Rh2DG291900

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006140
Physical Location & Seq
Forward (+)
34375794 .. 34378663
2870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG291900.1

Sequence Viewer

Length: 1134 bp
ATGGCGAATGTCCTGTTAGGCATGCCGGGACCATGGGCTGATGATTTTCGTGAATCATCTGATCATTATACAGCAAAAATTGGTGGACTACCTGATTGGCCCCTTACTGAGGAATCTGTGCCACCGAATCTGCTTCAATGTAGTGCTTGTGGAAGTAGACTATGTCTTGTTGCGCAGGTTTATGCTCCAGTTTCAAGTGAAAACTTAAGAGTTGAAGAGCGTGTGCTTTTTGTTTTTGGTTGTCTGATGGCAAACTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGTGGTGCAATCAAATACCACTTCTCAGGAAGTGGTGCCAGTGACTTCACCATCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGATATCGATTTGGAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGTTTTGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCATTGCCTTCAACTCAGTTGGAAAAAGTGGCAGACGCTAATACACCTGTGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATCAAAAATAACTCAAATGATGAGGATGACGCACAAAGTGAAACATGGGCAGAGGAAGCTTATGAATATGATAAAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTGAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCACTCCTAGCTACACAAGCCGAAGGCGACCCTGGGAGATGTACATTGTGTGGTGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCATTATTATATTTTCTACAAGGAGCTGCCGATGATTGCCAAAGACGGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATATACTTGTTCCCAGAGCTGTTCTCAACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCCGGGGTAGCCGAACATAGCCATTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

377

Amino Acids

41.93

Weight (kDa)

4.71

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 249 - 362 3.3e-29 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 166
AccB1I GGYRCC 1 cut(s) 343
AccI GTMKAC 1 cut(s) 157
AclWI GGATC 1 cut(s) 886
AcsI RAATTY 1 cut(s) 1036
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 2 cut(s) 865, 1083
AfiI CCNNNNNNNGG 2 cut(s) 109, 1104
AflII CTTAAG 2 cut(s) 205, 758
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 8 cut(s) 137, 195, 215, 296, 375, 531, 612, 1041
AjnI CCWGG 1 cut(s) 853
Alw21I GWGCWC 2 cut(s) 266, 286
AlwI GGATC 1 cut(s) 886
Ama87I CYCGRG 1 cut(s) 1103
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 4 cut(s) 455, 571, 898, 935
ApoI RAATTY 1 cut(s) 1036
Asp700I GAANNNNTTC 1 cut(s) 1074
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 29, 99
AsuC2I CCSGG 3 cut(s) 27, 1104, 1105
AsuHPI GGTGA 1 cut(s) 348
AsuII TTCGAA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 1103
AvaII GGWCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 266, 286
BbvI GCAGC 4 cut(s) 442, 558, 910, 922
BccI CCATC 4 cut(s) 241, 367, 404, 665
BciT130I CCWGG 1 cut(s) 855
BclI TGATCA 2 cut(s) 61, 1027
BcnI CCSGG 3 cut(s) 27, 1104, 1105
BfaI CTAG 2 cut(s) 830, 1088
BfmI CTRYAG 1 cut(s) 741
BfrI CTTAAG 2 cut(s) 205, 758
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 4 cut(s) 456, 572, 899, 936
BlsI GCNGC 4 cut(s) 457, 573, 900, 937
Bme1390I CCNGG 4 cut(s) 27, 855, 1104, 1105
Bme18I GGWCC 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 1103
BmgT120I GGNCC 2 cut(s) 29, 99
BmiI GGNNCC 3 cut(s) 30, 101, 345
BmrFI CCNGG 4 cut(s) 27, 855, 1104, 1105
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 1 cut(s) 614
BmuI ACTGGG 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 4 cut(s) 253, 285, 1000, 1032
BpmI CTGGAG 2 cut(s) 171, 983
Bpu14I TTCGAA 1 cut(s) 638
BpuEI CTTGAG 1 cut(s) 579
BpuMI CCSGG 3 cut(s) 27, 1104, 1105
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 5 cut(s) 32, 853, 854, 1103, 1104
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 1104
Bse1I ACTGG 6 cut(s) 188, 347, 966, 974, 980, 1051
Bse3DI GCAATG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 855
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 5 cut(s) 32, 853, 854, 1103, 1104
BseGI GGATG 4 cut(s) 406, 688, 784, 984
BseLI CCNNNNNNNGG 2 cut(s) 109, 1104
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 3 cut(s) 99, 347, 548
BseNI ACTGG 6 cut(s) 188, 347, 966, 974, 980, 1051
BseRI GAGGAG 2 cut(s) 258, 443
BseXI GCAGC 4 cut(s) 442, 558, 910, 922
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 343
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 2 cut(s) 266, 286
BsiHKCI CYCGRG 1 cut(s) 1103
BsiSI CCGG 2 cut(s) 26, 1104
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 2 cut(s) 109, 1104
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 1103
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 266, 286
Bsp1407I TGTACA 2 cut(s) 863, 1081
Bsp143I GATC 3 cut(s) 61, 878, 1027
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 3 cut(s) 100, 346, 547
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 3 cut(s) 30, 101, 345
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 886
BspQI GCTCTTC 2 cut(s) 210, 291
BspT104I TTCGAA 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 343
BspTI CTTAAG 2 cut(s) 205, 758
BsrDI GCAATG 1 cut(s) 521
BsrGI TGTACA 2 cut(s) 863, 1081
BsrI ACTGG 6 cut(s) 188, 347, 966, 974, 980, 1051
BssECI CCNNGG 5 cut(s) 32, 853, 854, 1103, 1104
BssMI GATC 3 cut(s) 61, 878, 1027
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 2 cut(s) 257, 957
Bst6I CTCTTC 3 cut(s) 210, 291, 594
BstAFI CTTAAG 2 cut(s) 205, 758
BstAPI GCANNNNNTGC 1 cut(s) 904
BstAUI TGTACA 2 cut(s) 863, 1081
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 3 cut(s) 23, 278, 282
BstDEI CTNAG 4 cut(s) 108, 272, 333, 534
BstDSI CCRYGG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 4 cut(s) 406, 688, 784, 984
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 64, 881, 1030
BstMBI GATC 3 cut(s) 61, 878, 1027
BstMWI GCNNNNNNNGC 5 cut(s) 464, 713, 740, 839, 904
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 25, 491
BstSCI CCNGG 4 cut(s) 25, 853, 1102, 1103
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 4 cut(s) 442, 558, 910, 922
BstV2I GAAGAC 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 4 cut(s) 406, 688, 784, 984
BtsIMutI CAGTG 3 cut(s) 354, 959, 1044
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 23, 278, 282
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 29, 99
Cfr9I CCCGGG 1 cut(s) 1103
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 2 cut(s) 563, 695
Csp6I GTAC 2 cut(s) 864, 1082
CviAII CATG 4 cut(s) 22, 33, 488, 702
CviQI GTAC 2 cut(s) 864, 1082
DdeI CTNAG 4 cut(s) 108, 272, 333, 534
DpnI GATC 3 cut(s) 63, 880, 1029
DpnII GATC 3 cut(s) 61, 878, 1027
DraIII CACNNNGTG 1 cut(s) 695
Eam1104I CTCTTC 3 cut(s) 210, 291, 594
EarI CTCTTC 3 cut(s) 210, 291, 594
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 286
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 29
Eco53kI GAGCTC 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 1103
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 853
EcoRV GATATC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 4 cut(s) 25, 36, 491, 705
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 21, 32, 487, 701
FauNDI CATATG 1 cut(s) 811
FbaI TGATCA 2 cut(s) 61, 1027
FblI GTMKAC 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 456, 572, 899, 936
FokI GGATG 4 cut(s) 413, 695, 791, 991
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 4 cut(s) 456, 572, 899, 936
FspBI CTAG 2 cut(s) 830, 1088
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 1 cut(s) 174
GluI GCNGC 4 cut(s) 456, 572, 899, 936
GsuI CTGGAG 2 cut(s) 171, 983
HaeIII GGCC 1 cut(s) 100
HapII CCGG 2 cut(s) 26, 1104
HgaI GACGC 2 cut(s) 563, 695
HhaI GCGC 1 cut(s) 175
Hin1II CATG 4 cut(s) 25, 36, 491, 705
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 2 cut(s) 714, 732
HinfI GANTC 3 cut(s) 53, 113, 127
HpaII CCGG 2 cut(s) 26, 1104
HphI GGTGA 1 cut(s) 348
Hpy166II GTNNAC 3 cut(s) 86, 158, 784
Hpy188I TCNGA 3 cut(s) 61, 246, 803
Hpy188III TCNNGA 3 cut(s) 50, 335, 596
Hpy8I GTNNAC 3 cut(s) 86, 158, 784
HpyAV CCTTC 2 cut(s) 537, 839
HpyCH4III ACNGT 2 cut(s) 257, 957
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 4 cut(s) 316, 515, 743, 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 464, 713, 740, 839, 904
HpyF3I CTNAG 4 cut(s) 108, 272, 333, 534
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 4 cut(s) 25, 36, 491, 705
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 2 cut(s) 61, 1027
Kzo9I GATC 3 cut(s) 61, 878, 1027
LguI GCTCTTC 2 cut(s) 210, 291
LmnI GCTCC 3 cut(s) 190, 261, 932
Lsp1109I GCAGC 4 cut(s) 442, 558, 910, 922
LweI GCATC 1 cut(s) 614
MaeI CTAG 2 cut(s) 830, 1088
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 3 cut(s) 349, 957, 1060
MalI GATC 3 cut(s) 63, 880, 1029
MboI GATC 3 cut(s) 61, 878, 1027
MboII GAAGA 6 cut(s) 227, 278, 284, 419, 600, 611
MhlI GDGCHC 2 cut(s) 266, 286
MluCI AATT 3 cut(s) 78, 299, 1036
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 9 cut(s) 103, 279, 385, 421, 595, 673, 703, 918, 1060
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 206, 447, 759, 765
MslI CAYNNNNRTG 1 cut(s) 492
MspCI CTTAAG 2 cut(s) 205, 758
MspI CCGG 2 cut(s) 26, 1104
MspR9I CCNGG 4 cut(s) 27, 855, 1104, 1105
MvaI CCWGG 1 cut(s) 855
MwoI GCNNNNNNNGC 5 cut(s) 464, 713, 740, 839, 904
NciI CCSGG 3 cut(s) 27, 1104, 1105
NcoI CCATGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 811
NdeII GATC 3 cut(s) 61, 878, 1027
NlaIII CATG 4 cut(s) 25, 36, 491, 705
NlaIV GGNNCC 3 cut(s) 30, 101, 345
NmuCI GTSAC 3 cut(s) 349, 957, 1060
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 2 cut(s) 25, 491
NspV TTCGAA 1 cut(s) 638
PaeI GCATGC 1 cut(s) 25
PasI CCCWGGG 1 cut(s) 854
PciI ACATGT 1 cut(s) 487
PciSI GCTCTTC 2 cut(s) 210, 291
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 3 cut(s) 53, 113, 127
PflFI GACNNNGTC 1 cut(s) 162
PkrI GCNGC 4 cut(s) 457, 573, 900, 937
PscI ACATGT 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 3 cut(s) 30, 101, 345
PspPI GGNCC 2 cut(s) 29, 99
PstI CTGCAG 1 cut(s) 745
PsyI GACNNNGTC 1 cut(s) 162
RsaI GTAC 2 cut(s) 865, 1083
RsaNI GTAC 2 cut(s) 864, 1082
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 286
SapI GCTCTTC 2 cut(s) 210, 291
SaqAI TTAA 4 cut(s) 206, 447, 759, 765
SatI GCNGC 4 cut(s) 456, 572, 899, 936
Sau3AI GATC 3 cut(s) 61, 878, 1027
Sau96I GGNCC 2 cut(s) 29, 99
ScrFI CCNGG 4 cut(s) 27, 855, 1104, 1105
SduI GDGCHC 2 cut(s) 266, 286
SfaNI GCATC 1 cut(s) 614
SfcI CTRYAG 1 cut(s) 741
SfuI TTCGAA 1 cut(s) 638
SinI GGWCC 1 cut(s) 29
SmaI CCCGGG 1 cut(s) 1105
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 3 cut(s) 205, 594, 758
SmoI CTYRAG 3 cut(s) 205, 594, 758
SphI GCATGC 1 cut(s) 25
Sse9I AATT 3 cut(s) 78, 299, 1036
SspMI CTAG 2 cut(s) 830, 1088
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 4 cut(s) 25, 853, 1102, 1103
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 257, 957
TaiI ACGT 1 cut(s) 502
TaqI TCGA 2 cut(s) 420, 638
TasI AATT 3 cut(s) 78, 299, 1036
TatI WGTACW 2 cut(s) 863, 1081
TfiI GAWTC 3 cut(s) 53, 113, 127
Tru1I TTAA 4 cut(s) 206, 447, 759, 765
Tru9I TTAA 4 cut(s) 206, 447, 759, 765
TscAI CASTG 3 cut(s) 354, 966, 1051
TseFI GTSAC 3 cut(s) 349, 957, 1060
TseI GCWGC 4 cut(s) 455, 571, 898, 935
Tsp45I GTSAC 3 cut(s) 349, 957, 1060
TspDTI ATGAA 6 cut(s) 420, 510, 735, 798, 906, 1116
TspMI CCCGGG 1 cut(s) 1103
TspRI CASTG 3 cut(s) 354, 966, 1051
Tth111I GACNNNGTC 1 cut(s) 162
Vha464I CTTAAG 2 cut(s) 205, 758
VpaK11BI GGWCC 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 1036
XceI RCATGY 2 cut(s) 25, 491
XmaI CCCGGG 1 cut(s) 1103
XmiI GTMKAC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 2 cut(s) 830, 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.