AT5G66180
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26448938 .. 26451154
2217 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66180.1

Sequence Viewer

Length: 1188 bp
ATGGAAGAAACGTCCAAGCTACAGTTACCGGAGAGTTTCCTTAGCTTTCTAGAGGCGAATGGCCTTGATCCTTCAATCTATACTCACGGAGATTCAATTCCACGTTATGTAAGGTTGAAACCTGGATTCGAGGATGCTTTCGAAGAGATTGAATCCGAAATTAACTGTAAACTGGAGAAGGTGAATTGGTTACCAGGATTTTACTCCATCCCTCCAGATGTTCATATAGCCAGAACCAAGGCCTATCAGCAAGGCATGATGTACGGAATCGATGCAGCTTCCGGTGCCGCTGTCTCAGCTCTTGGTATCTCCCCAGGAGACCATGTCTTGGATCTTTGTGCTGCTCCTGGTGCTAAACTATGTATGATGCTTGACCTACTGGGTCAGAAGGGTACTGCCACCGGTGTCGATGTTGCAAGGCATCGTCTTGCTGCCTGCAGAACTATGCTTCTAAAGTATGGGCTTGCTGAAAGGAGCCGGCTTTTTCTTGCTGATGGAACCACTTTCTCAGTCCCACCAACCAGAAACCTACCATGTGAGTCATGTGTGGACGATCATGAAGACACATTCAAGCAGTGGACCTCCCGTAGACCTTACAAAGAAAGGAAACAAGAAGCTAAGGCAAGGAAGAATTCTGTTTTGCCGCAGAATGGACAGGCAGAAATTATTTTCTACGGACAGGGTTCTGGAGTAATCGGGCTAAAAAAGAATGAACTTTATAGATCCCTTGACCAAAATGATTATGCATCTTATGGGTATGATAAGGTTCTTGTGGACGCAGAGTGCACACACGATGGTTCGATCAAACATATCCAGAAATTTGAGCAATGGGGTTGGAAAACTCTGGAACGCCGTGTTCTGGATGCTGAGAGAACCGATACAAACTTAAAAGCTCTTCAGTTGAATCTACTGAGAAATGGATTCAGATTGTTGAAAGAAGCTGGCACTCTAGTGTACAGCACCTGCAGTTTGACGCATGCCCAAAACGAAGATGTGGTGGATCAGTTCCTTTCTGAAAATTTCTCTGCAGAGCTACAAGAGATTGAAATGGCCAAGGATTGGCCGTGTAGAAGTGGTCGCACGCCTAAGACACTGCGGTTTGATCCTTCCACCTCAGCAACCAGCGGCCTTTTCGTTGCAAAAATCAGGAAATTGCCACCCAACGAAGCAAAGAAGAATGTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

395

Amino Acids

44.21

Weight (kDa)

6.48

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 100 - 168 1.8e-07 16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F PF01189 251 - 382 9.7e-18 16S rRNA methyltransferase RsmB/F
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 971
Acc36I ACCTGC 1 cut(s) 971
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 2 cut(s) 328, 1059
AccI GTMKAC 1 cut(s) 589
AciI CCGC 4 cut(s) 288, 644, 1096, 1125
AclWI GGATC 5 cut(s) 62, 339, 717, 1008, 1097
AcoI YGGCCR 2 cut(s) 1050, 1061
AcsI RAATTY 3 cut(s) 631, 818, 1018
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 3 cut(s) 263, 394, 956
AfiI CCNNNNNNNGG 4 cut(s) 328, 650, 859, 1059
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 8 cut(s) 75, 96, 118, 152, 571, 904, 934, 1046
AjnI CCWGG 4 cut(s) 121, 193, 313, 346
AleI CACNNNNGTG 1 cut(s) 950
AluBI AGCT 8 cut(s) 19, 45, 278, 299, 617, 893, 941, 1033
AluI AGCT 8 cut(s) 19, 45, 278, 299, 617, 893, 941, 1033
Alw21I GWGCWC 1 cut(s) 788
Alw26I GTCTC 2 cut(s) 298, 312
Alw44I GTGCAC 1 cut(s) 784
AlwI GGATC 5 cut(s) 62, 339, 717, 1008, 1097
AlwNI CAGNNNCTG 1 cut(s) 963
AoxI GGCC 5 cut(s) 61, 240, 1050, 1061, 1126
ApaLI GTGCAC 1 cut(s) 784
ApeKI GCWGC 3 cut(s) 275, 341, 431
ApoI RAATTY 3 cut(s) 631, 818, 1018
AsiGI ACCGGT 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 579
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 1 cut(s) 141
AvaII GGWCC 1 cut(s) 579
BaeGI GKGCMC 1 cut(s) 788
BalI TGGCCA 1 cut(s) 1052
BanI GGYRCC 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 567
Bbv12I GWGCWC 1 cut(s) 788
BbvCI CCTCAGC 1 cut(s) 1114
BbvI GCAGC 3 cut(s) 287, 328, 418
BccI CCATC 3 cut(s) 215, 488, 788
BceAI ACGGC 2 cut(s) 837, 1048
BciT130I CCWGG 4 cut(s) 123, 195, 315, 348
BcoDI GTCTC 2 cut(s) 298, 312
BfaI CTAG 2 cut(s) 50, 950
BfmI CTRYAG 4 cut(s) 20, 436, 964, 1026
BfuAI ACCTGC 1 cut(s) 971
BisI GCNGC 6 cut(s) 276, 288, 342, 432, 644, 1126
BlsI GCNGC 6 cut(s) 277, 289, 343, 433, 645, 1127
Bme1390I CCNGG 4 cut(s) 123, 195, 315, 348
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 3 cut(s) 286, 476, 499
BmrFI CCNGG 4 cut(s) 123, 195, 315, 348
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 6 cut(s) 124, 262, 357, 430, 755, 853
BmuI ACTGGG 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 3 cut(s) 194, 198, 708
Bpu10I CCTNAGC 3 cut(s) 41, 618, 1114
Bpu14I TTCGAA 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 312
BsaJI CCNNGG 3 cut(s) 237, 313, 1053
BsaWI WCCGGW 3 cut(s) 28, 281, 401
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 4 cut(s) 328, 650, 859, 1059
Bse118I RCCGGY 2 cut(s) 401, 477
Bse1I ACTGG 2 cut(s) 177, 384
Bse3DI GCAATG 1 cut(s) 833
BseBI CCWGG 4 cut(s) 123, 195, 315, 348
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 237, 313, 1053
BseGI GGATG 3 cut(s) 139, 207, 868
BseLI CCNNNNNNNGG 4 cut(s) 328, 650, 859, 1059
BseMI GCAATG 1 cut(s) 833
BseMII CTCAG 5 cut(s) 309, 522, 858, 902, 1128
BseNI ACTGG 2 cut(s) 177, 384
BseSI GKGCMC 1 cut(s) 788
BseXI GCAGC 3 cut(s) 287, 328, 418
BshFI GGCC 5 cut(s) 63, 242, 1052, 1063, 1128
BshNI GGYRCC 1 cut(s) 284
BshTI ACCGGT 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 788
BsiSI CCGG 4 cut(s) 29, 282, 402, 478
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 4 cut(s) 328, 650, 859, 1059
BsmAI GTCTC 2 cut(s) 298, 312
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 5 cut(s) 63, 242, 1052, 1063, 1128
Bso31I GGTCTC 1 cut(s) 312
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 788
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
BspACI CCGC 4 cut(s) 288, 644, 1096, 1125
BspANI GGCC 5 cut(s) 63, 242, 1052, 1063, 1128
BspCNI CTCAG 5 cut(s) 308, 521, 859, 903, 1127
BspDI ATCGAT 1 cut(s) 270
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 3 cut(s) 286, 476, 499
BspMAI CTGCAG 3 cut(s) 440, 968, 1030
BspMI ACCTGC 1 cut(s) 971
BspPI GGATC 5 cut(s) 62, 339, 717, 1008, 1097
BspQI GCTCTTC 1 cut(s) 900
BspT104I TTCGAA 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 312
BsrDI GCAATG 1 cut(s) 833
BsrFI RCCGGY 2 cut(s) 401, 477
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 2 cut(s) 177, 384
BssAI RCCGGY 2 cut(s) 401, 477
BssECI CCNNGG 3 cut(s) 237, 313, 1053
BssMI GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
BssT1I CCWWGG 2 cut(s) 237, 1053
Bst2UI CCWGG 4 cut(s) 123, 195, 315, 348
Bst4CI ACNGT 2 cut(s) 24, 167
Bst6I CTCTTC 2 cut(s) 138, 900
BstAUI TGTACA 1 cut(s) 954
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 6 cut(s) 436, 465, 479, 943, 978, 1082
BstDEI CTNAG 8 cut(s) 41, 295, 508, 618, 867, 911, 1086, 1114
BstEII GGTNACC 1 cut(s) 189
BstF5I GGATG 3 cut(s) 139, 207, 868
BstKTI GATC 7 cut(s) 70, 334, 556, 725, 804, 1003, 1105
BstMAI GTCTC 2 cut(s) 298, 312
BstMBI GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
BstMWI GCNNNNNNNGC 3 cut(s) 284, 296, 350
BstNI CCWGG 4 cut(s) 123, 195, 315, 348
BstNSI RCATGY 1 cut(s) 980
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 4 cut(s) 121, 193, 313, 346
BstSFI CTRYAG 4 cut(s) 20, 436, 964, 1026
BstSLI GKGCMC 1 cut(s) 788
BstV1I GCAGC 3 cut(s) 287, 328, 418
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 331, 722
BstYI RGATCY 2 cut(s) 331, 722
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 5 cut(s) 63, 242, 1052, 1063, 1128
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 3 cut(s) 139, 207, 868
BtsI GCAGTG 2 cut(s) 581, 1091
BtsIMutI CAGTG 2 cut(s) 581, 1091
BveI ACCTGC 1 cut(s) 971
Cac8I GCNNGC 6 cut(s) 436, 465, 479, 943, 978, 1082
CaiI CAGNNNCTG 1 cut(s) 963
CciI TCATGA 1 cut(s) 556
Cfr10I RCCGGY 2 cut(s) 401, 477
Cfr13I GGNCC 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 270
CseI GACGC 2 cut(s) 785, 982
Csp6I GTAC 3 cut(s) 262, 393, 955
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 6 cut(s) 256, 323, 534, 543, 557, 977
CviQI GTAC 3 cut(s) 262, 393, 955
DdeI CTNAG 8 cut(s) 41, 295, 508, 618, 867, 911, 1086, 1114
DpnI GATC 7 cut(s) 69, 333, 555, 724, 803, 1002, 1104
DpnII GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
EaeI YGGCCR 2 cut(s) 1050, 1061
Eam1104I CTCTTC 2 cut(s) 138, 900
EarI CTCTTC 2 cut(s) 138, 900
Eco130I CCWWGG 2 cut(s) 237, 1053
Eco147I AGGCCT 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 881
Eco91I GGTNACC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 4 cut(s) 121, 193, 313, 346
EcoT14I CCWWGG 2 cut(s) 237, 1053
EcoT22I ATGCAT 1 cut(s) 748
ErhI CCWWGG 2 cut(s) 237, 1053
FaeI CATG 6 cut(s) 259, 326, 537, 546, 560, 980
FaqI GGGAC 1 cut(s) 497
FatI CATG 6 cut(s) 255, 322, 533, 542, 556, 976
FblI GTMKAC 1 cut(s) 589
Fnu4HI GCNGC 6 cut(s) 276, 288, 342, 432, 644, 1126
FokI GGATG 3 cut(s) 146, 194, 875
Fsp4HI GCNGC 6 cut(s) 276, 288, 342, 432, 644, 1126
FspBI CTAG 2 cut(s) 50, 950
GluI GCNGC 6 cut(s) 276, 288, 342, 432, 644, 1126
GsuI CTGGAG 3 cut(s) 194, 198, 708
HaeIII GGCC 5 cut(s) 63, 242, 1052, 1063, 1128
HapII CCGG 4 cut(s) 29, 282, 402, 478
HgaI GACGC 2 cut(s) 785, 982
Hin1II CATG 6 cut(s) 259, 326, 537, 546, 560, 980
HinfI GANTC 7 cut(s) 92, 126, 152, 267, 539, 904, 921
HpaII CCGG 4 cut(s) 29, 282, 402, 478
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 7 cut(s) 170, 550, 579, 590, 775, 786, 955
Hpy188I TCNGA 4 cut(s) 157, 387, 926, 1015
Hpy188III TCNNGA 8 cut(s) 50, 215, 557, 687, 814, 845, 860, 1147
Hpy8I GTNNAC 7 cut(s) 170, 550, 579, 590, 775, 786, 955
HpyAV CCTTC 4 cut(s) 81, 172, 382, 1116
HpyCH4III ACNGT 2 cut(s) 24, 167
HpyCH4IV ACGT 2 cut(s) 11, 103
HpyCH4V TGCA 8 cut(s) 275, 416, 438, 746, 786, 966, 1028, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 296, 350
HpyF3I CTNAG 8 cut(s) 41, 295, 508, 618, 867, 911, 1086, 1114
HpySE526I ACGT 2 cut(s) 11, 103
Hsp92II CATG 6 cut(s) 259, 326, 537, 546, 560, 980
KroI GCCGGC 1 cut(s) 477
KroNI GCCGGC 1 cut(s) 479
Kzo9I GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
LguI GCTCTTC 1 cut(s) 900
LmnI GCTCC 2 cut(s) 349, 474
Lsp1109I GCAGC 3 cut(s) 287, 328, 418
LweI GCATC 6 cut(s) 124, 262, 357, 430, 755, 853
MaeI CTAG 2 cut(s) 50, 950
MaeII ACGT 2 cut(s) 11, 103
MaeIII GTNAC 2 cut(s) 24, 189
MalI GATC 7 cut(s) 69, 333, 555, 724, 803, 1002, 1104
MboI GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
MboII GAAGA 7 cut(s) 17, 155, 572, 640, 887, 1001, 1186
MflI RGATCY 2 cut(s) 331, 722
MhlI GDGCHC 1 cut(s) 788
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 8 cut(s) 96, 159, 184, 631, 663, 818, 1018, 1151
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 1 cut(s) 548
MmeI TCCRAC 1 cut(s) 815
MnlI CCTC 5 cut(s) 46, 124, 222, 592, 1123
Mox20I TGGCCA 1 cut(s) 1052
Mph1103I ATGCAT 1 cut(s) 748
MroNI GCCGGC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 2 cut(s) 162, 887
MslI CAYNNNNRTG 1 cut(s) 950
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 2 cut(s) 290, 1125
MspI CCGG 4 cut(s) 29, 282, 402, 478
MspR9I CCNGG 4 cut(s) 123, 195, 315, 348
MvaI CCWGG 4 cut(s) 123, 195, 315, 348
MwoI GCNNNNNNNGC 3 cut(s) 284, 296, 350
NaeI GCCGGC 1 cut(s) 479
NdeII GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
NgoMIV GCCGGC 1 cut(s) 477
NlaIII CATG 6 cut(s) 259, 326, 537, 546, 560, 980
NlaIV GGNNCC 3 cut(s) 286, 476, 499
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 980
NspV TTCGAA 1 cut(s) 141
OliI CACNNNNGTG 1 cut(s) 950
PaeI GCATGC 1 cut(s) 980
PagI TCATGA 1 cut(s) 556
PaqCI CACCTGC 1 cut(s) 971
PceI AGGCCT 1 cut(s) 242
PciSI GCTCTTC 1 cut(s) 900
PdiI GCCGGC 1 cut(s) 479
PfeI GAWTC 6 cut(s) 92, 126, 152, 267, 904, 921
PflFI GACNNNGTC 1 cut(s) 323
PflMI CCANNNNNTGG 2 cut(s) 328, 1059
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 6 cut(s) 277, 289, 343, 433, 645, 1127
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Psp6I CCWGG 4 cut(s) 121, 193, 313, 346
PspEI GGTNACC 1 cut(s) 189
PspGI CCWGG 4 cut(s) 121, 193, 313, 346
PspN4I GGNNCC 3 cut(s) 286, 476, 499
PspPI GGNCC 1 cut(s) 579
PstI CTGCAG 3 cut(s) 440, 968, 1030
PstNI CAGNNNCTG 1 cut(s) 963
PsuI RGATCY 2 cut(s) 331, 722
PsyI GACNNNGTC 1 cut(s) 323
RsaI GTAC 3 cut(s) 263, 394, 956
RsaNI GTAC 3 cut(s) 262, 393, 955
RseI CAYNNNNRTG 1 cut(s) 950
SapI GCTCTTC 1 cut(s) 900
SaqAI TTAA 2 cut(s) 162, 887
SatI GCNGC 6 cut(s) 276, 288, 342, 432, 644, 1126
Sau3AI GATC 7 cut(s) 67, 331, 553, 722, 801, 1000, 1102
Sau96I GGNCC 1 cut(s) 579
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 4 cut(s) 123, 195, 315, 348
SduI GDGCHC 1 cut(s) 788
SfaNI GCATC 6 cut(s) 124, 262, 357, 430, 755, 853
SfcI CTRYAG 4 cut(s) 20, 436, 964, 1026
SfuI TTCGAA 1 cut(s) 141
SgrAI CRCCGGYG 1 cut(s) 401
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 950
SphI GCATGC 1 cut(s) 980
Sse9I AATT 8 cut(s) 96, 159, 184, 631, 663, 818, 1018, 1151
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 4 cut(s) 288, 644, 1096, 1125
SspMI CTAG 2 cut(s) 50, 950
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 4 cut(s) 121, 193, 313, 346
StyI CCWWGG 2 cut(s) 237, 1053
TaaI ACNGT 2 cut(s) 24, 167
TaiI ACGT 2 cut(s) 14, 106
TaqI TCGA 5 cut(s) 129, 141, 270, 408, 800
TasI AATT 8 cut(s) 96, 159, 184, 631, 663, 818, 1018, 1151
TatI WGTACW 1 cut(s) 954
TauI GCSGC 3 cut(s) 290, 646, 1128
TfiI GAWTC 6 cut(s) 92, 126, 152, 267, 904, 921
Tru1I TTAA 2 cut(s) 162, 887
Tru9I TTAA 2 cut(s) 162, 887
TscAI CASTG 2 cut(s) 581, 1098
TseI GCWGC 3 cut(s) 275, 341, 431
TspDTI ATGAA 3 cut(s) 212, 573, 726
TspGWI ACGGA 3 cut(s) 102, 279, 690
TspRI CASTG 2 cut(s) 581, 1098
Tth111I GACNNNGTC 1 cut(s) 323
Van91I CCANNNNNTGG 2 cut(s) 328, 1059
VneI GTGCAC 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 3 cut(s) 631, 818, 1018
XbaI TCTAGA 1 cut(s) 49
XceI RCATGY 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 589
XspI CTAG 2 cut(s) 50, 950
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.