Rroxscaffold_2G00126800

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006140
Physical Location & Seq
Reverse (-)
62176248 .. 62179690
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126800.1

Sequence Viewer

Length: 1077 bp
ATGAATCTGGCGGGAAGGCTTTTGTGGTTTTGGCGGGAGCGGATTGGCCCCTTACTGAGGAATCTGTGCCACCCGAATCTGCTTCAATGTAGTGCTTGTGGAAGTAAACTATGTCTTGTAGCGCAGTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGCGGAGCAATCCAATACCACTTCTCAGGAAGTGGTGCCAATGACTTCACCGTCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGATATCGATTTGGAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGCTTTGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCATTGCCTTCAAGTCAGTTGGAAAAAGTGGTAGCCGCTAATACTCCTGTTTTTTTTTTCCGTGTCCAGAAGCTGCCACTTCATGGTTTCAAATTCTTCTTGGCTGTTGAACATAATATAGTGACAATGGAGAAATTGCACAGATGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATAAAAAATAACTCAAATGATGAGGATGATGCACAAAGTGAAACATGGGCAGAGGAAGCTTATGAATATGATAAAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTGAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCACTCCAAGCTACACAAGCCGAAGGCGACCCTGGGAGATGTACATTGTGTGGTGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCATTATTGTATTTTCTACAAGGAGCTGCTGATGATTGCCAAAGACGGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATATACTTGTTCCCAGAGCTGTTCCCAACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

358

Amino Acids

40.65

Weight (kDa)

6.32

Isoelectric Point (pI)

45.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 238 - 351 1.4e-28 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 473
AccBSI CCGCTC 1 cut(s) 40
AciI CCGC 5 cut(s) 11, 34, 40, 182, 426
AclWI GGATC 1 cut(s) 853
AcsI RAATTY 2 cut(s) 482, 1003
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 832, 1050
AfiI CCNNNNNNNGG 3 cut(s) 57, 473, 1071
AflII CTTAAG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 8 cut(s) 86, 167, 246, 402, 481, 500, 578, 1008
AjnI CCWGG 1 cut(s) 820
Alw21I GWGCWC 2 cut(s) 137, 157
AlwI GGATC 1 cut(s) 853
AlwNI CAGNNNCTG 2 cut(s) 463, 537
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 5 cut(s) 326, 463, 537, 865, 902
ApoI RAATTY 2 cut(s) 482, 1003
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 1071
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 137, 157
BbvI GCAGC 5 cut(s) 313, 450, 524, 877, 889
BccI CCATC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 822
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 1 cut(s) 1071
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 708
BfrI CTTAAG 1 cut(s) 725
BisI GCNGC 6 cut(s) 327, 426, 464, 538, 866, 903
BlsI GCNGC 6 cut(s) 328, 427, 465, 539, 867, 904
Bme1390I CCNGG 2 cut(s) 822, 1071
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 49, 216
BmrFI CCNGG 2 cut(s) 822, 1071
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 4 cut(s) 169, 524, 580, 643
BmuI ACTGGG 1 cut(s) 1023
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 1 cut(s) 950
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 1071
Bsa29I ATCGAT 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 820, 821, 1070
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 473, 1071
Bse1I ACTGG 4 cut(s) 933, 941, 947, 1018
Bse3DI GCAATG 1 cut(s) 392
BseBI CCWGG 1 cut(s) 822
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 820, 821, 1070
BseGI GGATG 4 cut(s) 277, 655, 751, 951
BseLI CCNNNNNNNGG 3 cut(s) 57, 473, 1071
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 2 cut(s) 47, 218
BseNI ACTGG 4 cut(s) 933, 941, 947, 1018
BseRI GAGGAG 2 cut(s) 129, 314
BseXI GCAGC 5 cut(s) 313, 450, 524, 877, 889
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 214
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 137, 157
BsiSI CCGG 1 cut(s) 1070
BslI CCNNNNNNNGG 3 cut(s) 57, 473, 1071
BsnI GGCC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 137, 157
Bsp1407I TGTACA 2 cut(s) 830, 1048
Bsp143I GATC 2 cut(s) 845, 994
BspACI CCGC 5 cut(s) 11, 34, 40, 182, 426
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 48, 217
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 49, 216
BspMAI CTGCAG 1 cut(s) 712
BspPI GGATC 1 cut(s) 853
BspQI GCTCTTC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 214
BspTI CTTAAG 1 cut(s) 725
BsrBI CCGCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 392
BsrGI TGTACA 2 cut(s) 830, 1048
BsrI ACTGG 4 cut(s) 933, 941, 947, 1018
BssECI CCNNGG 3 cut(s) 820, 821, 1070
BssMI GATC 2 cut(s) 845, 994
Bst2UI CCWGG 1 cut(s) 822
Bst4CI ACNGT 2 cut(s) 231, 924
Bst6I CTCTTC 2 cut(s) 162, 560
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 871
BstAUI TGTACA 2 cut(s) 830, 1048
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 149, 153, 331
BstDEI CTNAG 3 cut(s) 56, 143, 204
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 4 cut(s) 277, 655, 751, 951
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 848, 997
BstMBI GATC 2 cut(s) 845, 994
BstMWI GCNNNNNNNGC 5 cut(s) 335, 680, 707, 806, 871
BstNI CCWGG 1 cut(s) 822
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 820, 1069
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 313, 450, 524, 877, 889
BstV2I GAAGAC 1 cut(s) 155
Bsu15I ATCGAT 1 cut(s) 291
BsuRI GGCC 1 cut(s) 48
BsuTUI ATCGAT 1 cut(s) 291
BtgZI GCGATG 1 cut(s) 600
BtsCI GGATG 4 cut(s) 277, 655, 751, 951
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 131, 926, 1011
Cac8I GCNNGC 3 cut(s) 149, 153, 331
CaiI CAGNNNCTG 2 cut(s) 463, 537
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 2 cut(s) 831, 1049
CviAII CATG 3 cut(s) 359, 473, 669
CviQI GTAC 2 cut(s) 831, 1049
DdeI CTNAG 3 cut(s) 56, 143, 204
DpnI GATC 2 cut(s) 847, 996
DpnII GATC 2 cut(s) 845, 994
DraIII CACNNNGTG 1 cut(s) 662
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 162, 560
EarI CTCTTC 2 cut(s) 162, 560
Ecl136II GAGCTC 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 157
Eco32I GATATC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 820
EcoRV GATATC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 157
FaeI CATG 3 cut(s) 362, 476, 672
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FatI CATG 3 cut(s) 358, 472, 668
FauI CCCGC 2 cut(s) 4, 27
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 6 cut(s) 327, 426, 464, 538, 866, 903
FokI GGATG 4 cut(s) 284, 662, 758, 958
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 6 cut(s) 327, 426, 464, 538, 866, 903
FspBI CTAG 1 cut(s) 1055
GlaI GCGC 1 cut(s) 123
GluI GCNGC 6 cut(s) 327, 426, 464, 538, 866, 903
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 1070
HhaI GCGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 362, 476, 672
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HindIII AAGCTT 2 cut(s) 681, 699
HinfI GANTC 3 cut(s) 4, 61, 76
HpaII CCGG 1 cut(s) 1070
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 2 cut(s) 107, 751
Hpy188I TCNGA 1 cut(s) 770
Hpy188III TCNNGA 3 cut(s) 206, 457, 562
Hpy8I GTNNAC 2 cut(s) 107, 751
HpyAV CCTTC 3 cut(s) 9, 408, 806
HpyCH4III ACNGT 2 cut(s) 231, 924
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 5 cut(s) 386, 529, 656, 710, 865
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 680, 707, 806, 871
HpyF3I CTNAG 3 cut(s) 56, 143, 204
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 3 cut(s) 362, 476, 672
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 2 cut(s) 845, 994
LguI GCTCTTC 1 cut(s) 162
LmnI GCTCC 4 cut(s) 37, 132, 184, 899
Lsp1109I GCAGC 5 cut(s) 313, 450, 524, 877, 889
LweI GCATC 4 cut(s) 169, 524, 580, 643
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 3 cut(s) 511, 924, 1027
MalI GATC 2 cut(s) 847, 996
MbiI CCGCTC 1 cut(s) 40
MboI GATC 2 cut(s) 845, 994
MboII GAAGA 6 cut(s) 149, 155, 290, 478, 566, 577
MhlI GDGCHC 2 cut(s) 137, 157
MluCI AATT 4 cut(s) 170, 482, 524, 1003
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 9 cut(s) 51, 150, 256, 292, 561, 640, 670, 885, 1027
MroXI GAANNNNTTC 1 cut(s) 1041
MseI TTAA 3 cut(s) 318, 726, 732
MslI CAYNNNNRTG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 1 cut(s) 1070
MspR9I CCNGG 2 cut(s) 822, 1071
MvaI CCWGG 1 cut(s) 822
MwoI GCNNNNNNNGC 5 cut(s) 335, 680, 707, 806, 871
NciI CCSGG 1 cut(s) 1071
NdeI CATATG 1 cut(s) 778
NdeII GATC 2 cut(s) 845, 994
NlaIII CATG 3 cut(s) 362, 476, 672
NlaIV GGNNCC 2 cut(s) 49, 216
NmuCI GTSAC 3 cut(s) 511, 924, 1027
NspI RCATGY 1 cut(s) 362
NspV TTCGAA 1 cut(s) 605
PasI CCCWGGG 1 cut(s) 821
PciI ACATGT 1 cut(s) 358
PciSI GCTCTTC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 3 cut(s) 4, 61, 76
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 6 cut(s) 328, 427, 465, 539, 867, 904
PscI ACATGT 1 cut(s) 358
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 820
PspGI CCWGG 1 cut(s) 820
PspN4I GGNNCC 2 cut(s) 49, 216
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 712
PstNI CAGNNNCTG 2 cut(s) 463, 537
RsaI GTAC 2 cut(s) 832, 1050
RsaNI GTAC 2 cut(s) 831, 1049
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 3 cut(s) 318, 726, 732
SatI GCNGC 6 cut(s) 327, 426, 464, 538, 866, 903
Sau3AI GATC 2 cut(s) 845, 994
Sau96I GGNCC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 822, 1071
SduI GDGCHC 2 cut(s) 137, 157
SfaNI GCATC 4 cut(s) 169, 524, 580, 643
SfcI CTRYAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 560, 725
SmoI CTYRAG 2 cut(s) 560, 725
Sse9I AATT 4 cut(s) 170, 482, 524, 1003
SsiI CCGC 5 cut(s) 11, 34, 40, 182, 426
SspMI CTAG 1 cut(s) 1055
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 820, 1069
TaaI ACNGT 2 cut(s) 231, 924
TaiI ACGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 291, 605
TasI AATT 4 cut(s) 170, 482, 524, 1003
TatI WGTACW 2 cut(s) 830, 1048
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 3 cut(s) 4, 61, 76
Tru1I TTAA 3 cut(s) 318, 726, 732
Tru9I TTAA 3 cut(s) 318, 726, 732
TscAI CASTG 3 cut(s) 131, 933, 1018
TseFI GTSAC 3 cut(s) 511, 924, 1027
TseI GCWGC 5 cut(s) 326, 463, 537, 865, 902
Tsp45I GTSAC 3 cut(s) 511, 924, 1027
TspDTI ATGAA 7 cut(s) 17, 291, 381, 461, 702, 765, 873
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 3 cut(s) 131, 933, 1018
Van91I CCANNNNNTGG 1 cut(s) 473
Vha464I CTTAAG 1 cut(s) 725
XagI CCTNNNNNAGG 1 cut(s) 55
XapI RAATTY 2 cut(s) 482, 1003
XceI RCATGY 1 cut(s) 362
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.