Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006808

Physical Location & Seq

Genomic Coordinates Forward (+)

7017823 .. 7019558

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTTACAGAAATATGCATTGGGCAATCTCTGCCGACTATTTGTTGCTGATGGGACAACTTTTTCCCTCGTACCCACGAGAGTTCTTTCAGATCCAAAATCATGTGAATCTATTTTGGAAGAAAATGTGACATTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAAGAAGCAGCTAGGGTAAGAAAAAATGGTGCCGTTCGGTCAGGGAATCAACTTCCAGAGCTCATTTATTATGGCCACCACTCTGGTGTGGTTGGACTGACTAGAAGTGAATTGTACCAAACTTTTCGTGACAGCGAATATTTGAGCCGCGGCTATGACAAGGTACTAGTGGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAGAAATTCGAACAGTGGGGATGGGAAACTCTTCAACGTCGTGTACTGGATGCAGAAAGAAGTGATAGCCTCACCGTGCTTCAGTTGAAGCTCCTAACCAATGGTTTTCGATTGCTAAAATCTGGGGGGATTCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAATGAAGACGTGGTAAAGCAGTTTCTTGAGGGAAATCCTTGTGCAGAGTTGCAGGCGATAGATGCTGCTGAAAATTGGCCGTGCAAGAACGGGCGAGTACCAAATACCTTGCGCTTCGATCCCGTGACTTCAAAAACGAGCGGACTGTTTGTCGCAAAGTTCTCGAATTTGACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

243

Amino Acids

27.37

Weight (kDa)

8.69

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66180 AT5G66180 AT5G66180
fragaria_vesca	FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660
malus_domestica	MD02G1129700.v1.1 MD15G1244000.v1.1
prunus_persica	Prupe.7G169900_v2.0.a1
pyrus_communis	pycom02g10170 pycom15g21490
rosa_chinensis	RchiOBHm_Chr2g0099251
rosa_laevigata	RLG00000016865
rosa_multiflora	Rmu_sc0002025.1_g000004 Rmu_sc0036312.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143280
rosa_rugosa	Rorug02G0078200
rosa_samantha	Rh2AG127400 Rh2BG130400 Rh2CG131600 Rh2DG132000
rosa_wichuraiana	Rw2G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	690
AccII	CGCG	1 cut(s)	321
AciI	CCGC	3 cut(s)	319, 321, 690
AclWI	GGATC	3 cut(s)	86, 373, 662
AcoI	YGGCCR	2 cut(s)	244, 626
AcsI	RAATTY	2 cut(s)	386, 715
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	5 cut(s)	72, 287, 336, 426, 648
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	4 cut(s)	136, 416, 469, 681
AhdI	GACNNNNNGTC	1 cut(s)	698
AhlI	ACTAGT	1 cut(s)	337
AjiI	CACGTC	1 cut(s)	559
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	182, 232, 472
AluI	AGCT	3 cut(s)	182, 232, 472
Alw21I	GWGCWC	2 cut(s)	234, 356
Alw26I	GTCTC	1 cut(s)	148
Alw44I	GTGCAC	1 cut(s)	352
AlwI	GGATC	3 cut(s)	86, 373, 662
AoxI	GGCC	2 cut(s)	244, 626
ApaLI	GTGCAC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	179, 614
ApoI	RAATTY	2 cut(s)	386, 715
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	663
AsuHPI	GGTGA	1 cut(s)	445
AsuII	TTCGAA	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	356
BalI	TGGCCA	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	234, 356
BbvI	GCAGC	2 cut(s)	191, 601
BccI	CCATC	3 cut(s)	44, 356, 396
BceAI	ACGGC	2 cut(s)	188, 613
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BcoDI	GTCTC	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	4 cut(s)	150, 183, 273, 338
BisI	GCNGC	4 cut(s)	180, 319, 322, 615
BlsI	GCNGC	4 cut(s)	181, 320, 323, 616
BmeRI	GACNNNNNGTC	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	202
BmsI	GCATC	3 cut(s)	334, 421, 601
BpiI	GAAGAC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	596
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	158, 319
Bse1I	ACTGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	158, 319
BseGI	GGATG	3 cut(s)	349, 407, 436
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	191, 601
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	246, 628
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	234, 356
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	246, 628
Bso31I	GGTCTC	1 cut(s)	148
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	234, 356
Bsp143I	GATC	3 cut(s)	91, 365, 667
Bsp19I	CCATGG	1 cut(s)	158
BspACI	CCGC	3 cut(s)	319, 321, 690
BspANI	GGCC	2 cut(s)	246, 628
BspCNI	CTCAG	1 cut(s)	559
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	86, 373, 662
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	158, 319
BssMI	GATC	3 cut(s)	91, 365, 667
BssSI	CACGAG	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	158
Bst2BI	CACGAG	1 cut(s)	76
Bst4CI	ACNGT	4 cut(s)	396, 457, 541, 696
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	2 cut(s)	158, 319
BstF5I	GGATG	3 cut(s)	349, 407, 436
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	3 cut(s)	94, 368, 670
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	3 cut(s)	91, 365, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 611
BstNSI	RCATGY	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	356
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	191, 601
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	91
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	246, 628
BtgI	CCRYGG	2 cut(s)	158, 319
BtrI	CACGTC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	349, 407, 436
BtsIMutI	CAGTG	1 cut(s)	401
Cac8I	GCNNGC	1 cut(s)	603
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	663
Cfr42I	CCGCGG	1 cut(s)	322
Csp6I	GTAC	5 cut(s)	71, 286, 335, 425, 647
CviAII	CATG	4 cut(s)	102, 159, 359, 377
CviJI	RGCY	8 cut(s)	182, 232, 246, 318, 324, 450, 472, 628
CviKI_1	RGCY	8 cut(s)	182, 232, 246, 318, 324, 450, 472, 628
CviQI	GTAC	5 cut(s)	71, 286, 335, 425, 647
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	3 cut(s)	93, 367, 669
DpnII	GATC	3 cut(s)	91, 365, 667
DriI	GACNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	2 cut(s)	244, 626
Eam1104I	CTCTTC	1 cut(s)	417
Eam1105I	GACNNNNNGTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	158
FaeI	CATG	4 cut(s)	105, 162, 362, 380
FaiI	YATR	8 cut(s)	15, 103, 160, 243, 327, 360, 378, 522
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	101, 158, 358, 376
Fnu4HI	GCNGC	4 cut(s)	180, 319, 322, 615
FokI	GGATG	3 cut(s)	356, 414, 443
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	4 cut(s)	180, 319, 322, 615
FspBI	CTAG	4 cut(s)	150, 183, 273, 338
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	4 cut(s)	180, 319, 322, 615
HaeIII	GGCC	2 cut(s)	246, 628
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	4 cut(s)	105, 162, 362, 380
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	107, 217, 511
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	3 cut(s)	144, 354, 425
Hpy188I	TCNGA	2 cut(s)	91, 549
Hpy188III	TCNNGA	6 cut(s)	227, 299, 359, 382, 575, 712
Hpy8I	GTNNAC	3 cut(s)	144, 354, 425
Hpy99I	CGWCG	1 cut(s)	423
HpyCH4III	ACNGT	4 cut(s)	396, 457, 541, 696
HpyCH4IV	ACGT	2 cut(s)	418, 558
HpyCH4V	TGCA	8 cut(s)	17, 347, 354, 434, 531, 593, 601, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 611
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	2 cut(s)	418, 558
Hsp92II	CATG	4 cut(s)	105, 162, 362, 380
HspAI	GCGC	1 cut(s)	661
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	91, 365, 667
LmnI	GCTCC	1 cut(s)	477
LpnPI	CCDG	7 cut(s)	198, 240, 240, 395, 413, 489, 587
Lsp1109I	GCAGC	2 cut(s)	191, 601
LweI	GCATC	3 cut(s)	334, 421, 601
MaeI	CTAG	4 cut(s)	150, 183, 273, 338
MaeII	ACGT	2 cut(s)	418, 558
MaeIII	GTNAC	4 cut(s)	3, 127, 299, 673
MalI	GATC	3 cut(s)	93, 367, 669
MbiI	CCGCTC	1 cut(s)	690
MboI	GATC	3 cut(s)	91, 365, 667
MboII	GAAGA	3 cut(s)	131, 404, 566
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	234, 356
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	5 cut(s)	281, 369, 386, 622, 715
MluNI	TGGCCA	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	77, 461, 571
Mox20I	TGGCCA	1 cut(s)	246
Mph1103I	ATGCAT	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	255
Msp20I	TGGCCA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	30, 611
NcoI	CCATGG	1 cut(s)	158
NdeII	GATC	3 cut(s)	91, 365, 667
NlaIII	CATG	4 cut(s)	105, 162, 362, 380
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	3 cut(s)	127, 299, 673
NsiI	ATGCAT	1 cut(s)	19
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	390
OliI	CACNNNNGTG	1 cut(s)	255
PagI	TCATGA	1 cut(s)	358
PciI	ACATGT	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	107, 217, 511
PkrI	GCNGC	4 cut(s)	181, 320, 323, 616
PscI	ACATGT	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	91
RsaI	GTAC	5 cut(s)	72, 287, 336, 426, 648
RsaNI	GTAC	5 cut(s)	71, 286, 335, 425, 647
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	234
SacII	CCGCGG	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	180, 319, 322, 615
Sau3AI	GATC	3 cut(s)	91, 365, 667
SduI	GDGCHC	2 cut(s)	234, 356
SetI	ASST	7 cut(s)	184, 234, 336, 421, 474, 561, 659
SfaNI	GCATC	3 cut(s)	334, 421, 601
Sfr303I	CCGCGG	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	390
SgrBI	CCGCGG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	5 cut(s)	281, 369, 386, 622, 715
SsiI	CCGC	3 cut(s)	319, 321, 690
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	4 cut(s)	150, 183, 273, 338
SstI	GAGCTC	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	158
TaaI	ACNGT	4 cut(s)	396, 457, 541, 696
TaiI	ACGT	2 cut(s)	421, 561
TaqI	TCGA	4 cut(s)	390, 490, 666, 713
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	5 cut(s)	281, 369, 386, 622, 715
TatI	WGTACW	1 cut(s)	424
TauI	GCSGC	2 cut(s)	321, 324
TfiI	GAWTC	3 cut(s)	107, 217, 511
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	401
TseFI	GTSAC	3 cut(s)	127, 299, 673
TseI	GCWGC	2 cut(s)	179, 614
Tsp45I	GTSAC	3 cut(s)	127, 299, 673
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	401
VneI	GTGCAC	1 cut(s)	352
XapI	RAATTY	2 cut(s)	386, 715
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	4 cut(s)	150, 183, 273, 338
Zsp2I	ATGCAT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.