pycom15g21490
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
15423401 .. 15426409
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g21490.8

Sequence Viewer

Length: 1182 bp
ATGGAAGAAGAAGAAGAAGCTTCGAAGCCGGCGCTGCCGGACGCCTTCCTCGATTTTCTGAAGGAGAACGGGTTGGACCCTTCCATTTATTCCGAGAGCCACTCTACCCCTCGTTACATAAGGTTAAAGCCTGGTTTGGAAGCTCGAATCGAAGAGATTGAAGCTGAGATCAAGTGGAAGCTTGAAGAAGTGGAATGGTTGCCTGGATTTTATGCTCTTCCGCCGGATGTACAGATTGCTAACTCAAATGCTTACCTGGAAGGGAAGATATATGGAATCGATGCGGCGTCTGGCGCTGCTGTTTCAGCATTGGATATCTCAGCTGGAGATCATGTTCTTGACCTTTGTGCTGCTCCTGGTGCTAAGCTTTGTATGATATCCGACCTTCTTGGTGATTCGGGTTCTGTAACTGGTGTTGATGTTTCAAGCCATCGTTTAGCAGCCTGTAGGACAATGTTGCAGAAATATGCATTGGGCAATCGCTGCCGACTATTTGTTGCTGATGGGACAAATTTTTCCCTCATACCCTGGAGAGTTCACTCAGATCCAAAATCATGTGAATCTGCTTTGGAAGAGAATGTGACATTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAACAAGCAGCTAGGATAAGAAAAAGTGGTGCTGTGCGGTTAGGGAATCAACTTCCAGACCTCATTTATTATGGCTGCCACTCTGGTGTGGTTGGACTGACTAAAAGTGAATTATACCAAACTTTTCATGACGACAAATATATCAGCTATGGCTATGACAAGGTCCTAGTGGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCAAGAAATTCGAACAGTGGGGCTGGGAAACTCTTCAACGCCGTGTACTGGATGCCGAGAGAAGTGATAGCCTCACTGTGCTTCAGTTGAAGCTCCTAACAAATGGTTTTCGATTGCTAAAAGCTGGGGGGATTCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAACGAAGATGTGGTAAAGCAGTTTCTCGAGGGAAATCCTTGTGCAGAATTGCAGGTGATAGATGCTGCTGAAAATTGGCCTTGCAAGAACGGGCGAATACCGAATACCCTGCGCTTTGATCCCTTGACTTCAAAAACGAGCGGACTGTTTGTCGCAAAGTTCTCGAAATTGACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

394

Amino Acids

43.73

Weight (kDa)

5.63

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1045
Acc36I ACCTGC 1 cut(s) 1045
AccBSI CCGCTC 1 cut(s) 1143
AciI CCGC 4 cut(s) 221, 284, 661, 1143
AclWI GGATC 3 cut(s) 539, 826, 1115
AcsI RAATTY 2 cut(s) 511, 839
AcuI CTGAAG 2 cut(s) 80, 899
AcyI GRCGYC 2 cut(s) 42, 287
AfaI GTAC 2 cut(s) 231, 879
AfiI CCNNNNNNNGG 1 cut(s) 880
AflIII ACRYGT 1 cut(s) 829
AgsI TTSAA 7 cut(s) 161, 185, 426, 589, 869, 922, 1134
AhdI GACNNNNNGTC 1 cut(s) 1151
AjnI CCWGG 5 cut(s) 130, 202, 255, 355, 527
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
AleI CACNNNNGTG 1 cut(s) 708
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
Alw21I GWGCWC 1 cut(s) 809
Alw26I GTCTC 1 cut(s) 601
Alw44I GTGCAC 1 cut(s) 805
AlwI GGATC 3 cut(s) 539, 826, 1115
Ama87I CYCGRG 1 cut(s) 1028
AoxI GGCC 1 cut(s) 1079
ApaLI GTGCAC 1 cut(s) 805
ApeKI GCWGC 8 cut(s) 34, 296, 350, 440, 483, 632, 699, 1067
ApoI RAATTY 2 cut(s) 511, 839
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 3 cut(s) 34, 296, 1116
AspS9I GGNCC 2 cut(s) 76, 787
AsuHPI GGTGA 2 cut(s) 404, 1069
AsuII TTCGAA 2 cut(s) 23, 843
AvaI CYCGRG 1 cut(s) 1028
AvaII GGWCC 2 cut(s) 76, 787
BaeGI GKGCMC 1 cut(s) 809
Bbv12I GWGCWC 1 cut(s) 809
BbvI GCAGC 8 cut(s) 21, 283, 337, 452, 470, 644, 686, 1054
BccI CCATC 3 cut(s) 438, 497, 809
BceAI ACGGC 1 cut(s) 858
BcgI CGANNNNNNTGC 4 cut(s) 1093, 1127, 1146, 1180
BciT130I CCWGG 5 cut(s) 132, 204, 257, 357, 529
BcoDI GTCTC 1 cut(s) 601
BfaI CTAG 3 cut(s) 603, 636, 791
BfmI CTRYAG 1 cut(s) 445
BfoI RGCGCY 2 cut(s) 35, 297
BfuAI ACCTGC 1 cut(s) 1045
BisI GCNGC 9 cut(s) 35, 285, 297, 351, 441, 484, 633, 700, 1068
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 9 cut(s) 36, 286, 298, 352, 442, 485, 634, 701, 1069
Bme1390I CCNGG 5 cut(s) 132, 204, 257, 357, 529
Bme18I GGWCC 2 cut(s) 76, 787
BmeRI GACNNNNNGTC 1 cut(s) 1151
BmeT110I CYCGRG 1 cut(s) 1028
BmgT120I GGNCC 2 cut(s) 76, 787
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 5 cut(s) 132, 204, 257, 357, 529
BmsI GCATC 4 cut(s) 271, 787, 874, 1054
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 2 cut(s) 345, 550
Bpu1102I GCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 2 cut(s) 23, 843
Bsa29I ATCGAT 1 cut(s) 279
BsaHI GRCGYC 2 cut(s) 42, 287
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 2 cut(s) 527, 611
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 318, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 880
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 415, 885
BseBI CCWGG 5 cut(s) 132, 204, 257, 357, 529
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 527, 611
BseGI GGATG 3 cut(s) 232, 802, 889
BseLI CCNNNNNNNGG 1 cut(s) 880
BseMII CTCAG 4 cut(s) 156, 333, 555, 1013
BseNI ACTGG 2 cut(s) 415, 885
BseSI GKGCMC 1 cut(s) 809
BseXI GCAGC 8 cut(s) 21, 283, 337, 452, 470, 644, 686, 1054
BseYI CCCAGC 2 cut(s) 855, 956
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 1 cut(s) 1081
BshVI ATCGAT 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 809
BsiHKCI CYCGRG 1 cut(s) 1028
BsiSI CCGG 3 cut(s) 29, 38, 224
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 880
BsmAI GTCTC 1 cut(s) 601
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 1 cut(s) 1081
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 1028
Bsp119I TTCGAA 2 cut(s) 23, 843
Bsp1286I GDGCHC 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 5 cut(s) 168, 328, 544, 818, 1120
Bsp1720I GCTNAGC 1 cut(s) 363
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 4 cut(s) 221, 284, 661, 1143
BspANI GGCC 1 cut(s) 1081
BspCNI CTCAG 4 cut(s) 157, 332, 554, 1012
BspDI ATCGAT 1 cut(s) 279
BspHI TCATGA 2 cut(s) 751, 811
BspLI GGNNCC 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 1045
BspPI GGATC 3 cut(s) 539, 826, 1115
BspQI GCTCTTC 1 cut(s) 222
BspT104I TTCGAA 2 cut(s) 23, 843
BspTNI GGTCTC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 28
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 2 cut(s) 415, 885
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 527, 611
BssMI GATC 5 cut(s) 168, 328, 544, 818, 1120
BssNI GRCGYC 2 cut(s) 42, 287
BssT1I CCWWGG 1 cut(s) 611
Bst2UI CCWGG 5 cut(s) 132, 204, 257, 357, 529
Bst4CI ACNGT 4 cut(s) 849, 910, 994, 1149
Bst6I CTCTTC 4 cut(s) 147, 222, 567, 870
BstACI GRCGYC 2 cut(s) 42, 287
BstAPI GCANNNNNTGC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 229
BstBI TTCGAA 2 cut(s) 23, 843
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 5 cut(s) 165, 319, 363, 541, 999
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 3 cut(s) 232, 802, 889
BstH2I RGCGCY 2 cut(s) 35, 297
BstHHI GCGC 3 cut(s) 34, 296, 1116
BstKTI GATC 5 cut(s) 171, 331, 547, 821, 1123
BstMAI GTCTC 1 cut(s) 601
BstMBI GATC 5 cut(s) 168, 328, 544, 818, 1120
BstMWI GCNNNNNNNGC 5 cut(s) 34, 293, 305, 359, 483
BstNI CCWGG 5 cut(s) 132, 204, 257, 357, 529
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 5 cut(s) 130, 202, 255, 355, 527
BstSFI CTRYAG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 809
BstV1I GCAGC 8 cut(s) 21, 283, 337, 452, 470, 644, 686, 1054
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
Bsu15I ATCGAT 1 cut(s) 279
BsuRI GGCC 1 cut(s) 1081
BsuTUI ATCGAT 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 3 cut(s) 232, 802, 889
BtsIMutI CAGTG 2 cut(s) 854, 906
BveI ACCTGC 1 cut(s) 1045
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 2 cut(s) 751, 811
CfoI GCGC 3 cut(s) 34, 296, 1116
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 76, 787
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 2 cut(s) 50, 276
Csp6I GTAC 2 cut(s) 230, 878
CviAII CATG 6 cut(s) 332, 555, 612, 752, 812, 830
CviQI GTAC 2 cut(s) 230, 878
DdeI CTNAG 5 cut(s) 165, 319, 363, 541, 999
DpnI GATC 5 cut(s) 170, 330, 546, 820, 1122
DpnII GATC 5 cut(s) 168, 328, 544, 818, 1120
DriI GACNNNNNGTC 1 cut(s) 1151
Eam1104I CTCTTC 4 cut(s) 147, 222, 567, 870
Eam1105I GACNNNNNGTC 1 cut(s) 1151
EarI CTCTTC 4 cut(s) 147, 222, 567, 870
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 611
Eco31I GGTCTC 1 cut(s) 601
Eco32I GATATC 2 cut(s) 316, 378
Eco47I GGWCC 2 cut(s) 76, 787
Eco57I CTGAAG 2 cut(s) 80, 899
Eco88I CYCGRG 1 cut(s) 1028
EcoO109I RGGNCCY 1 cut(s) 787
EcoRII CCWGG 5 cut(s) 130, 202, 255, 355, 527
EcoRV GATATC 2 cut(s) 316, 378
EcoT14I CCWWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 6 cut(s) 335, 558, 615, 755, 815, 833
FaqI GGGAC 1 cut(s) 520
FatI CATG 6 cut(s) 331, 554, 611, 751, 811, 829
Fnu4HI GCNGC 9 cut(s) 35, 285, 297, 351, 441, 484, 633, 700, 1068
FokI GGATG 3 cut(s) 239, 809, 896
Fsp4HI GCNGC 9 cut(s) 35, 285, 297, 351, 441, 484, 633, 700, 1068
FspBI CTAG 3 cut(s) 603, 636, 791
GlaI GCGC 3 cut(s) 33, 295, 1115
GluI GCNGC 9 cut(s) 35, 285, 297, 351, 441, 484, 633, 700, 1068
GsaI CCCAGC 2 cut(s) 859, 960
GsuI CTGGAG 2 cut(s) 345, 550
HaeII RGCGCY 2 cut(s) 35, 297
HaeIII GGCC 1 cut(s) 1081
HapII CCGG 3 cut(s) 29, 38, 224
HgaI GACGC 2 cut(s) 50, 276
HhaI GCGC 3 cut(s) 34, 296, 1116
Hin1I GRCGYC 2 cut(s) 42, 287
Hin1II CATG 6 cut(s) 335, 558, 615, 755, 815, 833
Hin6I GCGC 3 cut(s) 32, 294, 1114
HinP1I GCGC 3 cut(s) 32, 294, 1114
HindIII AAGCTT 3 cut(s) 18, 179, 365
HinfI GANTC 6 cut(s) 147, 276, 395, 560, 670, 964
HpaII CCGG 3 cut(s) 29, 38, 224
HphI GGTGA 2 cut(s) 404, 1069
Hpy166II GTNNAC 4 cut(s) 538, 597, 807, 878
Hpy188I TCNGA 5 cut(s) 60, 94, 382, 544, 1002
Hpy188III TCNNGA 7 cut(s) 338, 680, 752, 812, 835, 1028, 1165
Hpy8I GTNNAC 4 cut(s) 538, 597, 807, 878
HpyAV CCTTC 5 cut(s) 55, 55, 90, 254, 395
HpyCH4III ACNGT 4 cut(s) 849, 910, 994, 1149
HpyCH4V TGCA 8 cut(s) 460, 470, 800, 807, 984, 1046, 1054, 1086
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 293, 305, 359, 483
HpyF3I CTNAG 5 cut(s) 165, 319, 363, 541, 999
Hsp92I GRCGYC 2 cut(s) 42, 287
Hsp92II CATG 6 cut(s) 335, 558, 615, 755, 815, 833
HspAI GCGC 3 cut(s) 32, 294, 1114
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 168, 328, 544, 818, 1120
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 358, 930
Lsp1109I GCAGC 8 cut(s) 21, 283, 337, 452, 470, 644, 686, 1054
LweI GCATC 4 cut(s) 271, 787, 874, 1054
MaeI CTAG 3 cut(s) 603, 636, 791
MaeIII GTNAC 3 cut(s) 113, 406, 580
MalI GATC 5 cut(s) 170, 330, 546, 820, 1122
MbiI CCGCTC 1 cut(s) 1143
MboI GATC 5 cut(s) 168, 328, 544, 818, 1120
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 809
MluCI AATT 7 cut(s) 511, 734, 822, 839, 1049, 1075, 1169
MmeI TCCRAC 3 cut(s) 54, 405, 697
MnlI CCTC 6 cut(s) 59, 120, 530, 695, 914, 1024
Mph1103I ATGCAT 1 cut(s) 472
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 3 cut(s) 125, 825, 1180
MslI CAYNNNNRTG 1 cut(s) 708
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 3 cut(s) 29, 38, 224
MspR9I CCNGG 5 cut(s) 132, 204, 257, 357, 529
MvaI CCWGG 5 cut(s) 132, 204, 257, 357, 529
MwoI GCNNNNNNNGC 5 cut(s) 34, 293, 305, 359, 483
NaeI GCCGGC 1 cut(s) 30
NcoI CCATGG 1 cut(s) 611
NdeII GATC 5 cut(s) 168, 328, 544, 818, 1120
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 6 cut(s) 335, 558, 615, 755, 815, 833
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 472
NspI RCATGY 1 cut(s) 833
NspV TTCGAA 2 cut(s) 23, 843
OliI CACNNNNGTG 1 cut(s) 708
PaeR7I CTCGAG 1 cut(s) 1028
PagI TCATGA 2 cut(s) 751, 811
PaqCI CACCTGC 1 cut(s) 1045
PciI ACATGT 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 6 cut(s) 147, 276, 395, 560, 670, 964
PflFI GACNNNGTC 1 cut(s) 785
PkrI GCNGC 9 cut(s) 36, 286, 298, 352, 442, 485, 634, 701, 1069
PpuMI RGGWCCY 1 cut(s) 787
PscI ACATGT 1 cut(s) 829
Psp5II RGGWCCY 1 cut(s) 787
Psp6I CCWGG 5 cut(s) 130, 202, 255, 355, 527
PspFI CCCAGC 2 cut(s) 855, 956
PspGI CCWGG 5 cut(s) 130, 202, 255, 355, 527
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 2 cut(s) 76, 787
PspPPI RGGWCCY 1 cut(s) 787
PsuI RGATCY 1 cut(s) 544
PsyI GACNNNGTC 1 cut(s) 785
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 231, 879
RsaNI GTAC 2 cut(s) 230, 878
RseI CAYNNNNRTG 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 125, 825, 1180
SatI GCNGC 9 cut(s) 35, 285, 297, 351, 441, 484, 633, 700, 1068
Sau3AI GATC 5 cut(s) 168, 328, 544, 818, 1120
Sau96I GGNCC 2 cut(s) 76, 787
ScrFI CCNGG 5 cut(s) 132, 204, 257, 357, 529
SduI GDGCHC 1 cut(s) 809
SfaNI GCATC 4 cut(s) 271, 787, 874, 1054
SfcI CTRYAG 1 cut(s) 445
Sfr274I CTCGAG 1 cut(s) 1028
SfuI TTCGAA 2 cut(s) 23, 843
SinI GGWCC 2 cut(s) 76, 787
SlaI CTCGAG 1 cut(s) 1028
SmiMI CAYNNNNRTG 1 cut(s) 708
SmlI CTYRAG 1 cut(s) 1028
SmoI CTYRAG 1 cut(s) 1028
Sse9I AATT 7 cut(s) 511, 734, 822, 839, 1049, 1075, 1169
SsiI CCGC 4 cut(s) 221, 284, 661, 1143
SspMI CTAG 3 cut(s) 603, 636, 791
StyD4I CCNGG 5 cut(s) 130, 202, 255, 355, 527
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 4 cut(s) 849, 910, 994, 1149
TaqI TCGA 9 cut(s) 23, 51, 145, 150, 279, 843, 943, 1029, 1166
TasI AATT 7 cut(s) 511, 734, 822, 839, 1049, 1075, 1169
TatI WGTACW 2 cut(s) 229, 877
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 6 cut(s) 147, 276, 395, 560, 670, 964
Tru1I TTAA 3 cut(s) 125, 825, 1180
Tru9I TTAA 3 cut(s) 125, 825, 1180
TscAI CASTG 2 cut(s) 854, 913
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 8 cut(s) 34, 296, 350, 440, 483, 632, 699, 1067
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 1 cut(s) 740
TspRI CASTG 2 cut(s) 854, 913
Tth111I GACNNNGTC 1 cut(s) 785
VneI GTGCAC 1 cut(s) 805
VpaK11BI GGWCC 2 cut(s) 76, 787
XapI RAATTY 2 cut(s) 511, 839
XceI RCATGY 1 cut(s) 833
XhoI CTCGAG 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 3 cut(s) 603, 636, 791
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.