNI GTAC 2 cut(s) 680, 917
SacI GAGCTC 1 cut(s) 286
SapI GCTCTTC 3 cut(s) 210, 291, 585
SaqAI TTAA 5 cut(s) 206, 371, 438, 549, 750
SatI GCNGC 6 cut(s) 6, 327, 444, 447, 890, 927
Sau3AI GATC 5 cut(s) 61, 127, 412, 673, 869
Sau96I GGNCC 3 cut(s) 29, 36, 343
ScrFI CCNGG 4 cut(s) 27, 821, 846, 902
SduI GDGCHC 2 cut(s) 266, 286
SfaNI GCATC 2 cut(s) 12, 760
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 2 cut(s) 29, 343
SmlI CTYRAG 3 cut(s) 134, 585, 749
SmoI CTYRAG 3 cut(s) 134, 585, 749
SphI GCATGC 1 cut(s) 150
Sse9I AATT 5 cut(s) 78, 189, 299, 321, 964
SsiI CCGC 3 cut(s) 150, 444, 476
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 4 cut(s) 25, 819, 844, 900
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 765, 948
TaiI ACGT 2 cut(s) 695, 1108
TasI AATT 5 cut(s) 78, 189, 299, 321, 964
TatI WGTACW 2 cut(s) 679, 916
TauI GCSGC 1 cut(s) 446
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 5 cut(s) 206, 371, 438, 549, 750
Tru9I TTAA 5 cut(s) 206, 371, 438, 549, 750
TseFI GTSAC 2 cut(s) 118, 1048
TseI GCWGC 5 cut(s) 5, 326, 446, 889, 926
Tsp45I GTSAC 2 cut(s) 118, 1048
TspDTI ATGAA 9 cut(s) 345, 417, 702, 726, 789, 816, 897, 1032, 1079
TspGWI ACGGA 1 cut(s) 106
Van91I CCANNNNNTGG 2 cut(s) 257, 384
Vha464I CTTAAG 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 29, 343
XceI RCATGY 1 cut(s) 150
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.