RLG00000018321

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006140
Physical Location & Seq
Forward (+)
28291052 .. 28294356
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018321

Sequence Viewer

Length: 1206 bp
ATGAATCTGGCGGGAAGCCTTTTGTGGTTTTGGCGGGAGCGCCAAGTTGGCTTTTTAGTGGCGTTAGTGATGGCGAAAGTCCTGTTAGGCATGCCAGGACCATGGGCTGATGATTTTCGTGAATCATGTGATCATTATACAACGAAAATTGGTGGACTACCTGATTGGCCCCTTATTGAGGAATCTGTGCCACTGAATCTGCTTCAATGTAGTGCTTGTGGAAGTAAACTATGTCTTGTAGCGCAGGTTTATGCTCCAGTTTCGAGTGAAAACTTAAGAGTTGAAGAGCGTGTGCTTTTTGTTTTTGGTTGTCTGATGGAAAAGTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGCAGAGCAATCACCAAATACCACTTCTCAGGAAGTGGTGCCAATGACTTCACCATCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGAATGATGAAGATGGAGATATCGATTTGCAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGCTTCGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCATTGCCTTCAAGTCATTTGGAAAAAGTGGCAGACGCTAATACACCTGTGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATCAAAAATAACTCAAATGATGAGGATGATGCACAAAGTGAAACATGGGCAGCGGAAGCTTATGAATATGATAAAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTGAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCTCTCCTAGCTACACAAGCCGAAGGCGACCCTGGGAGATGTACATTATGTGGTGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCATTATTATATTTTCTACAAGGAGCCGCCGATGATTGCCAAAGACGGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATATACTTGTTCCCAGAGCTGTTCTCGACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCCGGGGTAGCCGAACATAGCTATTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

402

Amino Acids

44.87

Weight (kDa)

4.95

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 273 - 386 6.4e-29 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 415
AciI CCGC 4 cut(s) 11, 34, 782, 1008
AclWI GGATC 1 cut(s) 958
AcsI RAATTY 1 cut(s) 1108
AdeI CACNNNGTG 1 cut(s) 767
AfaI GTAC 2 cut(s) 937, 1155
AfiI CCNNNNNNNGG 2 cut(s) 178, 1176
AflII CTTAAG 2 cut(s) 274, 830
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 8 cut(s) 206, 284, 365, 447, 472, 603, 684, 1113
AjnI CCWGG 2 cut(s) 94, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 385, 417
Alw21I GWGCWC 2 cut(s) 335, 355
AlwI GGATC 1 cut(s) 958
Ama87I CYCGRG 1 cut(s) 1175
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 4 cut(s) 527, 643, 779, 970
ApoI RAATTY 1 cut(s) 1108
Asp700I GAANNNNTTC 1 cut(s) 1146
AspLEI GCGC 2 cut(s) 42, 244
AspS9I GGNCC 2 cut(s) 98, 168
AsuC2I CCSGG 2 cut(s) 1176, 1177
AsuHPI GGTGA 2 cut(s) 381, 420
AsuII TTCGAA 1 cut(s) 710
AvaI CYCGRG 1 cut(s) 1175
AvaII GGWCC 1 cut(s) 98
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 353
Bbv12I GWGCWC 2 cut(s) 335, 355
BbvI GCAGC 4 cut(s) 514, 630, 791, 982
BccI CCATC 5 cut(s) 64, 310, 439, 476, 737
BciT130I CCWGG 2 cut(s) 96, 927
BclI TGATCA 2 cut(s) 130, 1099
BcnI CCSGG 2 cut(s) 1176, 1177
BfaI CTAG 2 cut(s) 902, 1160
BfmI CTRYAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 43
BfrI CTTAAG 2 cut(s) 274, 830
BfuAI ACCTGC 1 cut(s) 235
BglI GCCNNNNNGGC 1 cut(s) 48
BisI GCNGC 5 cut(s) 528, 644, 780, 971, 1008
BlsI GCNGC 5 cut(s) 529, 645, 781, 972, 1009
Bme1390I CCNGG 4 cut(s) 96, 927, 1176, 1177
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 1 cut(s) 1175
BmgT120I GGNCC 2 cut(s) 98, 168
BmiI GGNNCC 3 cut(s) 170, 417, 1006
BmrFI CCNGG 4 cut(s) 96, 927, 1176, 1177
BmrI ACTGGG 1 cut(s) 1128
BmsI GCATC 3 cut(s) 367, 686, 748
BmuI ACTGGG 1 cut(s) 1128
BpiI GAAGAC 1 cut(s) 353
BplI GAGNNNNNCTC 4 cut(s) 322, 354, 1072, 1104
BpmI CTGGAG 2 cut(s) 240, 1055
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 1 cut(s) 651
BpuMI CCSGG 2 cut(s) 1176, 1177
Bsa29I ATCGAT 1 cut(s) 492
BsaJI CCNNGG 5 cut(s) 101, 925, 926, 1175, 1176
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 1176
Bse1I ACTGG 5 cut(s) 257, 1038, 1046, 1052, 1123
Bse3DI GCAATG 1 cut(s) 593
BseBI CCWGG 2 cut(s) 96, 927
BseCI ATCGAT 1 cut(s) 492
BseDI CCNNGG 5 cut(s) 101, 925, 926, 1175, 1176
BseGI GGATG 3 cut(s) 760, 856, 1056
BseLI CCNNNNNNNGG 2 cut(s) 178, 1176
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 5 cut(s) 257, 1038, 1046, 1052, 1123
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 4 cut(s) 514, 630, 791, 982
BshFI GGCC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 492
BsiHKAI GWGCWC 2 cut(s) 335, 355
BsiHKCI CYCGRG 1 cut(s) 1175
BsiSI CCGG 1 cut(s) 1176
BslI CCNNNNNNNGG 2 cut(s) 178, 1176
BsnI GGCC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 1175
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 2 cut(s) 335, 355
Bsp1407I TGTACA 2 cut(s) 935, 1153
Bsp143I GATC 3 cut(s) 130, 950, 1099
Bsp19I CCATGG 1 cut(s) 101
BspACI CCGC 4 cut(s) 11, 34, 782, 1008
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 418
BspDI ATCGAT 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 170, 417, 1006
BspMAI CTGCAG 1 cut(s) 817
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 958
BspQI GCTCTTC 2 cut(s) 279, 360
BspT104I TTCGAA 1 cut(s) 710
BspT107I GGYRCC 1 cut(s) 415
BspTI CTTAAG 2 cut(s) 274, 830
BsrDI GCAATG 1 cut(s) 593
BsrGI TGTACA 2 cut(s) 935, 1153
BsrI ACTGG 5 cut(s) 257, 1038, 1046, 1052, 1123
BssECI CCNNGG 5 cut(s) 101, 925, 926, 1175, 1176
BssMI GATC 3 cut(s) 130, 950, 1099
BssT1I CCWWGG 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 96, 927
Bst4CI ACNGT 1 cut(s) 1029
Bst6I CTCTTC 3 cut(s) 279, 360, 666
BstAFI CTTAAG 2 cut(s) 274, 830
BstAPI GCANNNNNTGC 1 cut(s) 976
BstAUI TGTACA 2 cut(s) 935, 1153
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 4 cut(s) 92, 347, 351, 532
BstDEI CTNAG 2 cut(s) 341, 405
BstDSI CCRYGG 1 cut(s) 101
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 760, 856, 1056
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 2 cut(s) 42, 244
BstKTI GATC 3 cut(s) 133, 953, 1102
BstMBI GATC 3 cut(s) 130, 950, 1099
BstMWI GCNNNNNNNGC 6 cut(s) 48, 536, 785, 812, 911, 976
BstNI CCWGG 2 cut(s) 96, 927
BstNSI RCATGY 2 cut(s) 94, 563
BstSCI CCNGG 4 cut(s) 94, 925, 1174, 1175
BstSFI CTRYAG 1 cut(s) 813
BstV1I GCAGC 4 cut(s) 514, 630, 791, 982
BstV2I GAAGAC 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 492
BsuRI GGCC 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 705
BtsCI GGATG 3 cut(s) 760, 856, 1056
BtsIMutI CAGTG 3 cut(s) 191, 1031, 1116
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 4 cut(s) 92, 347, 351, 532
CfoI GCGC 2 cut(s) 42, 244
Cfr13I GGNCC 2 cut(s) 98, 168
Cfr9I CCCGGG 1 cut(s) 1175
ClaI ATCGAT 1 cut(s) 492
CseI GACGC 1 cut(s) 635
Csp6I GTAC 2 cut(s) 936, 1154
CviAII CATG 5 cut(s) 91, 102, 126, 560, 774
CviQI GTAC 2 cut(s) 936, 1154
DdeI CTNAG 2 cut(s) 341, 405
DpnI GATC 3 cut(s) 132, 952, 1101
DpnII GATC 3 cut(s) 130, 950, 1099
DraIII CACNNNGTG 1 cut(s) 767
Eam1104I CTCTTC 3 cut(s) 279, 360, 666
EarI CTCTTC 3 cut(s) 279, 360, 666
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 1175
EcoICRI GAGCTC 1 cut(s) 353
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 94, 925
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 5 cut(s) 94, 105, 129, 563, 777
FalI AAGNNNNNCTT 2 cut(s) 1134, 1166
FatI CATG 5 cut(s) 90, 101, 125, 559, 773
FauI CCCGC 2 cut(s) 4, 27
FauNDI CATATG 1 cut(s) 883
FbaI TGATCA 2 cut(s) 130, 1099
Fnu4HI GCNGC 5 cut(s) 528, 644, 780, 971, 1008
FokI GGATG 3 cut(s) 767, 863, 1063
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 5 cut(s) 528, 644, 780, 971, 1008
FspBI CTAG 2 cut(s) 902, 1160
GlaI GCGC 2 cut(s) 41, 243
GluI GCNGC 5 cut(s) 528, 644, 780, 971, 1008
GsuI CTGGAG 2 cut(s) 240, 1055
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 1176
HgaI GACGC 1 cut(s) 635
HhaI GCGC 2 cut(s) 42, 244
Hin1II CATG 5 cut(s) 94, 105, 129, 563, 777
Hin6I GCGC 2 cut(s) 40, 242
HinP1I GCGC 2 cut(s) 40, 242
HindIII AAGCTT 2 cut(s) 786, 804
HinfI GANTC 4 cut(s) 4, 122, 182, 196
HpaII CCGG 1 cut(s) 1176
HphI GGTGA 2 cut(s) 381, 420
Hpy166II GTNNAC 3 cut(s) 155, 227, 856
Hpy188I TCNGA 2 cut(s) 315, 875
Hpy188III TCNNGA 4 cut(s) 119, 407, 668, 1089
Hpy8I GTNNAC 3 cut(s) 155, 227, 856
HpyAV CCTTC 2 cut(s) 609, 911
HpyCH4III ACNGT 1 cut(s) 1029
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 6 cut(s) 380, 499, 587, 761, 815, 970
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 536, 785, 812, 911, 976
HpyF3I CTNAG 2 cut(s) 341, 405
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 5 cut(s) 94, 105, 129, 563, 777
HspAI GCGC 2 cut(s) 40, 242
Ksp22I TGATCA 2 cut(s) 130, 1099
Kzo9I GATC 3 cut(s) 130, 950, 1099
LguI GCTCTTC 2 cut(s) 279, 360
LmnI GCTCC 4 cut(s) 37, 259, 330, 1004
Lsp1109I GCAGC 4 cut(s) 514, 630, 791, 982
LweI GCATC 3 cut(s) 367, 686, 748
MaeI CTAG 2 cut(s) 902, 1160
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 2 cut(s) 1029, 1132
MalI GATC 3 cut(s) 132, 952, 1101
MboI GATC 3 cut(s) 130, 950, 1099
MboII GAAGA 6 cut(s) 296, 347, 353, 491, 672, 683
MhlI GDGCHC 2 cut(s) 335, 355
MluCI AATT 3 cut(s) 147, 368, 1108
MnlI CCTC 8 cut(s) 172, 348, 457, 667, 745, 906, 990, 1132
MroXI GAANNNNTTC 1 cut(s) 1146
MseI TTAA 4 cut(s) 275, 519, 831, 837
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 782
MspCI CTTAAG 2 cut(s) 274, 830
MspI CCGG 1 cut(s) 1176
MspR9I CCNGG 4 cut(s) 96, 927, 1176, 1177
MvaI CCWGG 2 cut(s) 96, 927
MwoI GCNNNNNNNGC 6 cut(s) 48, 536, 785, 812, 911, 976
NciI CCSGG 2 cut(s) 1176, 1177
NcoI CCATGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 883
NdeII GATC 3 cut(s) 130, 950, 1099
NlaIII CATG 5 cut(s) 94, 105, 129, 563, 777
NlaIV GGNNCC 3 cut(s) 170, 417, 1006
NmuCI GTSAC 2 cut(s) 1029, 1132
NspI RCATGY 2 cut(s) 94, 563
NspV TTCGAA 1 cut(s) 710
PaeI GCATGC 1 cut(s) 94
PasI CCCWGGG 1 cut(s) 926
PciI ACATGT 1 cut(s) 559
PciSI GCTCTTC 2 cut(s) 279, 360
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 4 cut(s) 4, 122, 182, 196
PkrI GCNGC 5 cut(s) 529, 645, 781, 972, 1009
PscI ACATGT 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 2 cut(s) 94, 925
PspGI CCWGG 2 cut(s) 94, 925
PspN4I GGNNCC 3 cut(s) 170, 417, 1006
PspPI GGNCC 2 cut(s) 98, 168
PstI CTGCAG 1 cut(s) 817
RsaI GTAC 2 cut(s) 937, 1155
RsaNI GTAC 2 cut(s) 936, 1154
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 355
SapI GCTCTTC 2 cut(s) 279, 360
SaqAI TTAA 4 cut(s) 275, 519, 831, 837
SatI GCNGC 5 cut(s) 528, 644, 780, 971, 1008
Sau3AI GATC 3 cut(s) 130, 950, 1099
Sau96I GGNCC 2 cut(s) 98, 168
ScrFI CCNGG 4 cut(s) 96, 927, 1176, 1177
SduI GDGCHC 2 cut(s) 335, 355
SfaNI GCATC 3 cut(s) 367, 686, 748
SfcI CTRYAG 1 cut(s) 813
SfuI TTCGAA 1 cut(s) 710
SinI GGWCC 1 cut(s) 98
SmaI CCCGGG 1 cut(s) 1177
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 3 cut(s) 274, 666, 830
SmoI CTYRAG 3 cut(s) 274, 666, 830
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 147, 368, 1108
SsiI CCGC 4 cut(s) 11, 34, 782, 1008
SspMI CTAG 2 cut(s) 902, 1160
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 4 cut(s) 94, 925, 1174, 1175
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 1 cut(s) 1029
TaiI ACGT 1 cut(s) 574
TaqI TCGA 4 cut(s) 263, 492, 710, 1090
TasI AATT 3 cut(s) 147, 368, 1108
TatI WGTACW 2 cut(s) 935, 1153
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 4 cut(s) 4, 122, 182, 196
Tru1I TTAA 4 cut(s) 275, 519, 831, 837
Tru9I TTAA 4 cut(s) 275, 519, 831, 837
TscAI CASTG 3 cut(s) 198, 1038, 1123
TseFI GTSAC 2 cut(s) 1029, 1132
TseI GCWGC 4 cut(s) 527, 643, 779, 970
Tsp45I GTSAC 2 cut(s) 1029, 1132
TspDTI ATGAA 7 cut(s) 17, 492, 582, 807, 870, 978, 1188
TspMI CCCGGG 1 cut(s) 1175
TspRI CASTG 3 cut(s) 198, 1038, 1123
Vha464I CTTAAG 2 cut(s) 274, 830
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 1108
XceI RCATGY 2 cut(s) 94, 563
XmaI CCCGGG 1 cut(s) 1175
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 2 cut(s) 902, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.