Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000238.1

Orthogroup ID

OG0006140

Physical Location & Seq

Genomic Coordinates Reverse (-)

9503 .. 12390

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000238.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

atgccgggaccatgggctgatgattttcgtgaatcatctgatcattatacaacgaaaattggtggactacctgattggccccttactgaggaatctgtgccaccgaatctgcttcaatgtagtgcttgtggaagtaaactatgtcttgtagcgcaggtttatgctccagtttcaagtgaaaacttaagagttgaagagcgtgttctttttgtttttggttgtctgatggcaaactgtgggagcactcctcttagctggcgagctcttcgtcttcaaaaattagacgatgcggagaaatcaaataccacttctcaggaagtggtgccagtgacttcaccatttgtatcagtttcaaacaaaagctggtgggaggatttggatgatgaagatgcagatatcgatttggaggagttgggtaaagcacttaatagtgctgcgagtttcgcttctcataccaagaaaccacatgtgaatgaacgtagtaagcctgttgcaaaaccattgccttcaagtcagttggaaaaagtggcagacgctaatacacctgtgctgccttgtttttatttatacactcaagaagaggcatcttcaaaggacaaccttacttctatgtgttcgaactactcatcgctttccatcaaaaataactcaaatgatgaggatgatgcacaaagtgaaacatgggcagaggaagcttatgaatatgataaagctttgactgcagacaggacataccttaagtttaagaaacgattggatgtgaacccagaacaatgtttcagatattcatatggtggaaatccactcctagctacacaagctgaaggcgaccctgggagatgtacattgtgtggtggatcaaggcattatgaaatgcagctaatgcctccactattatattttctacaaggagctgctgatgattgccaaagacagtcactggagaactggaactggatgacacttatggtatatacttgttcccagagctgttctcaacattttgatcaaggaaattcaaacattgggaagtggcttgtgacagaggaagctattcttgtacaactagagaaatcctttcccggggtagccgaacatagctattcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD2_C

Protein Analysis

370

Amino Acids

41.31

Weight (kDa)

4.64

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64830 AT5G64830 AT5G64830
fragaria_vesca	FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740 FvH4_1g22740
malus_domestica	MD15G1331600.v1.1
prunus_persica	Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1 Prupe.6G171600_v2.0.a1
pyrus_communis	pycom15g29340
rosa_chinensis	RchiOBHm_Chr2g0117041
rosa_laevigata	RLG00000018321
rosa_multiflora	Rmu_ssc0000238.1_g000003
rosa_roxburghii	Rroxscaffold_2G00126800
rosa_rugosa	Rorug02G0209700
rosa_samantha	Rh2AG265600 Rh2BG277400 Rh2DG272900 Rh2DG291900
rosa_wichuraiana	Rw0G019120 Rw2G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	865
AcsI	RAATTY	1 cut(s)	1015
AcuI	CTGAAG	1 cut(s)	843
AdeI	CACNNNGTG	1 cut(s)	674
AfaI	GTAC	2 cut(s)	844, 1062
AfiI	CCNNNNNNNGG	2 cut(s)	88, 1083
AflII	CTTAAG	2 cut(s)	184, 737
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	8 cut(s)	116, 174, 194, 275, 354, 510, 591, 1020
AjnI	CCWGG	1 cut(s)	832
Alw21I	GWGCWC	2 cut(s)	245, 265
AlwI	GGATC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	940
Ama87I	CYCGRG	1 cut(s)	1082
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	434, 550, 877, 914
ApoI	RAATTY	1 cut(s)	1015
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	8, 78
AsuC2I	CCSGG	3 cut(s)	6, 1083, 1084
AsuHPI	GGTGA	1 cut(s)	327
AsuII	TTCGAA	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	1082
AvaII	GGWCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	245, 265
BbvI	GCAGC	4 cut(s)	421, 537, 889, 901
BccI	CCATC	2 cut(s)	220, 644
BciT130I	CCWGG	1 cut(s)	834
BclI	TGATCA	2 cut(s)	40, 1006
BcnI	CCSGG	3 cut(s)	6, 1083, 1084
BfaI	CTAG	2 cut(s)	809, 1067
BfmI	CTRYAG	1 cut(s)	720
BfrI	CTTAAG	2 cut(s)	184, 737
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	435, 551, 878, 915
BlsI	GCNGC	4 cut(s)	436, 552, 879, 916
Bme1390I	CCNGG	4 cut(s)	6, 834, 1083, 1084
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	1082
BmgT120I	GGNCC	2 cut(s)	8, 78
BmiI	GGNNCC	3 cut(s)	9, 80, 324
BmrFI	CCNGG	4 cut(s)	6, 834, 1083, 1084
BmsI	GCATC	4 cut(s)	277, 379, 593, 655
BpiI	GAAGAC	1 cut(s)	263
BplI	GAGNNNNNCTC	4 cut(s)	232, 264, 979, 1011
BpmI	CTGGAG	2 cut(s)	150, 962
Bpu14I	TTCGAA	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	558
BpuMI	CCSGG	3 cut(s)	6, 1083, 1084
Bsa29I	ATCGAT	1 cut(s)	399
BsaJI	CCNNGG	5 cut(s)	11, 832, 833, 1082, 1083
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 1083
Bse1I	ACTGG	5 cut(s)	167, 326, 945, 953, 959
Bse3DI	GCAATG	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	834
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	5 cut(s)	11, 832, 833, 1082, 1083
BseGI	GGATG	4 cut(s)	385, 667, 763, 963
BseLI	CCNNNNNNNGG	2 cut(s)	88, 1083
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	78, 326
BseNI	ACTGG	5 cut(s)	167, 326, 945, 953, 959
BseRI	GAGGAG	2 cut(s)	237, 422
BseXI	GCAGC	4 cut(s)	421, 537, 889, 901
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	245, 265
BsiHKCI	CYCGRG	1 cut(s)	1082
BsiSI	CCGG	2 cut(s)	5, 1083
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	88, 1083
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	1082
Bsp119I	TTCGAA	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	245, 265
Bsp1407I	TGTACA	2 cut(s)	842, 1060
Bsp143I	GATC	3 cut(s)	40, 857, 1006
Bsp19I	CCATGG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	79, 325
BspDI	ATCGAT	1 cut(s)	399
BspLI	GGNNCC	3 cut(s)	9, 80, 324
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	865
BspQI	GCTCTTC	2 cut(s)	189, 270
BspT104I	TTCGAA	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	322
BspTI	CTTAAG	2 cut(s)	184, 737
BsrDI	GCAATG	1 cut(s)	500
BsrGI	TGTACA	2 cut(s)	842, 1060
BsrI	ACTGG	5 cut(s)	167, 326, 945, 953, 959
BssECI	CCNNGG	5 cut(s)	11, 832, 833, 1082, 1083
BssMI	GATC	3 cut(s)	40, 857, 1006
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	2 cut(s)	236, 936
Bst6I	CTCTTC	3 cut(s)	189, 270, 573
BstAFI	CTTAAG	2 cut(s)	184, 737
BstAPI	GCANNNNNTGC	1 cut(s)	883
BstAUI	TGTACA	2 cut(s)	842, 1060
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	257, 261
BstDEI	CTNAG	3 cut(s)	87, 251, 312
BstDSI	CCRYGG	1 cut(s)	11
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	4 cut(s)	385, 667, 763, 963
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	3 cut(s)	43, 860, 1009
BstMBI	GATC	3 cut(s)	40, 857, 1006
BstMWI	GCNNNNNNNGC	5 cut(s)	443, 692, 719, 818, 883
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	4, 832, 1081, 1082
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	421, 537, 889, 901
BstV2I	GAAGAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	4 cut(s)	385, 667, 763, 963
BtsIMutI	CAGTG	2 cut(s)	333, 938
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	257, 261
CaiI	CAGNNNCTG	1 cut(s)	940
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	8, 78
Cfr9I	CCCGGG	1 cut(s)	1082
ClaI	ATCGAT	1 cut(s)	399
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	843, 1061
CviAII	CATG	3 cut(s)	12, 467, 681
CviQI	GTAC	2 cut(s)	843, 1061
DdeI	CTNAG	3 cut(s)	87, 251, 312
DpnI	GATC	3 cut(s)	42, 859, 1008
DpnII	GATC	3 cut(s)	40, 857, 1006
DraIII	CACNNNGTG	1 cut(s)	674
Eam1104I	CTCTTC	3 cut(s)	189, 270, 573
EarI	CTCTTC	3 cut(s)	189, 270, 573
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	1082
EcoICRI	GAGCTC	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	832
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	3 cut(s)	15, 470, 684
FalI	AAGNNNNNCTT	2 cut(s)	1041, 1073
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	11, 466, 680
FauNDI	CATATG	1 cut(s)	790
FbaI	TGATCA	2 cut(s)	40, 1006
Fnu4HI	GCNGC	4 cut(s)	435, 551, 878, 915
FokI	GGATG	4 cut(s)	392, 674, 770, 970
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	4 cut(s)	435, 551, 878, 915
FspBI	CTAG	2 cut(s)	809, 1067
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	435, 551, 878, 915
GsuI	CTGGAG	2 cut(s)	150, 962
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	2 cut(s)	5, 1083
HgaI	GACGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	3 cut(s)	15, 470, 684
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	2 cut(s)	693, 711
HinfI	GANTC	3 cut(s)	32, 92, 106
HpaII	CCGG	2 cut(s)	5, 1083
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	65, 137, 763
Hpy188I	TCNGA	3 cut(s)	40, 225, 782
Hpy188III	TCNNGA	3 cut(s)	29, 314, 575
Hpy8I	GTNNAC	3 cut(s)	65, 137, 763
HpyAV	CCTTC	2 cut(s)	516, 818
HpyCH4III	ACNGT	2 cut(s)	236, 936
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	5 cut(s)	392, 494, 668, 722, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	443, 692, 719, 818, 883
HpyF3I	CTNAG	3 cut(s)	87, 251, 312
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	3 cut(s)	15, 470, 684
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	2 cut(s)	40, 1006
Kzo9I	GATC	3 cut(s)	40, 857, 1006
LguI	GCTCTTC	2 cut(s)	189, 270
LmnI	GCTCC	3 cut(s)	169, 240, 911
Lsp1109I	GCAGC	4 cut(s)	421, 537, 889, 901
LweI	GCATC	4 cut(s)	277, 379, 593, 655
MaeI	CTAG	2 cut(s)	809, 1067
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	3 cut(s)	328, 936, 1039
MalI	GATC	3 cut(s)	42, 859, 1008
MboI	GATC	3 cut(s)	40, 857, 1006
MboII	GAAGA	6 cut(s)	206, 257, 263, 398, 579, 590
MhlI	GDGCHC	2 cut(s)	245, 265
MluCI	AATT	3 cut(s)	57, 278, 1015
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	9 cut(s)	82, 258, 364, 400, 574, 652, 682, 897, 1039
MroXI	GAANNNNTTC	1 cut(s)	1053
MseI	TTAA	4 cut(s)	185, 426, 738, 744
MslI	CAYNNNNRTG	1 cut(s)	471
MspCI	CTTAAG	2 cut(s)	184, 737
MspI	CCGG	2 cut(s)	5, 1083
MspR9I	CCNGG	4 cut(s)	6, 834, 1083, 1084
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	5 cut(s)	443, 692, 719, 818, 883
NciI	CCSGG	3 cut(s)	6, 1083, 1084
NcoI	CCATGG	1 cut(s)	11
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	3 cut(s)	40, 857, 1006
NlaIII	CATG	3 cut(s)	15, 470, 684
NlaIV	GGNNCC	3 cut(s)	9, 80, 324
NmuCI	GTSAC	3 cut(s)	328, 936, 1039
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	617
PasI	CCCWGGG	1 cut(s)	833
PciI	ACATGT	1 cut(s)	466
PciSI	GCTCTTC	2 cut(s)	189, 270
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	3 cut(s)	32, 92, 106
PkrI	GCNGC	4 cut(s)	436, 552, 879, 916
PscI	ACATGT	1 cut(s)	466
Psp124BI	GAGCTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	832
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	3 cut(s)	9, 80, 324
PspPI	GGNCC	2 cut(s)	8, 78
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	940
RsaI	GTAC	2 cut(s)	844, 1062
RsaNI	GTAC	2 cut(s)	843, 1061
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	265
SapI	GCTCTTC	2 cut(s)	189, 270
SaqAI	TTAA	4 cut(s)	185, 426, 738, 744
SatI	GCNGC	4 cut(s)	435, 551, 878, 915
Sau3AI	GATC	3 cut(s)	40, 857, 1006
Sau96I	GGNCC	2 cut(s)	8, 78
ScrFI	CCNGG	4 cut(s)	6, 834, 1083, 1084
SduI	GDGCHC	2 cut(s)	245, 265
SfaNI	GCATC	4 cut(s)	277, 379, 593, 655
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	617
SinI	GGWCC	1 cut(s)	8
SmaI	CCCGGG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	3 cut(s)	184, 573, 737
SmoI	CTYRAG	3 cut(s)	184, 573, 737
Sse9I	AATT	3 cut(s)	57, 278, 1015
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	809, 1067
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	4 cut(s)	4, 832, 1081, 1082
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	236, 936
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	399, 617
TasI	AATT	3 cut(s)	57, 278, 1015
TatI	WGTACW	2 cut(s)	842, 1060
TfiI	GAWTC	3 cut(s)	32, 92, 106
Tru1I	TTAA	4 cut(s)	185, 426, 738, 744
Tru9I	TTAA	4 cut(s)	185, 426, 738, 744
TscAI	CASTG	2 cut(s)	333, 945
TseFI	GTSAC	3 cut(s)	328, 936, 1039
TseI	GCWGC	4 cut(s)	434, 550, 877, 914
Tsp45I	GTSAC	3 cut(s)	328, 936, 1039
TspDTI	ATGAA	6 cut(s)	399, 489, 714, 777, 885, 1095
TspMI	CCCGGG	1 cut(s)	1082
TspRI	CASTG	2 cut(s)	333, 945
Vha464I	CTTAAG	2 cut(s)	184, 737
VpaK11BI	GGWCC	1 cut(s)	8
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	1015
XceI	RCATGY	1 cut(s)	470
XmaI	CCCGGG	1 cut(s)	1082
XmnI	GAANNNNTTC	1 cut(s)	1053
XspI	CTAG	2 cut(s)	809, 1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.