Rh2BG277400

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006140
Physical Location & Seq
Forward (+)
30268953 .. 30272541
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG277400.1

Sequence Viewer

Length: 888 bp
ATGGCAAACTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGTGGTGCAATCAAATACCACTTCTCAGGAAGTGGTGCCAGTGACTTCACCATCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGATATCGATTTGGAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGCTTCGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCAGTGCCTTCAAGTCAGTTGGAAAAAGTGGCAGATGCTAATACACCTGTGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATCAAAAATAACTCAAATGATGAGGATGATGCACAAAGTGAAACATGGGCAGAGGAAGCTTATGAATATGATACAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTGAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCACTCCTAGCTACACAAGCTGAAGGCGACCCTGGGAGATGTACATTGTGTGGCGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCACTATTATATTTTCTACAAGGAGCTGCTGATGATTGCCAAAGACAGTCACTGGAGAACTGGAACTGGATGACACTTATGTTATATACTTGTTCCCAGAGCTGTTCTCAACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCCGGGGTAGCCGAACATAGCTATTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

295

Amino Acids

32.94

Weight (kDa)

4.62

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 167 - 280 1.2e-28 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AciI CCGC 1 cut(s) 630
AclWI GGATC 1 cut(s) 640
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 1 cut(s) 618
AdeI CACNNNGTG 1 cut(s) 449
AfaI GTAC 2 cut(s) 619, 837
AfiI CCNNNNNNNGG 1 cut(s) 858
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 5 cut(s) 50, 129, 285, 366, 795
AjnI CCWGG 1 cut(s) 607
Alw21I GWGCWC 2 cut(s) 20, 40
AlwI GGATC 1 cut(s) 640
AlwNI CAGNNNCTG 1 cut(s) 715
Ama87I CYCGRG 1 cut(s) 857
ApeKI GCWGC 4 cut(s) 209, 325, 652, 689
ApoI RAATTY 1 cut(s) 790
Asp700I GAANNNNTTC 1 cut(s) 828
AsuC2I CCSGG 2 cut(s) 858, 859
AsuHPI GGTGA 1 cut(s) 102
AsuII TTCGAA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 857
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 20, 40
BbvI GCAGC 4 cut(s) 196, 312, 664, 676
BccI CCATC 3 cut(s) 121, 158, 419
BciT130I CCWGG 1 cut(s) 609
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 2 cut(s) 858, 859
BfaI CTAG 2 cut(s) 584, 842
BfmI CTRYAG 1 cut(s) 495
BfrI CTTAAG 1 cut(s) 512
BisI GCNGC 4 cut(s) 210, 326, 653, 690
BlsI GCNGC 4 cut(s) 211, 327, 654, 691
Bme1390I CCNGG 3 cut(s) 609, 858, 859
BmeT110I CYCGRG 1 cut(s) 857
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 3 cut(s) 609, 858, 859
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 3 cut(s) 298, 368, 430
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 4 cut(s) 7, 39, 754, 786
BpmI CTGGAG 1 cut(s) 737
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 333
BpuMI CCSGG 2 cut(s) 858, 859
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 607, 608, 857, 858
Bsc4I CCNNNNNNNGG 1 cut(s) 858
Bse1I ACTGG 6 cut(s) 101, 275, 720, 728, 734, 805
BseBI CCWGG 1 cut(s) 609
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 4 cut(s) 607, 608, 857, 858
BseGI GGATG 4 cut(s) 160, 442, 538, 738
BseLI CCNNNNNNNGG 1 cut(s) 858
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 6 cut(s) 101, 275, 720, 728, 734, 805
BseRI GAGGAG 2 cut(s) 12, 197
BseXI GCAGC 4 cut(s) 196, 312, 664, 676
BshNI GGYRCC 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 20, 40
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 1 cut(s) 858
BslI CCNNNNNNNGG 1 cut(s) 858
BsoBI CYCGRG 1 cut(s) 857
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 20, 40
Bsp1407I TGTACA 2 cut(s) 617, 835
Bsp143I GATC 2 cut(s) 632, 781
BspACI CCGC 1 cut(s) 630
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 1 cut(s) 640
BspQI GCTCTTC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 97
BspTI CTTAAG 1 cut(s) 512
BsrGI TGTACA 2 cut(s) 617, 835
BsrI ACTGG 6 cut(s) 101, 275, 720, 728, 734, 805
BssECI CCNNGG 4 cut(s) 607, 608, 857, 858
BssMI GATC 2 cut(s) 632, 781
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 2 cut(s) 11, 711
Bst6I CTCTTC 2 cut(s) 45, 348
BstAFI CTTAAG 1 cut(s) 512
BstAPI GCANNNNNTGC 1 cut(s) 658
BstAUI TGTACA 2 cut(s) 617, 835
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 32, 36, 214
BstDEI CTNAG 2 cut(s) 26, 87
BstF5I GGATG 4 cut(s) 160, 442, 538, 738
BstKTI GATC 2 cut(s) 635, 784
BstMBI GATC 2 cut(s) 632, 781
BstMWI GCNNNNNNNGC 5 cut(s) 218, 467, 494, 593, 658
BstNI CCWGG 1 cut(s) 609
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 607, 856, 857
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 4 cut(s) 196, 312, 664, 676
BstV2I GAAGAC 1 cut(s) 38
Bsu15I ATCGAT 1 cut(s) 174
BsuTUI ATCGAT 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 4 cut(s) 160, 442, 538, 738
BtsIMutI CAGTG 4 cut(s) 108, 282, 713, 798
Cac8I GCNNGC 3 cut(s) 32, 36, 214
CaiI CAGNNNCTG 1 cut(s) 715
Cfr9I CCCGGG 1 cut(s) 857
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 2 cut(s) 618, 836
CviAII CATG 2 cut(s) 242, 456
CviQI GTAC 2 cut(s) 618, 836
DdeI CTNAG 2 cut(s) 26, 87
DpnI GATC 2 cut(s) 634, 783
DpnII GATC 2 cut(s) 632, 781
DraIII CACNNNGTG 1 cut(s) 449
Eam1104I CTCTTC 2 cut(s) 45, 348
EarI CTCTTC 2 cut(s) 45, 348
EciI GGCGGA 1 cut(s) 645
Ecl136II GAGCTC 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 40
Eco32I GATATC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 607
EcoRV GATATC 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 2 cut(s) 245, 459
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FatI CATG 2 cut(s) 241, 455
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 781
Fnu4HI GCNGC 4 cut(s) 210, 326, 653, 690
FokI GGATG 4 cut(s) 167, 449, 545, 745
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 210, 326, 653, 690
FspBI CTAG 2 cut(s) 584, 842
GluI GCNGC 4 cut(s) 210, 326, 653, 690
GsuI CTGGAG 1 cut(s) 737
HapII CCGG 1 cut(s) 858
Hin1II CATG 2 cut(s) 245, 459
HindIII AAGCTT 1 cut(s) 468
HpaII CCGG 1 cut(s) 858
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 2 cut(s) 89, 350
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 2 cut(s) 291, 593
HpyCH4III ACNGT 2 cut(s) 11, 711
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 70, 269, 443, 497, 652
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 467, 494, 593, 658
HpyF3I CTNAG 2 cut(s) 26, 87
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 245, 459
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 2 cut(s) 632, 781
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 2 cut(s) 15, 686
Lsp1109I GCAGC 4 cut(s) 196, 312, 664, 676
LweI GCATC 3 cut(s) 298, 368, 430
MaeI CTAG 2 cut(s) 584, 842
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 3 cut(s) 103, 711, 814
MalI GATC 2 cut(s) 634, 783
MboI GATC 2 cut(s) 632, 781
MboII GAAGA 5 cut(s) 32, 38, 173, 354, 365
MhlI GDGCHC 2 cut(s) 20, 40
MluCI AATT 2 cut(s) 53, 790
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 8 cut(s) 33, 139, 175, 349, 427, 457, 672, 814
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 3 cut(s) 201, 513, 519
MslI CAYNNNNRTG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 858
MspR9I CCNGG 3 cut(s) 609, 858, 859
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 5 cut(s) 218, 467, 494, 593, 658
NciI CCSGG 2 cut(s) 858, 859
NdeI CATATG 1 cut(s) 565
NdeII GATC 2 cut(s) 632, 781
NlaIII CATG 2 cut(s) 245, 459
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 3 cut(s) 103, 711, 814
NspI RCATGY 1 cut(s) 245
NspV TTCGAA 1 cut(s) 392
PasI CCCWGGG 1 cut(s) 608
PciI ACATGT 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 828
PkrI GCNGC 4 cut(s) 211, 327, 654, 691
PscI ACATGT 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspN4I GGNNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 715
RsaI GTAC 2 cut(s) 619, 837
RsaNI GTAC 2 cut(s) 618, 836
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 201, 513, 519
SatI GCNGC 4 cut(s) 210, 326, 653, 690
Sau3AI GATC 2 cut(s) 632, 781
ScrFI CCNGG 3 cut(s) 609, 858, 859
SduI GDGCHC 2 cut(s) 20, 40
SfaNI GCATC 3 cut(s) 298, 368, 430
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 392
SmaI CCCGGG 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 2 cut(s) 348, 512
SmoI CTYRAG 2 cut(s) 348, 512
Sse9I AATT 2 cut(s) 53, 790
SsiI CCGC 1 cut(s) 630
SspMI CTAG 2 cut(s) 584, 842
SstI GAGCTC 1 cut(s) 40
StyD4I CCNGG 3 cut(s) 607, 856, 857
TaaI ACNGT 2 cut(s) 11, 711
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 174, 392
TasI AATT 2 cut(s) 53, 790
TatI WGTACW 2 cut(s) 617, 835
Tru1I TTAA 3 cut(s) 201, 513, 519
Tru9I TTAA 3 cut(s) 201, 513, 519
TscAI CASTG 4 cut(s) 108, 282, 720, 805
TseFI GTSAC 3 cut(s) 103, 711, 814
TseI GCWGC 4 cut(s) 209, 325, 652, 689
Tsp45I GTSAC 3 cut(s) 103, 711, 814
TspDTI ATGAA 6 cut(s) 174, 264, 489, 552, 660, 870
TspMI CCCGGG 1 cut(s) 857
TspRI CASTG 4 cut(s) 108, 282, 720, 805
Vha464I CTTAAG 1 cut(s) 512
XapI RAATTY 1 cut(s) 790
XceI RCATGY 1 cut(s) 245
XmaI CCCGGG 1 cut(s) 857
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 2 cut(s) 584, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.