Rh2DG272900

Programmed cell death protein 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006140
Physical Location & Seq
Forward (+)
30322318 .. 30325221
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG272900.1

Sequence Viewer

Length: 1155 bp
ATGTTTTTAGTGGCGTTAGTGATGGCGAAAGTCCTATTAGGCATGCCGGGACCATGGGCTGATGATTTTCGTGAATCATCTGATCATTATACAGCGAAAATTGGTGGACTACCTGATTGGCCCCTTACTGAGGAATCTGTGCCACCGAATCTGCTTCAATGTAGTGCTTGTGGAAGTCGACTATGTCTTGTTGCGCAGGTTTATGCTCCAGTTTCAAGTGAAAACTTAAGAGTTGAAGAGCGTGTTCTTTTTGTTTTTGGTTGTCTGATGGCAAACTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGTGGTGCAATCAAATACCACTTCTCAGGAAGTGGTGCCAGTGACTTCACCATCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGGTATCGATTTGGAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGCTTCGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCATTGCCCTCAAGGCAGTTGGAAAAAGTGGCAGACGCTAATACACCTGTGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATAAAAAATAACTCAAATGATGAGGATGACGCACAAAGTGAAACATGGGCAGAGGAAGCTTATGAATATGATAAAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTGAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCACTCCTAGCTACACAAGCCGAAGGCGACCCTGGGAGATGTACATTGTGTGGTGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCATTATTATATTTTCTACAAGGAGCTGCCGATGATTGCCAAAGACGGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATATACTTGTTCCCAGAGCTGTTCTCAACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCCGGGGTAGCCGAACATAGCTATTCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDCD2_C

Protein Analysis

384

Amino Acids

42.74

Weight (kDa)

4.79

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD2_C PF04194 256 - 369 3.4e-29 Programmed cell death protein 2, C-terminal putative domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 364
AccI GTMKAC 1 cut(s) 178
AclWI GGATC 1 cut(s) 907
AcsI RAATTY 1 cut(s) 1057
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 2 cut(s) 886, 1104
AfiI CCNNNNNNNGG 2 cut(s) 130, 1125
AflII CTTAAG 2 cut(s) 226, 779
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 7 cut(s) 158, 216, 236, 317, 396, 633, 1062
AjnI CCWGG 1 cut(s) 874
Alw21I GWGCWC 2 cut(s) 287, 307
AlwI GGATC 1 cut(s) 907
Ama87I CYCGRG 1 cut(s) 1124
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 476, 592, 919, 956
ApoI RAATTY 1 cut(s) 1057
Asp700I GAANNNNTTC 1 cut(s) 1095
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 2 cut(s) 50, 120
AsuC2I CCSGG 3 cut(s) 48, 1125, 1126
AsuHPI GGTGA 1 cut(s) 369
AsuII TTCGAA 1 cut(s) 659
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 287, 307
BbvI GCAGC 4 cut(s) 463, 579, 931, 943
BccI CCATC 4 cut(s) 16, 262, 388, 425
BciT130I CCWGG 1 cut(s) 876
BclI TGATCA 2 cut(s) 82, 1048
BcnI CCSGG 3 cut(s) 48, 1125, 1126
BfaI CTAG 2 cut(s) 851, 1109
BfmI CTRYAG 1 cut(s) 762
BfrI CTTAAG 2 cut(s) 226, 779
BfuAI ACCTGC 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 553
BisI GCNGC 4 cut(s) 477, 593, 920, 957
BlsI GCNGC 4 cut(s) 478, 594, 921, 958
Bme1390I CCNGG 4 cut(s) 48, 876, 1125, 1126
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 2 cut(s) 50, 120
BmiI GGNNCC 3 cut(s) 51, 122, 366
BmrFI CCNGG 4 cut(s) 48, 876, 1125, 1126
BmrI ACTGGG 1 cut(s) 1077
BmsI GCATC 1 cut(s) 635
BmuI ACTGGG 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 4 cut(s) 274, 306, 1021, 1053
BpmI CTGGAG 2 cut(s) 192, 1004
Bpu14I TTCGAA 1 cut(s) 659
BpuEI CTTGAG 2 cut(s) 535, 600
BpuMI CCSGG 3 cut(s) 48, 1125, 1126
Bsa29I ATCGAT 1 cut(s) 441
BsaJI CCNNGG 5 cut(s) 53, 874, 875, 1124, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 1125
Bse1I ACTGG 6 cut(s) 209, 368, 987, 995, 1001, 1072
Bse3DI GCAATG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 876
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 5 cut(s) 53, 874, 875, 1124, 1125
BseGI GGATG 4 cut(s) 427, 709, 805, 1005
BseLI CCNNNNNNNGG 2 cut(s) 130, 1125
BseMI GCAATG 1 cut(s) 542
BseMII CTCAG 2 cut(s) 120, 368
BseNI ACTGG 6 cut(s) 209, 368, 987, 995, 1001, 1072
BseRI GAGGAG 2 cut(s) 279, 464
BseXI GCAGC 4 cut(s) 463, 579, 931, 943
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 441
BsiHKAI GWGCWC 2 cut(s) 287, 307
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 2 cut(s) 47, 1125
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 130, 1125
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 1124
Bsp119I TTCGAA 1 cut(s) 659
Bsp1286I GDGCHC 2 cut(s) 287, 307
Bsp1407I TGTACA 2 cut(s) 884, 1102
Bsp143I GATC 3 cut(s) 82, 899, 1048
Bsp19I CCATGG 1 cut(s) 53
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 121, 367
BspDI ATCGAT 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 51, 122, 366
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 907
BspQI GCTCTTC 2 cut(s) 231, 312
BspT104I TTCGAA 1 cut(s) 659
BspT107I GGYRCC 1 cut(s) 364
BspTI CTTAAG 2 cut(s) 226, 779
BsrDI GCAATG 1 cut(s) 542
BsrGI TGTACA 2 cut(s) 884, 1102
BsrI ACTGG 6 cut(s) 209, 368, 987, 995, 1001, 1072
BssECI CCNNGG 5 cut(s) 53, 874, 875, 1124, 1125
BssMI GATC 3 cut(s) 82, 899, 1048
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 2 cut(s) 278, 978
Bst6I CTCTTC 3 cut(s) 231, 312, 615
BstAFI CTTAAG 2 cut(s) 226, 779
BstAPI GCANNNNNTGC 1 cut(s) 925
BstAUI TGTACA 2 cut(s) 884, 1102
BstBI TTCGAA 1 cut(s) 659
BstC8I GCNNGC 4 cut(s) 44, 299, 303, 481
BstDEI CTNAG 3 cut(s) 129, 293, 354
BstDSI CCRYGG 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 128
BstF5I GGATG 4 cut(s) 427, 709, 805, 1005
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 3 cut(s) 85, 902, 1051
BstMBI GATC 3 cut(s) 82, 899, 1048
BstMWI GCNNNNNNNGC 6 cut(s) 485, 553, 734, 761, 860, 925
BstNI CCWGG 1 cut(s) 876
BstNSI RCATGY 2 cut(s) 46, 512
BstSCI CCNGG 4 cut(s) 46, 874, 1123, 1124
BstSFI CTRYAG 1 cut(s) 762
BstV1I GCAGC 4 cut(s) 463, 579, 931, 943
BstV2I GAAGAC 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 441
BsuRI GGCC 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 654
BtsCI GGATG 4 cut(s) 427, 709, 805, 1005
BtsIMutI CAGTG 3 cut(s) 375, 980, 1065
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 4 cut(s) 44, 299, 303, 481
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 2 cut(s) 50, 120
Cfr9I CCCGGG 1 cut(s) 1124
ClaI ATCGAT 1 cut(s) 441
CseI GACGC 2 cut(s) 584, 716
Csp6I GTAC 2 cut(s) 885, 1103
CviAII CATG 4 cut(s) 43, 54, 509, 723
CviQI GTAC 2 cut(s) 885, 1103
DdeI CTNAG 3 cut(s) 129, 293, 354
DpnI GATC 3 cut(s) 84, 901, 1050
DpnII GATC 3 cut(s) 82, 899, 1048
DraIII CACNNNGTG 1 cut(s) 716
Eam1104I CTCTTC 3 cut(s) 231, 312, 615
EarI CTCTTC 3 cut(s) 231, 312, 615
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 53
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 305
EcoNI CCTNNNNNAGG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 4 cut(s) 46, 57, 512, 726
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 63
FatI CATG 4 cut(s) 42, 53, 508, 722
FauNDI CATATG 1 cut(s) 832
FbaI TGATCA 2 cut(s) 82, 1048
FblI GTMKAC 1 cut(s) 178
Fnu4HI GCNGC 4 cut(s) 477, 593, 920, 957
FokI GGATG 4 cut(s) 434, 716, 812, 1012
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 477, 593, 920, 957
FspBI CTAG 2 cut(s) 851, 1109
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 1 cut(s) 195
GluI GCNGC 4 cut(s) 477, 593, 920, 957
GsuI CTGGAG 2 cut(s) 192, 1004
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 47, 1125
HgaI GACGC 2 cut(s) 584, 716
HhaI GCGC 1 cut(s) 196
Hin1II CATG 4 cut(s) 46, 57, 512, 726
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HindIII AAGCTT 2 cut(s) 735, 753
HinfI GANTC 3 cut(s) 74, 134, 148
HpaII CCGG 2 cut(s) 47, 1125
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 3 cut(s) 107, 179, 805
Hpy188I TCNGA 3 cut(s) 82, 267, 824
Hpy188III TCNNGA 3 cut(s) 71, 356, 617
Hpy8I GTNNAC 3 cut(s) 107, 179, 805
HpyAV CCTTC 1 cut(s) 860
HpyCH4III ACNGT 2 cut(s) 278, 978
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 4 cut(s) 337, 536, 764, 919
HpyF10VI GCNNNNNNNGC 6 cut(s) 485, 553, 734, 761, 860, 925
HpyF3I CTNAG 3 cut(s) 129, 293, 354
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 4 cut(s) 46, 57, 512, 726
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 2 cut(s) 82, 1048
Kzo9I GATC 3 cut(s) 82, 899, 1048
LguI GCTCTTC 2 cut(s) 231, 312
LmnI GCTCC 3 cut(s) 211, 282, 953
Lsp1109I GCAGC 4 cut(s) 463, 579, 931, 943
LweI GCATC 1 cut(s) 635
MaeI CTAG 2 cut(s) 851, 1109
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 3 cut(s) 370, 978, 1081
MalI GATC 3 cut(s) 84, 901, 1050
MboI GATC 3 cut(s) 82, 899, 1048
MboII GAAGA 6 cut(s) 248, 299, 305, 440, 621, 632
MhlI GDGCHC 2 cut(s) 287, 307
MluCI AATT 3 cut(s) 99, 320, 1057
MmeI TCCRAC 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 1095
MseI TTAA 4 cut(s) 227, 468, 780, 786
MslI CAYNNNNRTG 1 cut(s) 513
MspCI CTTAAG 2 cut(s) 226, 779
MspI CCGG 2 cut(s) 47, 1125
MspR9I CCNGG 4 cut(s) 48, 876, 1125, 1126
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 6 cut(s) 485, 553, 734, 761, 860, 925
NciI CCSGG 3 cut(s) 48, 1125, 1126
NcoI CCATGG 1 cut(s) 53
NdeI CATATG 1 cut(s) 832
NdeII GATC 3 cut(s) 82, 899, 1048
NlaIII CATG 4 cut(s) 46, 57, 512, 726
NlaIV GGNNCC 3 cut(s) 51, 122, 366
NmuCI GTSAC 3 cut(s) 370, 978, 1081
NsbI TGCGCA 1 cut(s) 195
NspI RCATGY 2 cut(s) 46, 512
NspV TTCGAA 1 cut(s) 659
PaeI GCATGC 1 cut(s) 46
PasI CCCWGGG 1 cut(s) 875
PciI ACATGT 1 cut(s) 508
PciSI GCTCTTC 2 cut(s) 231, 312
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 3 cut(s) 74, 134, 148
PflFI GACNNNGTC 1 cut(s) 183
PkrI GCNGC 4 cut(s) 478, 594, 921, 958
PscI ACATGT 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 3 cut(s) 51, 122, 366
PspPI GGNCC 2 cut(s) 50, 120
PstI CTGCAG 1 cut(s) 766
PsyI GACNNNGTC 1 cut(s) 183
RsaI GTAC 2 cut(s) 886, 1104
RsaNI GTAC 2 cut(s) 885, 1103
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 1 cut(s) 307
SalI GTCGAC 1 cut(s) 177
SapI GCTCTTC 2 cut(s) 231, 312
SaqAI TTAA 4 cut(s) 227, 468, 780, 786
SatI GCNGC 4 cut(s) 477, 593, 920, 957
Sau3AI GATC 3 cut(s) 82, 899, 1048
Sau96I GGNCC 2 cut(s) 50, 120
ScrFI CCNGG 4 cut(s) 48, 876, 1125, 1126
SduI GDGCHC 2 cut(s) 287, 307
SfaNI GCATC 1 cut(s) 635
SfcI CTRYAG 1 cut(s) 762
SfuI TTCGAA 1 cut(s) 659
SinI GGWCC 1 cut(s) 50
SmaI CCCGGG 1 cut(s) 1126
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 4 cut(s) 226, 550, 615, 779
SmoI CTYRAG 4 cut(s) 226, 550, 615, 779
SphI GCATGC 1 cut(s) 46
Sse9I AATT 3 cut(s) 99, 320, 1057
SspMI CTAG 2 cut(s) 851, 1109
SstI GAGCTC 1 cut(s) 307
StyD4I CCNGG 4 cut(s) 46, 874, 1123, 1124
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 278, 978
TaiI ACGT 1 cut(s) 523
TaqI TCGA 3 cut(s) 178, 441, 659
TasI AATT 3 cut(s) 99, 320, 1057
TatI WGTACW 2 cut(s) 884, 1102
TfiI GAWTC 3 cut(s) 74, 134, 148
Tru1I TTAA 4 cut(s) 227, 468, 780, 786
Tru9I TTAA 4 cut(s) 227, 468, 780, 786
TscAI CASTG 3 cut(s) 375, 987, 1072
TseFI GTSAC 3 cut(s) 370, 978, 1081
TseI GCWGC 4 cut(s) 476, 592, 919, 956
Tsp45I GTSAC 3 cut(s) 370, 978, 1081
TspDTI ATGAA 6 cut(s) 441, 531, 756, 819, 927, 1137
TspMI CCCGGG 1 cut(s) 1124
TspRI CASTG 3 cut(s) 375, 987, 1072
Tth111I GACNNNGTC 1 cut(s) 183
Vha464I CTTAAG 2 cut(s) 226, 779
VpaK11BI GGWCC 1 cut(s) 50
XagI CCTNNNNNAGG 1 cut(s) 128
XapI RAATTY 1 cut(s) 1057
XceI RCATGY 2 cut(s) 46, 512
XmaI CCCGGG 1 cut(s) 1124
XmiI GTMKAC 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 2 cut(s) 851, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.