FvH4_1g22740

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006140
Physical Location & Seq
Forward (+)
14716263 .. 14721093
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22740.t5

Sequence Viewer

Length: 801 bp
ATGGCGAATGTCCTATTAGGCATGCCAGGACCATGGGCTGATGATGTTTGTGAATCAGCTGATCATTATACAACAAAAATCGGTGGACTACCTGATTGGCCCCTTCCTAAGGAATCCGTGCCACCAAAACTGCTGGAGTGTAGTGCTTGTGGAAGTAAACTATGTCTTGTTGCGCAGGTTTATGCTCCAGTTTCAAGTAAAGACTTACAAGTTGAAGAGCGTGTTATTTTTGTCTTTGGTTGTCTGATGACAAAGTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAACTGGACAATGCGGAGCAATCAAATACCACTTCTGAGGGAGTGGAGCCTCTGGCTTCACCACCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGATATTGATTTGGAGGAGTTGGGTAAAGCACTTAACGATGCTGCGAGCTTAGCTTCTAGTACCAAAAAACCACATGCCAATGAATGTAGTAAGCCTGTTGCAAAACCATCACCTTCAAGTCAGTTGGAAAAAGTTGTAGACGCTAATACACCTGGAACTGATCAGAATAGCTCATGTCAGAACTCTTTGTCAACATTCTTTTGGATAAAAACTGAGTGCTGCCTTGTTTTTATTTATACACCCAAGAAGAGCCATCTTCAAAGGACCTTACATCTATGTGTTCAAACTACTCATCACTTTCCATTAAAAATAACTCAAATGATGAGGATGATCATGCACAAAGTGAAACATGGGCGGAGGAAGCCTATGAATATGATAAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

267

Amino Acids

29.42

Weight (kDa)

6.7

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 249 - 363 1.2e-28 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
Acc36I ACCTGC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 552
AciI CCGC 2 cut(s) 311, 769
AdeI CACNNNGTG 1 cut(s) 757
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 7 cut(s) 195, 215, 296, 375, 531, 674, 698
AjnI CCWGG 2 cut(s) 25, 565
AluBI AGCT 8 cut(s) 59, 276, 284, 384, 462, 467, 585, 796
AluI AGCT 8 cut(s) 59, 276, 284, 384, 462, 467, 585, 796
Alw21I GWGCWC 2 cut(s) 266, 286
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 455, 633
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 3 cut(s) 29, 99, 678
AsuHPI GGTGA 2 cut(s) 348, 516
AvaII GGWCC 2 cut(s) 29, 678
AxyI CCTNAGG 1 cut(s) 108
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 266, 286
BbvI GCAGC 2 cut(s) 442, 620
BccI CCATC 3 cut(s) 404, 529, 675
BciT130I CCWGG 2 cut(s) 27, 567
BclI TGATCA 3 cut(s) 61, 574, 744
BfaI CTAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 456, 634
BlpI GCTNAGC 1 cut(s) 463
BlsI GCNGC 2 cut(s) 457, 635
Bme1390I CCNGG 2 cut(s) 27, 567
Bme18I GGWCC 2 cut(s) 29, 678
BmgT120I GGNCC 3 cut(s) 29, 99, 678
BmiI GGNNCC 2 cut(s) 101, 345
BmrFI CCNGG 2 cut(s) 27, 567
BmsI GCATC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BpmI CTGGAG 2 cut(s) 155, 171
Bpu1102I GCTNAGC 1 cut(s) 463
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 188, 306
Bse21I CCTNAGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 27, 567
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 406, 747
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 324, 618
BseNI ACTGG 2 cut(s) 188, 306
BseRI GAGGAG 2 cut(s) 258, 443
BseXI GCAGC 2 cut(s) 442, 620
BshFI GGCC 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 266, 286
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 266, 286
Bsp143I GATC 3 cut(s) 61, 574, 744
Bsp1720I GCTNAGC 1 cut(s) 463
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 2 cut(s) 311, 769
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 2 cut(s) 325, 619
BspLI GGNNCC 2 cut(s) 101, 345
BspMI ACCTGC 1 cut(s) 166
BspQI GCTCTTC 3 cut(s) 210, 291, 656
BsrI ACTGG 2 cut(s) 188, 306
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 3 cut(s) 61, 574, 744
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 2 cut(s) 27, 567
Bst6I CTCTTC 3 cut(s) 210, 291, 656
BstC8I GCNNGC 4 cut(s) 23, 278, 282, 460
BstDEI CTNAG 5 cut(s) 108, 272, 333, 463, 627
BstDSI CCRYGG 1 cut(s) 32
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 406, 747
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 64, 577, 747
BstMBI GATC 3 cut(s) 61, 574, 744
BstMWI GCNNNNNNNGC 2 cut(s) 464, 775
BstNI CCWGG 2 cut(s) 27, 567
BstNSI RCATGY 2 cut(s) 25, 491
BstSCI CCNGG 2 cut(s) 25, 565
BstV1I GCAGC 2 cut(s) 442, 620
BstV2I GAAGAC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 406, 747
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 4 cut(s) 23, 278, 282, 460
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 29, 99, 678
CseI GACGC 1 cut(s) 563
Csp6I GTAC 1 cut(s) 474
CviAII CATG 6 cut(s) 22, 33, 488, 588, 748, 764
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 5 cut(s) 108, 272, 333, 463, 627
DpnI GATC 3 cut(s) 63, 576, 746
DpnII GATC 3 cut(s) 61, 574, 744
DraIII CACNNNGTG 1 cut(s) 757
Eam1104I CTCTTC 3 cut(s) 210, 291, 656
EarI CTCTTC 3 cut(s) 210, 291, 656
EciI GGCGGA 1 cut(s) 784
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 29, 678
Eco53kI GAGCTC 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 678
EcoRII CCWGG 2 cut(s) 25, 565
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 6 cut(s) 25, 36, 491, 591, 751, 767
FatI CATG 6 cut(s) 21, 32, 487, 587, 747, 763
FbaI TGATCA 3 cut(s) 61, 574, 744
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 456, 634
FokI GGATG 2 cut(s) 413, 754
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 456, 634
FspBI CTAG 1 cut(s) 471
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 456, 634
GsuI CTGGAG 2 cut(s) 155, 171
HaeIII GGCC 1 cut(s) 100
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 175
Hin1II CATG 6 cut(s) 25, 36, 491, 591, 751, 767
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 606
HindII GTYRAC 1 cut(s) 606
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 2 cut(s) 53, 113
HphI GGTGA 2 cut(s) 348, 516
Hpy166II GTNNAC 4 cut(s) 86, 158, 553, 606
Hpy188I TCNGA 4 cut(s) 246, 334, 579, 594
Hpy8I GTNNAC 4 cut(s) 86, 158, 553, 606
HpyAV CCTTC 2 cut(s) 113, 537
HpyCH4V TGCA 2 cut(s) 515, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 775
HpyF3I CTNAG 5 cut(s) 108, 272, 333, 463, 627
Hsp92II CATG 6 cut(s) 25, 36, 491, 591, 751, 767
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 3 cut(s) 61, 574, 744
Kzo9I GATC 3 cut(s) 61, 574, 744
LguI GCTCTTC 3 cut(s) 210, 291, 656
LmnI GCTCC 4 cut(s) 190, 261, 313, 343
Lsp1109I GCAGC 2 cut(s) 442, 620
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 471
MalI GATC 3 cut(s) 63, 576, 746
MboI GATC 3 cut(s) 61, 574, 744
MboII GAAGA 6 cut(s) 227, 278, 284, 419, 662, 673
MhlI GDGCHC 2 cut(s) 266, 286
MmeI TCCRAC 1 cut(s) 519
MnlI CCTC 7 cut(s) 279, 328, 357, 385, 421, 732, 765
MseI TTAA 2 cut(s) 447, 719
MslI CAYNNNNRTG 2 cut(s) 492, 690
MspA1I CMGCKG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 27, 567
MvaI CCWGG 2 cut(s) 27, 567
MwoI GCNNNNNNNGC 2 cut(s) 464, 775
NcoI CCATGG 1 cut(s) 32
NdeII GATC 3 cut(s) 61, 574, 744
NlaIII CATG 6 cut(s) 25, 36, 491, 591, 751, 767
NlaIV GGNNCC 2 cut(s) 101, 345
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 2 cut(s) 25, 491
PaeI GCATGC 1 cut(s) 25
PciSI GCTCTTC 3 cut(s) 210, 291, 656
PfeI GAWTC 2 cut(s) 53, 113
PkrI GCNGC 2 cut(s) 457, 635
PpuMI RGGWCCY 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 286
Psp5II RGGWCCY 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 25, 565
PspGI CCWGG 2 cut(s) 25, 565
PspN4I GGNNCC 2 cut(s) 101, 345
PspPI GGNCC 3 cut(s) 29, 99, 678
PspPPI RGGWCCY 1 cut(s) 678
PvuII CAGCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 2 cut(s) 492, 690
SacI GAGCTC 1 cut(s) 286
SapI GCTCTTC 3 cut(s) 210, 291, 656
SaqAI TTAA 2 cut(s) 447, 719
SatI GCNGC 2 cut(s) 456, 634
Sau3AI GATC 3 cut(s) 61, 574, 744
Sau96I GGNCC 3 cut(s) 29, 99, 678
ScrFI CCNGG 2 cut(s) 27, 567
SduI GDGCHC 2 cut(s) 266, 286
SfaNI GCATC 1 cut(s) 442
SinI GGWCC 2 cut(s) 29, 678
SmiMI CAYNNNNRTG 2 cut(s) 492, 690
SphI GCATGC 1 cut(s) 25
SsiI CCGC 2 cut(s) 311, 769
SspMI CTAG 1 cut(s) 471
SstI GAGCTC 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 25, 565
StyI CCWWGG 1 cut(s) 32
TfiI GAWTC 2 cut(s) 53, 113
Tru1I TTAA 2 cut(s) 447, 719
Tru9I TTAA 2 cut(s) 447, 719
TseI GCWGC 2 cut(s) 455, 633
TspDTI ATGAA 3 cut(s) 420, 510, 797
TspGWI ACGGA 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 29, 678
XagI CCTNNNNNAGG 1 cut(s) 107
XceI RCATGY 2 cut(s) 25, 491
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.