Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006140

Physical Location & Seq

Genomic Coordinates Reverse (-)

19711800 .. 19713376

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0209700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCAAACCCCGCAAGTCCGCAACAACGTCCACCATATCGTTCTTCAGCGAAAGTTGAAAGTATCTTTCAATGGCGGGAAAGCACATACCGGAAGATATTATATAGTGGACATCCTATCCAGTTAGCCAAGGTTCAGTTTAAAGTAGCTTCTGAGCAGAAAACTCTGAGTCGCAGACTCCTCCTCTACCGCAACACCTCTGAAATTGAATCCTTAGACTTAGAGACGCCGTGGCATGGAGACAATCATTCTCTTAGAAAGCTTAACGGTCCATTCAAGAATGGGGAATGGTCCGGTTCTGTCGATGTACTAGGCTCTTGCAATGGTTTGGTTCCTGTACGTGGAGGATGCCTGTATGGGTTTCGTTATAGCTTGAGCCTGAGTACGAGACGCTTCTCTTCCCATTCTTGGCTACCGAAACTATACAGTACAGTTGTGGCGAAGTGGACTTTGAAGGACTTCAGGATGGAAATTATAAGGATTGAACATGAAGAGGAGCCACTTGTTACAGACAGGCTTCAGAGGAGGAATGATATTCATTGCATGATTATATATGAAAAGAGTCTACTTCGGGTTCCTGATTATCATGCGGTGGAAGAATACAAGGTGAAAGAAACTGAAAGCCCAACAAAGCTGAAATCAATAGGAATAATTGCTAGCTCCCTTGCTCTGTTCAAGTACGGCTGGTTTGATTATCATCATTTTCACTCTAGCTTATTTTGCATTCTTTTAGGTCCTTATTCAAATCTTAAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C

Protein Analysis

252

Amino Acids

29.27

Weight (kDa)

9.41

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64830 AT5G64830 AT5G64830
fragaria_vesca	FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740
malus_domestica	MD15G1331600.v1.1
prunus_persica	Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1
pyrus_communis	pycom15g29340
rosa_chinensis	RchiOBHm_Chr2g0117041
rosa_laevigata	RLG00000018321
rosa_multiflora	Rmu_ssc0000238.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126800
rosa_rugosa	Rorug02G0209700
rosa_samantha	Rh2AG265600 Rh2BG277400 Rh2DG272900 Rh2DG291900
rosa_wichuraiana	Rw0G019120 Rw2G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	565
AciI	CCGC	5 cut(s)	12, 20, 76, 190, 590
AcuI	CTGAAG	3 cut(s)	30, 445, 503
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	5 cut(s)	309, 339, 385, 430, 680
AfiI	CCNNNNNNNGG	3 cut(s)	236, 341, 408
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	8 cut(s)	59, 71, 209, 277, 454, 485, 676, 744
AluBI	AGCT	6 cut(s)	149, 262, 372, 634, 660, 714
AluI	AGCT	6 cut(s)	149, 262, 372, 634, 660, 714
Alw26I	GTCTC	3 cut(s)	218, 234, 382
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	269, 291, 734
AsuHPI	GGTGA	1 cut(s)	619
AsuNHI	GCTAGC	1 cut(s)	656
AvaII	GGWCC	3 cut(s)	269, 291, 734
BccI	CCATC	1 cut(s)	460
BceAI	ACGGC	2 cut(s)	214, 697
BcoDI	GTCTC	3 cut(s)	218, 234, 382
BfaI	CTAG	3 cut(s)	311, 657, 711
BfrI	CTTAAG	1 cut(s)	749
Bme18I	GGWCC	3 cut(s)	269, 291, 734
BmgT120I	GGNCC	3 cut(s)	269, 291, 734
BmiI	GGNNCC	3 cut(s)	333, 498, 576
BmsI	GCATC	1 cut(s)	338
BmtI	GCTAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	129, 230
BsaWI	WCCGGW	2 cut(s)	90, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 341, 408
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	2 cut(s)	328, 538
Bse8I	GATNNNNATC	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	129, 230
BseGI	GGATG	3 cut(s)	112, 353, 471
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	3 cut(s)	236, 341, 408
BseMI	GCAATG	2 cut(s)	328, 538
BseMII	CTCAG	3 cut(s)	144, 158, 371
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	4 cut(s)	170, 173, 509, 538
BsiSI	CCGG	2 cut(s)	91, 294
BslI	CCNNNNNNNGG	3 cut(s)	236, 341, 408
BsmAI	GTCTC	3 cut(s)	218, 234, 382
BsmBI	CGTCTC	2 cut(s)	218, 382
BsmI	GAATGC	1 cut(s)	723
BspACI	CCGC	5 cut(s)	12, 20, 76, 190, 590
BspCNI	CTCAG	3 cut(s)	145, 159, 372
BspLI	GGNNCC	3 cut(s)	333, 498, 576
BspOI	GCTAGC	1 cut(s)	660
BspTI	CTTAAG	1 cut(s)	749
BsrDI	GCAATG	2 cut(s)	328, 538
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	2 cut(s)	129, 230
BssNI	GRCGYC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	3 cut(s)	269, 428, 433
Bst6I	CTCTTC	2 cut(s)	403, 486
BstACI	GRCGYC	1 cut(s)	227
BstAFI	CTTAAG	1 cut(s)	749
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	6 cut(s)	153, 167, 214, 220, 254, 380
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	3 cut(s)	112, 353, 471
BstMAI	GTCTC	3 cut(s)	218, 234, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 720
BtgI	CCRYGG	1 cut(s)	230
BtsCI	GGATG	3 cut(s)	112, 353, 471
Cac8I	GCNNGC	1 cut(s)	658
Cfr13I	GGNCC	3 cut(s)	269, 291, 734
CseI	GACGC	2 cut(s)	235, 399
Csp6I	GTAC	5 cut(s)	308, 338, 384, 429, 679
CviAII	CATG	4 cut(s)	236, 488, 544, 587
CviQI	GTAC	5 cut(s)	308, 338, 384, 429, 679
DdeI	CTNAG	6 cut(s)	153, 167, 214, 220, 254, 380
DraI	TTTAAA	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	403, 486
EarI	CTCTTC	2 cut(s)	403, 486
Eco130I	CCWWGG	1 cut(s)	129
Eco47I	GGWCC	3 cut(s)	269, 291, 734
Eco57I	CTGAAG	3 cut(s)	30, 445, 503
EcoO109I	RGGNCCY	1 cut(s)	734
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	2 cut(s)	218, 382
FaeI	CATG	4 cut(s)	239, 491, 547, 590
FatI	CATG	4 cut(s)	235, 487, 543, 586
FauI	CCCGC	2 cut(s)	19, 69
FblI	GTMKAC	1 cut(s)	565
FokI	GGATG	3 cut(s)	99, 360, 478
FspBI	CTAG	3 cut(s)	311, 657, 711
HapII	CCGG	2 cut(s)	91, 294
HgaI	GACGC	2 cut(s)	235, 399
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	4 cut(s)	239, 491, 547, 590
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	4 cut(s)	169, 177, 209, 562
HpaII	CCGG	2 cut(s)	91, 294
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	4 cut(s)	32, 110, 447, 566
Hpy188I	TCNGA	4 cut(s)	154, 168, 202, 522
Hpy188III	TCNNGA	3 cut(s)	277, 463, 578
Hpy8I	GTNNAC	4 cut(s)	32, 110, 447, 566
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	3 cut(s)	269, 428, 433
HpyCH4IV	ACGT	2 cut(s)	28, 340
HpyCH4V	TGCA	3 cut(s)	321, 543, 723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 720
HpyF3I	CTNAG	6 cut(s)	153, 167, 214, 220, 254, 380
HpySE526I	ACGT	2 cut(s)	28, 340
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	4 cut(s)	239, 491, 547, 590
LmnI	GCTCC	2 cut(s)	496, 665
LweI	GCATC	1 cut(s)	338
MaeI	CTAG	3 cut(s)	311, 657, 711
MaeII	ACGT	2 cut(s)	28, 340
MaeIII	GTNAC	1 cut(s)	505
MboII	GAAGA	5 cut(s)	36, 106, 390, 503, 608
MluCI	AATT	3 cut(s)	204, 471, 651
MlyI	GAGTC	3 cut(s)	171, 178, 571
MnlI	CCTC	7 cut(s)	191, 194, 208, 338, 487, 516, 519
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	3 cut(s)	141, 264, 750
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	2 cut(s)	91, 294
Mva1269I	GAATGC	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	11, 720
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	4 cut(s)	239, 491, 547, 590
NlaIV	GGNNCC	3 cut(s)	333, 498, 576
PctI	GAATGC	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	209
PleI	GAGTC	3 cut(s)	171, 177, 570
PpsI	GAGTC	3 cut(s)	171, 177, 570
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	734
PsiI	TTATAA	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	734
PspN4I	GGNNCC	3 cut(s)	333, 498, 576
PspPI	GGNCC	3 cut(s)	269, 291, 734
PspPPI	RGGWCCY	1 cut(s)	734
RsaI	GTAC	5 cut(s)	309, 339, 385, 430, 680
RsaNI	GTAC	5 cut(s)	308, 338, 384, 429, 679
SaqAI	TTAA	3 cut(s)	141, 264, 750
Sau96I	GGNCC	3 cut(s)	269, 291, 734
SchI	GAGTC	3 cut(s)	171, 178, 571
SfaNI	GCATC	1 cut(s)	338
SinI	GGWCC	3 cut(s)	269, 291, 734
SmlI	CTYRAG	2 cut(s)	373, 749
SmoI	CTYRAG	2 cut(s)	373, 749
Sse9I	AATT	3 cut(s)	204, 471, 651
SsiI	CCGC	5 cut(s)	12, 20, 76, 190, 590
SspMI	CTAG	3 cut(s)	311, 657, 711
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	3 cut(s)	269, 428, 433
TaiI	ACGT	2 cut(s)	31, 343
TaqI	TCGA	1 cut(s)	303
TasI	AATT	3 cut(s)	204, 471, 651
TatI	WGTACW	2 cut(s)	307, 428
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	3 cut(s)	141, 264, 750
Tru9I	TTAA	3 cut(s)	141, 264, 750
TspDTI	ATGAA	3 cut(s)	504, 527, 570
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	3 cut(s)	269, 291, 734
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	3 cut(s)	311, 657, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.