FvH4_1g11660
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006808
Physical Location & Seq
Forward (+)
6366132 .. 6369026
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11660.t5

Sequence Viewer

Length: 1188 bp
ATGGAAGAAGAAGAAGCAGCAGCTTCAAACTCACCGGCGTTGCCGGAAGCCTTCCTCGATTTCCTGAAACACAACGGACTCGACCCTTCCATTTACACCGCCACCCACTCCACCCCTCGTTACATAAGGGTGAAGCCTGGGTGTGAAGATCAAATTGAATCAATTGAAGGTGAAATAAAGTGCAAGCTTGAAAGAGTGGAGTGGTTGCCTGGGTTTTACTCTCTACCCCCAGATGTTCATATTGCTAATTCAAATGCGTACAGAGAAGGGAAGATATATGGAATCGATGCGGCGTCAGGAGCTGCTGTTTCGGCATTGGATGTTTCAGCTGGAGATCATGTTCTTGATCTTTGCGCCGCTCCGGGTGCTAAGCTTTGTCTGATATCGGATCTTCTTGATGATTCGGGTTCTGTGACTGGCGTTGATGTTTCAAGACACCGACTGGCGGCTTGTAGGACTATGCTGCAGAAATATGCTTTGGGCAGTCGCTGCCGACTCTTTGTTGCTGATGGTACTACTTTTTCCATCATTCCCATGAGCAATCATGCTGATTCTAAATCATGTGAATCTGGATTAGAGGAAAATGTGACATTCAAGGAGTGGACGTCTAGGAGACCATGGAAAGAAAGGAAACAAGCAGCTAGGATAAGAAAAGGTGGTGCAGTGCATTCAGGGACTCAACAACCAGAGCTCATTTATTATGGCTGCCAATCTGGTGTGGTAGGGTTAAAGAAAAGTGAATTGTACCAAACTTTTTGTGACAGTCAGATTTTGAGCTGTGGCTATGACAAGGTCCTTGTTGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAAAAATTTGAACATTGGGGTTGGGACACTCTTCAACGCCGTGTATTGGATGCAGAGAGAGGTGATAGCCTCACTGCACTTCAATTAAAACTCCTGACGAATGGTTTTAGATTGCTAAAAGCTGGCGGACTGCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAATGAAGATGTGGTAAAGCAGTTTCTTGAGGAAAACTATTCTGCCGAGTTGCTGGCGATAGATGCTGCTGAAAATTGGCCTTGCAAGAGCGGGCGAATGCCAAAAACCCTGCGCTTTGATCCTTTGACTTCGAACACTAGTGGATTGTTTGTAGCAAAGTTTACAAAATTTGCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltr_RsmB-F

Protein Analysis

396

Amino Acids

43.47

Weight (kDa)

5.86

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 105 - 174 3.1e-09 16S rRNA methyltransferase RsmB/F
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 608
AccBSI CCGCTC 2 cut(s) 359, 1098
AciI CCGC 6 cut(s) 99, 290, 357, 446, 966, 1098
AclWI GGATC 3 cut(s) 396, 832, 1121
AcsI RAATTY 2 cut(s) 845, 1175
AcyI GRCGYC 2 cut(s) 293, 605
AfaI GTAC 3 cut(s) 260, 514, 746
AfiI CCNNNNNNNGG 2 cut(s) 445, 886
AflIII ACRYGT 1 cut(s) 835
AhlI ACTAGT 1 cut(s) 1145
AjnI CCWGG 2 cut(s) 136, 208
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 9 cut(s) 23, 187, 302, 329, 373, 641, 691, 777, 962
AluI AGCT 9 cut(s) 23, 187, 302, 329, 373, 641, 691, 777, 962
Alw21I GWGCWC 2 cut(s) 693, 815
Alw26I GTCTC 1 cut(s) 607
Alw44I GTGCAC 1 cut(s) 811
AlwI GGATC 3 cut(s) 396, 832, 1121
AlwNI CAGNNNCTG 2 cut(s) 302, 489
AoxI GGCC 1 cut(s) 1085
ApaLI GTGCAC 1 cut(s) 811
ApeKI GCWGC 8 cut(s) 17, 20, 302, 463, 489, 638, 705, 1073
ApoI RAATTY 2 cut(s) 845, 1175
AspLEI GCGC 2 cut(s) 356, 1122
AspS9I GGNCC 1 cut(s) 793
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 4 cut(s) 24, 142, 182, 914
AsuII TTCGAA 1 cut(s) 1139
AvaII GGWCC 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 815
BanII GRGCYC 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 693, 815
BbvI GCAGC 8 cut(s) 29, 32, 289, 450, 476, 650, 692, 1060
BccI CCATC 3 cut(s) 503, 533, 815
BceAI ACGGC 1 cut(s) 864
BciT130I CCWGG 2 cut(s) 138, 210
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 607
BcuI ACTAGT 1 cut(s) 1145
BfaI CTAG 3 cut(s) 609, 642, 1146
BfmI CTRYAG 1 cut(s) 464
BlpI GCTNAGC 1 cut(s) 369
Bme1390I CCNGG 3 cut(s) 138, 210, 363
Bme18I GGWCC 1 cut(s) 793
BmgT120I GGNCC 1 cut(s) 793
BmrFI CCNGG 3 cut(s) 138, 210, 363
BmsI GCATC 4 cut(s) 277, 793, 880, 1060
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 1139
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 293, 605
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 137, 209, 617
BsaXI ACNNNNNCTCC 6 cut(s) 291, 321, 324, 354, 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 445, 886
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 421, 447
BseBI CCWGG 2 cut(s) 138, 210
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 137, 209, 617
BseGI GGATG 2 cut(s) 325, 895
BseLI CCNNNNNNNGG 2 cut(s) 445, 886
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 2 cut(s) 421, 447
BseSI GKGCMC 1 cut(s) 815
BseXI GCAGC 8 cut(s) 29, 32, 289, 450, 476, 650, 692, 1060
BsgI GTGCAG 2 cut(s) 681, 900
BshFI GGCC 1 cut(s) 1087
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 693, 815
BsiSI CCGG 3 cut(s) 35, 44, 362
BslFI GGGAC 2 cut(s) 688, 878
BslI CCNNNNNNNGG 2 cut(s) 445, 886
BsmAI GTCTC 1 cut(s) 607
BsmFI GGGAC 2 cut(s) 688, 878
BsmI GAATGC 2 cut(s) 667, 1110
BsnI GGCC 1 cut(s) 1087
Bso31I GGTCTC 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 1139
Bsp1286I GDGCHC 2 cut(s) 693, 815
Bsp143I GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 6 cut(s) 99, 290, 357, 446, 966, 1098
BspANI GGCC 1 cut(s) 1087
BspCNI CTCAG 1 cut(s) 1018
BspDI ATCGAT 1 cut(s) 285
BspHI TCATGA 1 cut(s) 817
BspMAI CTGCAG 1 cut(s) 468
BspPI GGATC 3 cut(s) 396, 832, 1121
BspT104I TTCGAA 1 cut(s) 1139
BspTNI GGTCTC 1 cut(s) 607
BsrBI CCGCTC 2 cut(s) 359, 1098
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 421, 447
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 137, 209, 617
BssMI GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
BssNI GRCGYC 2 cut(s) 293, 605
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 138, 210
Bst4CI ACNGT 2 cut(s) 764, 1000
Bst6I CTCTTC 1 cut(s) 876
BstACI GRCGYC 2 cut(s) 293, 605
BstAPI GCANNNNNTGC 1 cut(s) 489
BstBI TTCGAA 1 cut(s) 1139
BstC8I GCNNGC 4 cut(s) 185, 964, 1062, 1100
BstDEI CTNAG 2 cut(s) 369, 1005
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 2 cut(s) 325, 895
BstHHI GCGC 2 cut(s) 356, 1122
BstKTI GATC 6 cut(s) 151, 337, 349, 391, 827, 1129
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
BstMWI GCNNNNNNNGC 5 cut(s) 299, 311, 365, 489, 1070
BstNI CCWGG 2 cut(s) 138, 210
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 3 cut(s) 136, 208, 361
BstSFI CTRYAG 1 cut(s) 464
BstSLI GKGCMC 1 cut(s) 815
BstV1I GCAGC 8 cut(s) 29, 32, 289, 450, 476, 650, 692, 1060
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 1087
BsuTUI ATCGAT 1 cut(s) 285
BtgI CCRYGG 1 cut(s) 617
BtsCI GGATG 2 cut(s) 325, 895
BtsI GCAGTG 2 cut(s) 669, 912
BtsIMutI CAGTG 2 cut(s) 669, 912
Cac8I GCNNGC 4 cut(s) 185, 964, 1062, 1100
CaiI CAGNNNCTG 2 cut(s) 302, 489
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 356, 1122
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 793
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 282
Csp6I GTAC 3 cut(s) 259, 513, 745
CviAII CATG 7 cut(s) 338, 535, 545, 561, 618, 818, 836
CviQI GTAC 3 cut(s) 259, 513, 745
DdeI CTNAG 2 cut(s) 369, 1005
DpnI GATC 6 cut(s) 150, 336, 348, 390, 826, 1128
DpnII GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
EciI GGCGGA 1 cut(s) 981
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 617
Eco24I GRGCYC 1 cut(s) 693
Eco31I GGTCTC 1 cut(s) 607
Eco32I GATATC 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 793
Eco53kI GAGCTC 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 793
EcoRII CCWGG 2 cut(s) 136, 208
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 617
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 7 cut(s) 341, 538, 548, 564, 621, 821, 839
FaqI GGGAC 2 cut(s) 688, 878
FatI CATG 7 cut(s) 337, 534, 544, 560, 617, 817, 835
FauI CCCGC 1 cut(s) 1091
FokI GGATG 2 cut(s) 332, 902
FriOI GRGCYC 1 cut(s) 693
FspBI CTAG 3 cut(s) 609, 642, 1146
GlaI GCGC 2 cut(s) 355, 1121
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 1087
HapII CCGG 3 cut(s) 35, 44, 362
HgaI GACGC 1 cut(s) 282
HhaI GCGC 2 cut(s) 356, 1122
Hin1I GRCGYC 2 cut(s) 293, 605
Hin1II CATG 7 cut(s) 341, 538, 548, 564, 621, 821, 839
Hin6I GCGC 2 cut(s) 354, 1120
HinP1I GCGC 2 cut(s) 354, 1120
HindIII AAGCTT 2 cut(s) 185, 371
HinfI GANTC 8 cut(s) 78, 158, 282, 401, 495, 551, 566, 676
HpaII CCGG 3 cut(s) 35, 44, 362
HphI GGTGA 4 cut(s) 24, 142, 182, 914
Hpy166II GTNNAC 3 cut(s) 603, 813, 1170
Hpy188I TCNGA 4 cut(s) 381, 388, 768, 1008
Hpy188III TCNNGA 9 cut(s) 64, 297, 344, 395, 432, 570, 818, 934, 1034
Hpy8I GTNNAC 3 cut(s) 603, 813, 1170
HpyAV CCTTC 4 cut(s) 61, 96, 161, 260
HpyCH4III ACNGT 2 cut(s) 764, 1000
HpyCH4IV ACGT 1 cut(s) 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 311, 365, 489, 1070
HpyF3I CTNAG 2 cut(s) 369, 1005
HpySE526I ACGT 1 cut(s) 605
Hsp92I GRCGYC 2 cut(s) 293, 605
Hsp92II CATG 7 cut(s) 341, 538, 548, 564, 621, 821, 839
HspAI GCGC 2 cut(s) 354, 1120
Kzo9I GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
LmnI GCTCC 2 cut(s) 299, 364
Lsp1109I GCAGC 8 cut(s) 29, 32, 289, 450, 476, 650, 692, 1060
LweI GCATC 4 cut(s) 277, 793, 880, 1060
MaeI CTAG 3 cut(s) 609, 642, 1146
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 4 cut(s) 119, 412, 586, 758
MalI GATC 6 cut(s) 150, 336, 348, 390, 826, 1128
MbiI CCGCTC 2 cut(s) 359, 1098
MboI GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
MboII GAAGA 8 cut(s) 17, 20, 23, 158, 283, 383, 863, 1025
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 2 cut(s) 693, 815
MluCI AATT 9 cut(s) 153, 162, 247, 740, 828, 845, 923, 1081, 1175
MlyI GAGTC 3 cut(s) 72, 489, 670
MnlI CCTC 6 cut(s) 65, 126, 571, 893, 920, 1030
MseI TTAA 4 cut(s) 728, 831, 926, 1186
MslI CAYNNNNRTG 2 cut(s) 128, 533
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 35, 44, 362
MspR9I CCNGG 3 cut(s) 138, 210, 363
MunI CAATTG 1 cut(s) 162
Mva1269I GAATGC 2 cut(s) 667, 1110
MvaI CCWGG 2 cut(s) 138, 210
MwoI GCNNNNNNNGC 5 cut(s) 299, 311, 365, 489, 1070
NciI CCSGG 1 cut(s) 363
NcoI CCATGG 1 cut(s) 617
NdeII GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
NlaIII CATG 7 cut(s) 341, 538, 548, 564, 621, 821, 839
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 3 cut(s) 412, 586, 758
NspI RCATGY 1 cut(s) 839
NspV TTCGAA 1 cut(s) 1139
PagI TCATGA 1 cut(s) 817
PciI ACATGT 1 cut(s) 835
PctI GAATGC 2 cut(s) 667, 1110
PfeI GAWTC 5 cut(s) 158, 282, 401, 551, 566
PflFI GACNNNGTC 1 cut(s) 791
PleI GAGTC 3 cut(s) 72, 489, 670
PpsI GAGTC 3 cut(s) 72, 489, 670
PpuMI RGGWCCY 1 cut(s) 793
PscI ACATGT 1 cut(s) 835
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 793
Psp6I CCWGG 2 cut(s) 136, 208
PspGI CCWGG 2 cut(s) 136, 208
PspPI GGNCC 1 cut(s) 793
PspPPI RGGWCCY 1 cut(s) 793
PstI CTGCAG 1 cut(s) 468
PstNI CAGNNNCTG 2 cut(s) 302, 489
PsuI RGATCY 1 cut(s) 388
PsyI GACNNNGTC 1 cut(s) 791
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 260, 514, 746
RsaNI GTAC 3 cut(s) 259, 513, 745
RseI CAYNNNNRTG 2 cut(s) 128, 533
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 4 cut(s) 728, 831, 926, 1186
Sau3AI GATC 6 cut(s) 148, 334, 346, 388, 824, 1126
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 3 cut(s) 72, 489, 670
ScrFI CCNGG 3 cut(s) 138, 210, 363
SduI GDGCHC 2 cut(s) 693, 815
SfaNI GCATC 4 cut(s) 277, 793, 880, 1060
SfcI CTRYAG 1 cut(s) 464
SfuI TTCGAA 1 cut(s) 1139
SgrAI CRCCGGYG 1 cut(s) 34
SinI GGWCC 1 cut(s) 793
SmiMI CAYNNNNRTG 2 cut(s) 128, 533
SmlI CTYRAG 1 cut(s) 1034
SmoI CTYRAG 1 cut(s) 1034
SpeI ACTAGT 1 cut(s) 1145
Sse9I AATT 9 cut(s) 153, 162, 247, 740, 828, 845, 923, 1081, 1175
SsiI CCGC 6 cut(s) 99, 290, 357, 446, 966, 1098
SspMI CTAG 3 cut(s) 609, 642, 1146
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 136, 208, 361
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 2 cut(s) 764, 1000
TaiI ACGT 1 cut(s) 608
TaqI TCGA 4 cut(s) 57, 81, 285, 1139
TasI AATT 9 cut(s) 153, 162, 247, 740, 828, 845, 923, 1081, 1175
TauI GCSGC 3 cut(s) 293, 359, 449
TfiI GAWTC 5 cut(s) 158, 282, 401, 551, 566
Tru1I TTAA 4 cut(s) 728, 831, 926, 1186
Tru9I TTAA 4 cut(s) 728, 831, 926, 1186
TscAI CASTG 2 cut(s) 669, 919
TseFI GTSAC 3 cut(s) 412, 586, 758
TseI GCWGC 8 cut(s) 17, 20, 302, 463, 489, 638, 705, 1073
Tsp45I GTSAC 3 cut(s) 412, 586, 758
TspDTI ATGAA 2 cut(s) 227, 1026
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 2 cut(s) 669, 919
Tth111I GACNNNGTC 1 cut(s) 791
VneI GTGCAC 1 cut(s) 811
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 2 cut(s) 845, 1175
XceI RCATGY 1 cut(s) 839
XspI CTAG 3 cut(s) 609, 642, 1146
ZraI GACGTC 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.