MD02G1129700.v1.1
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
10472720 .. 10475850
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1129700.v1.1.491

Sequence Viewer

Length: 1185 bp
ATGGAAGAAGAAGAAGAAGCAGCTTCGAAGCCGGCGCTGCCGGACGCCTTCCTCGATTTTCTGAAGGAGAACGGGTTGGACCCTTCGATTTATTCGGAGAGCCAATCGACCCCACGTTACATAAGGCTGAAGCCCGGATTCGAAGATCGAATCGAAGAGATTGAAGCTGAGATCAAGTGCAAGCTTGAAGAAGTGGAATGGTTGCCTGGATTTTATGCTCTTCCGCCGGATGTTCAGATTGCTAACTCAAATGCATACCGGGAGGGGAAGATATATGGAATTGACGCGGCGTCTGGTGCTGCTGTTTCAGCATTGAGTATCTCAGCTGGAGATCATGTTCTTGACCTTTGTGCTGCTCCTGGTGCTAAGCTTTGTATGATATCAGACCTTCTTGGCAATTCGGGTTCTGTAACTGGTGTTGATGTTTCAAGCCATCGTTTAGCAGCCTGTAGGACAATGTTACAGAAATATGCATTGGGCAATCGCTGCCGACTATTTGTTGCTGATGGGACAACTTTTTCCCTCGTACCCACGAGAGTTCTTTCAGATCCAAAATCATGTGAATCTACTTGGGAAGAAAATGTGACATTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAAGAAGCAGCTAGGGTAAGAAAAAATGGTGCCGTTCGGTCAGGGAATCAACTTCCAGAGCTCATTTATTATGGCCGCCACTCTGGTGTGGCTGGACTGACTAAAAGTGAATTGTACCAAACTTTTCGTGACAGCGAATATTTGAGCTGCGGCTATGACAAGGTACTAGTGGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAGAAATTCGAACAGTGGGGATGGGAAACTCTTCAACGTCGTGTACTGGATGCAGAAAGAAGTGATAGCCTCACCGTGCTTCAGTTGAAGCTCCTAACCAATGGTTTTCGATTGCTAAAATCTGGGGGGATTCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAATGAAGACGTGGTAAAGCAGTTTCTTGAGGGAAATCCTTGTGCGGAGTTGCAGGTGATAGATGCTGCTGAAAATTGGCCGTGCAAGAACGGGCGAGTACCAGATACCCTGCGCTTTGATCCCGTGACTTCAAAAACGAGCGGACTGTTTGTCGCAAAGTTCTCGAAATTGACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

395

Amino Acids

43.71

Weight (kDa)

5.42

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 104 - 178 1.8e-09 16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F PF01189 259 - 389 4.3e-18 16S rRNA methyltransferase RsmB/F
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
Acc36I ACCTGC 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 656
AccBSI CCGCTC 1 cut(s) 1146
AccII CGCG 1 cut(s) 287
AciI CCGC 6 cut(s) 224, 287, 703, 777, 1049, 1146
AclWI GGATC 3 cut(s) 542, 829, 1118
AcoI YGGCCR 2 cut(s) 700, 1082
AcsI RAATTY 1 cut(s) 842
AcuI CTGAAG 3 cut(s) 83, 149, 902
AcyI GRCGYC 2 cut(s) 45, 290
AfaI GTAC 5 cut(s) 528, 743, 792, 882, 1104
AflIII ACRYGT 1 cut(s) 832
AgsI TTSAA 7 cut(s) 164, 188, 429, 592, 872, 925, 1137
AhdI GACNNNNNGTC 2 cut(s) 289, 1154
AhlI ACTAGT 1 cut(s) 793
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 2 cut(s) 205, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AleI CACNNNNGTG 1 cut(s) 711
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 9 cut(s) 23, 167, 184, 326, 370, 638, 688, 774, 928
AluI AGCT 9 cut(s) 23, 167, 184, 326, 370, 638, 688, 774, 928
Alw21I GWGCWC 2 cut(s) 690, 812
Alw26I GTCTC 1 cut(s) 604
Alw44I GTGCAC 1 cut(s) 808
AlwI GGATC 3 cut(s) 542, 829, 1118
AoxI GGCC 2 cut(s) 700, 1082
ApaLI GTGCAC 1 cut(s) 808
ApeKI GCWGC 9 cut(s) 20, 37, 299, 353, 443, 486, 635, 774, 1070
ApoI RAATTY 1 cut(s) 842
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 2 cut(s) 37, 1119
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 135, 260
AsuHPI GGTGA 2 cut(s) 901, 1072
AsuII TTCGAA 3 cut(s) 26, 141, 846
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 812
BanI GGYRCC 1 cut(s) 656
BanII GRGCYC 1 cut(s) 690
BauI CACGAG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 1017
Bbv12I GWGCWC 2 cut(s) 690, 812
BbvI GCAGC 9 cut(s) 24, 32, 286, 340, 455, 473, 647, 761, 1057
BccI CCATC 4 cut(s) 441, 500, 812, 852
BceAI ACGGC 2 cut(s) 644, 1069
BcgI CGANNNNNNTGC 2 cut(s) 1149, 1183
BciT130I CCWGG 2 cut(s) 207, 360
BcnI CCSGG 2 cut(s) 135, 260
BcoDI GTCTC 1 cut(s) 604
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 3 cut(s) 606, 639, 794
BfmI CTRYAG 1 cut(s) 448
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 1048
BlpI GCTNAGC 1 cut(s) 366
Bme1390I CCNGG 4 cut(s) 135, 207, 260, 360
Bme18I GGWCC 1 cut(s) 79
BmeRI GACNNNNNGTC 2 cut(s) 289, 1154
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 81, 658
BmrFI CCNGG 4 cut(s) 135, 207, 260, 360
BmsI GCATC 3 cut(s) 790, 877, 1057
BpiI GAAGAC 1 cut(s) 1017
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 3 cut(s) 26, 141, 846
BpuEI CTTGAG 1 cut(s) 1052
BpuMI CCSGG 2 cut(s) 135, 260
BsaHI GRCGYC 2 cut(s) 45, 290
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 1 cut(s) 614
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 321, 351
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 2 cut(s) 418, 888
BseBI CCWGG 2 cut(s) 207, 360
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 4 cut(s) 235, 805, 863, 892
BseMII CTCAG 3 cut(s) 159, 336, 1016
BseNI ACTGG 2 cut(s) 418, 888
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 9 cut(s) 24, 32, 286, 340, 455, 473, 647, 761, 1057
Bsh1236I CGCG 1 cut(s) 287
BshFI GGCC 2 cut(s) 702, 1084
BshNI GGYRCC 1 cut(s) 656
BsiHKAI GWGCWC 2 cut(s) 690, 812
BsiSI CCGG 5 cut(s) 32, 41, 135, 227, 259
BslFI GGGAC 1 cut(s) 523
BsmAI GTCTC 1 cut(s) 604
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 2 cut(s) 702, 1084
Bso31I GGTCTC 1 cut(s) 604
Bsp119I TTCGAA 3 cut(s) 26, 141, 846
Bsp1286I GDGCHC 2 cut(s) 690, 812
Bsp143I GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 614
BspACI CCGC 6 cut(s) 224, 287, 703, 777, 1049, 1146
BspANI GGCC 2 cut(s) 702, 1084
BspCNI CTCAG 3 cut(s) 160, 335, 1015
BspFNI CGCG 1 cut(s) 287
BspHI TCATGA 1 cut(s) 814
BspLI GGNNCC 2 cut(s) 81, 658
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 3 cut(s) 542, 829, 1118
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 3 cut(s) 26, 141, 846
BspT107I GGYRCC 1 cut(s) 656
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 1146
BsrFI RCCGGY 1 cut(s) 31
BsrI ACTGG 2 cut(s) 418, 888
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
BssNI GRCGYC 2 cut(s) 45, 290
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 614
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 2 cut(s) 207, 360
Bst4CI ACNGT 4 cut(s) 852, 913, 997, 1152
Bst6I CTCTTC 3 cut(s) 150, 225, 873
BstACI GRCGYC 2 cut(s) 45, 290
BstAPI GCANNNNNTGC 1 cut(s) 486
BstBI TTCGAA 3 cut(s) 26, 141, 846
BstC8I GCNNGC 2 cut(s) 33, 182
BstDEI CTNAG 4 cut(s) 168, 322, 366, 1002
BstDSI CCRYGG 1 cut(s) 614
BstF5I GGATG 4 cut(s) 235, 805, 863, 892
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 2 cut(s) 37, 1119
BstKTI GATC 6 cut(s) 148, 174, 334, 550, 824, 1126
BstMAI GTCTC 1 cut(s) 604
BstMBI GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
BstMWI GCNNNNNNNGC 5 cut(s) 37, 296, 308, 362, 486
BstNI CCWGG 2 cut(s) 207, 360
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 4 cut(s) 133, 205, 258, 358
BstSFI CTRYAG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 9 cut(s) 24, 32, 286, 340, 455, 473, 647, 761, 1057
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 2 cut(s) 702, 1084
BtgI CCRYGG 1 cut(s) 614
BtrI CACGTC 1 cut(s) 1015
BtsCI GGATG 4 cut(s) 235, 805, 863, 892
BtsIMutI CAGTG 1 cut(s) 857
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 2 cut(s) 33, 182
CciI TCATGA 1 cut(s) 814
CfoI GCGC 2 cut(s) 37, 1119
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 3 cut(s) 53, 279, 293
Csp6I GTAC 5 cut(s) 527, 742, 791, 881, 1103
CviAII CATG 5 cut(s) 335, 558, 615, 815, 833
CviQI GTAC 5 cut(s) 527, 742, 791, 881, 1103
DdeI CTNAG 4 cut(s) 168, 322, 366, 1002
DpnI GATC 6 cut(s) 147, 173, 333, 549, 823, 1125
DpnII GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
DriI GACNNNNNGTC 2 cut(s) 289, 1154
EaeI YGGCCR 2 cut(s) 700, 1082
Eam1104I CTCTTC 3 cut(s) 150, 225, 873
Eam1105I GACNNNNNGTC 2 cut(s) 289, 1154
EarI CTCTTC 3 cut(s) 150, 225, 873
EciI GGCGGA 1 cut(s) 213
Ecl136II GAGCTC 1 cut(s) 688
Eco130I CCWWGG 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 690
Eco31I GGTCTC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 83, 149, 902
EcoICRI GAGCTC 1 cut(s) 688
EcoRII CCWGG 2 cut(s) 205, 358
EcoRV GATATC 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 614
EcoT22I ATGCAT 2 cut(s) 256, 475
EcoT38I GRGCYC 1 cut(s) 690
ErhI CCWWGG 1 cut(s) 614
FaeI CATG 5 cut(s) 338, 561, 618, 818, 836
FaqI GGGAC 1 cut(s) 523
FatI CATG 5 cut(s) 334, 557, 614, 814, 832
FokI GGATG 4 cut(s) 242, 812, 870, 899
FriOI GRGCYC 1 cut(s) 690
FspBI CTAG 3 cut(s) 606, 639, 794
GlaI GCGC 2 cut(s) 36, 1118
GsuI CTGGAG 1 cut(s) 348
HaeII RGCGCY 1 cut(s) 38
HaeIII GGCC 2 cut(s) 702, 1084
HapII CCGG 5 cut(s) 32, 41, 135, 227, 259
HgaI GACGC 3 cut(s) 53, 279, 293
HhaI GCGC 2 cut(s) 37, 1119
Hin1I GRCGYC 2 cut(s) 45, 290
Hin1II CATG 5 cut(s) 338, 561, 618, 818, 836
Hin6I GCGC 2 cut(s) 35, 1117
HinP1I GCGC 2 cut(s) 35, 1117
HindIII AAGCTT 2 cut(s) 182, 368
HinfI GANTC 5 cut(s) 138, 150, 563, 673, 967
HpaII CCGG 5 cut(s) 32, 41, 135, 227, 259
HphI GGTGA 2 cut(s) 901, 1072
Hpy166II GTNNAC 3 cut(s) 600, 810, 881
Hpy188I TCNGA 6 cut(s) 63, 97, 237, 385, 547, 1005
Hpy188III TCNNGA 7 cut(s) 341, 683, 755, 815, 838, 1031, 1168
Hpy8I GTNNAC 3 cut(s) 600, 810, 881
Hpy99I CGWCG 1 cut(s) 879
HpyAV CCTTC 4 cut(s) 58, 58, 93, 398
HpyCH4III ACNGT 4 cut(s) 852, 913, 997, 1152
HpyCH4IV ACGT 3 cut(s) 115, 874, 1014
HpyCH4V TGCA 9 cut(s) 180, 254, 473, 803, 810, 890, 987, 1057, 1089
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 296, 308, 362, 486
HpyF3I CTNAG 4 cut(s) 168, 322, 366, 1002
HpySE526I ACGT 3 cut(s) 115, 874, 1014
Hsp92I GRCGYC 2 cut(s) 45, 290
Hsp92II CATG 5 cut(s) 338, 561, 618, 818, 836
HspAI GCGC 2 cut(s) 35, 1117
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 2 cut(s) 361, 933
Lsp1109I GCAGC 9 cut(s) 24, 32, 286, 340, 455, 473, 647, 761, 1057
LweI GCATC 3 cut(s) 790, 877, 1057
MaeI CTAG 3 cut(s) 606, 639, 794
MaeII ACGT 3 cut(s) 115, 874, 1014
MaeIII GTNAC 6 cut(s) 116, 409, 459, 583, 755, 1129
MalI GATC 6 cut(s) 147, 173, 333, 549, 823, 1125
MbiI CCGCTC 1 cut(s) 1146
MboI GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 690, 812
MluCI AATT 7 cut(s) 279, 397, 737, 825, 842, 1078, 1172
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 5 cut(s) 62, 256, 533, 917, 1027
Mph1103I ATGCAT 2 cut(s) 256, 475
MroNI GCCGGC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 2 cut(s) 828, 1183
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 5 cut(s) 32, 41, 135, 227, 259
MspR9I CCNGG 4 cut(s) 135, 207, 260, 360
MvaI CCWGG 2 cut(s) 207, 360
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 5 cut(s) 37, 296, 308, 362, 486
NaeI GCCGGC 1 cut(s) 33
NciI CCSGG 2 cut(s) 135, 260
NcoI CCATGG 1 cut(s) 614
NdeII GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 5 cut(s) 338, 561, 618, 818, 836
NlaIV GGNNCC 2 cut(s) 81, 658
NmuCI GTSAC 3 cut(s) 583, 755, 1129
NsiI ATGCAT 2 cut(s) 256, 475
NspI RCATGY 1 cut(s) 836
NspV TTCGAA 3 cut(s) 26, 141, 846
OliI CACNNNNGTG 1 cut(s) 711
PagI TCATGA 1 cut(s) 814
PaqCI CACCTGC 1 cut(s) 1048
PciI ACATGT 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 5 cut(s) 138, 150, 563, 673, 967
PscI ACATGT 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 690
Psp6I CCWGG 2 cut(s) 205, 358
PspGI CCWGG 2 cut(s) 205, 358
PspN4I GGNNCC 2 cut(s) 81, 658
PspPI GGNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 5 cut(s) 528, 743, 792, 882, 1104
RsaNI GTAC 5 cut(s) 527, 742, 791, 881, 1103
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 1 cut(s) 690
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 828, 1183
Sau3AI GATC 6 cut(s) 145, 171, 331, 547, 821, 1123
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 4 cut(s) 135, 207, 260, 360
SduI GDGCHC 2 cut(s) 690, 812
SfaNI GCATC 3 cut(s) 790, 877, 1057
SfcI CTRYAG 1 cut(s) 448
SfuI TTCGAA 3 cut(s) 26, 141, 846
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 7 cut(s) 279, 397, 737, 825, 842, 1078, 1172
SsiI CCGC 6 cut(s) 224, 287, 703, 777, 1049, 1146
SspI AATATT 1 cut(s) 767
SspMI CTAG 3 cut(s) 606, 639, 794
SstI GAGCTC 1 cut(s) 690
StyD4I CCNGG 4 cut(s) 133, 205, 258, 358
StyI CCWWGG 1 cut(s) 614
TaaI ACNGT 4 cut(s) 852, 913, 997, 1152
TaiI ACGT 3 cut(s) 118, 877, 1017
TaqII GACCGA 1 cut(s) 654
TasI AATT 7 cut(s) 279, 397, 737, 825, 842, 1078, 1172
TatI WGTACW 1 cut(s) 880
TauI GCSGC 3 cut(s) 290, 705, 780
TfiI GAWTC 5 cut(s) 138, 150, 563, 673, 967
Tru1I TTAA 2 cut(s) 828, 1183
Tru9I TTAA 2 cut(s) 828, 1183
TscAI CASTG 1 cut(s) 857
TseFI GTSAC 3 cut(s) 583, 755, 1129
TseI GCWGC 9 cut(s) 20, 37, 299, 353, 443, 486, 635, 774, 1070
Tsp45I GTSAC 3 cut(s) 583, 755, 1129
TspDTI ATGAA 1 cut(s) 1023
TspRI CASTG 1 cut(s) 857
VneI GTGCAC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 842
XceI RCATGY 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 3 cut(s) 606, 639, 794
Zsp2I ATGCAT 2 cut(s) 256, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.