Rh2CG131600
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006808
Physical Location & Seq
Forward (+)
11720136 .. 11723581
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG131600.1

Sequence Viewer

Length: 1044 bp
ATGGAAGAAGAAGCTTCAAACTCATCGGCGTTGCCGGAAGCATTCATCGATTTCCTGAAACACAACGGACTCGACCCTTCCATCTACACCGCCTGCCACTCCACCCCTCGTTACATAAGGCTGAAACCTGGTTGCGAAGCTCAAATTGAAGCAATTGAAGGTGAAATCAAGTGCAAGCTTGAGAGAGTGGAGTGGTTGCCTGGCTTTTATTCTCTTCCCCCAGATGTTCAAATCGCTAATTCAAATGCGTACAGAGAAGGGAAGATATATGGAATCGATGCGGCGTCAGGAGCTGCTGTTTCAGCATTGGATATTTCGGCTGGAGATCATGTTCTTGATCTTTGCGCCGCGCCGGGTGCTAAGCTTTGTTTGATATCAGACATTCTGGGTGATTCGGGTTCAGTAACTGGCATTGATGTTTCAAGACACCGACTAGCGGCTTGTAGGACAATGCTGCAGAAATATGCATTGGGCAATCGCTGCCGGCTCTTCGTTGCTGATGGGACTACTTTTTCCATCATTCCCATGAGAGTTCATGCCAATTCTAAATCATGTGAATCTGGACTAGAGGAAAATGTGACATTTAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAAGAGGCAGCTAGGATAAGAAAAGGTGGTGCTGTGCTTTCAGGTCCAGAGCTCATCTATTATGGCTGCCAATCTGGTGTTGTCGGGCTAAAGAAAAGTGAACTGTACCGAACTTTTTGTGACACTGAGTTTTTGAGCTGTGGCTATGACAAGGTCCTAGTTGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAAAAATTTGAACACTGGGGTTGGGACACTCTTCAACGCCGTGTATTGGATGCAGAGAGAGGTGATAGCCTCACTGCACTTCAGGTATGTGATCTATGCTTTTTTTATACTTATTTGTTGACTTTGCTCCTTTGCATATTGTCAGAGTTCCAATTGATGGAGGATAAAACATTTCAGCTTCCTATTCTGATAAATTGTATAAGGTTAAAATCCCAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltr_RsmB-F

Protein Analysis

347

Amino Acids

38.6

Weight (kDa)

5.82

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltr_RsmB-F PF01189 102 - 170 1.5e-08 16S rRNA methyltransferase RsmB/F
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 979
AccII CGCG 1 cut(s) 350
AciI CCGC 4 cut(s) 90, 281, 348, 437
AclWI GGATC 1 cut(s) 814
AcsI RAATTY 1 cut(s) 827
AcuI CTGAAG 1 cut(s) 887
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 2 cut(s) 251, 728
AfiI CCNNNNNNNGG 3 cut(s) 436, 868, 979
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 8 cut(s) 18, 149, 158, 230, 243, 423, 833, 857
AjnI CCWGG 2 cut(s) 127, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 9 cut(s) 14, 140, 178, 293, 364, 632, 673, 759, 1000
AluI AGCT 9 cut(s) 14, 140, 178, 293, 364, 632, 673, 759, 1000
Alw21I GWGCWC 2 cut(s) 675, 797
Alw26I GTCTC 1 cut(s) 598
Alw44I GTGCAC 1 cut(s) 793
AlwI GGATC 1 cut(s) 814
AlwNI CAGNNNCTG 2 cut(s) 293, 407
ApaLI GTGCAC 1 cut(s) 793
ApeKI GCWGC 5 cut(s) 293, 454, 480, 629, 687
ApoI RAATTY 1 cut(s) 827
AspLEI GCGC 2 cut(s) 347, 352
AspS9I GGNCC 2 cut(s) 665, 775
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 173, 401, 896
AvaII GGWCC 2 cut(s) 665, 775
BaeGI GKGCMC 1 cut(s) 797
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 675, 797
BbvI GCAGC 5 cut(s) 280, 441, 467, 641, 674
BccI CCATC 5 cut(s) 89, 494, 524, 797, 973
BceAI ACGGC 1 cut(s) 846
BciT130I CCWGG 2 cut(s) 129, 201
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 598
BfaI CTAG 5 cut(s) 434, 566, 600, 633, 779
BfmI CTRYAG 1 cut(s) 455
BisI GCNGC 8 cut(s) 282, 294, 348, 438, 455, 481, 630, 688
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 8 cut(s) 283, 295, 349, 439, 456, 482, 631, 689
Bme1390I CCNGG 3 cut(s) 129, 201, 354
Bme18I GGWCC 2 cut(s) 665, 775
BmgT120I GGNCC 2 cut(s) 665, 775
BmrFI CCNGG 3 cut(s) 129, 201, 354
BmrI ACTGGG 2 cut(s) 847, 1030
BmsI GCATC 3 cut(s) 268, 775, 862
BmuI ACTGGG 2 cut(s) 847, 1030
BpmI CTGGAG 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 354
Bsa29I ATCGAT 2 cut(s) 48, 276
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 608
BsaXI ACNNNNNCTCC 4 cut(s) 282, 312, 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 436, 868, 979
Bse118I RCCGGY 1 cut(s) 483
Bse1I ACTGG 3 cut(s) 412, 842, 1036
BseBI CCWGG 2 cut(s) 129, 201
BseCI ATCGAT 2 cut(s) 48, 276
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 3 cut(s) 436, 868, 979
BseMII CTCAG 1 cut(s) 738
BseNI ACTGG 3 cut(s) 412, 842, 1036
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 5 cut(s) 280, 441, 467, 641, 674
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 350
BshVI ATCGAT 2 cut(s) 48, 276
BsiHKAI GWGCWC 2 cut(s) 675, 797
BsiSI CCGG 3 cut(s) 35, 353, 484
BslFI GGGAC 2 cut(s) 517, 860
BslI CCNNNNNNNGG 3 cut(s) 436, 868, 979
BsmAI GTCTC 1 cut(s) 598
BsmFI GGGAC 2 cut(s) 517, 860
BsmI GAATGC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 598
Bsp1286I GDGCHC 2 cut(s) 675, 797
Bsp143I GATC 4 cut(s) 325, 337, 806, 913
Bsp1720I GCTNAGC 1 cut(s) 360
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 4 cut(s) 90, 281, 348, 437
BspCNI CTCAG 1 cut(s) 739
BspDI ATCGAT 2 cut(s) 48, 276
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 1 cut(s) 799
BspMAI CTGCAG 1 cut(s) 459
BspPI GGATC 1 cut(s) 814
BspQI GCTCTTC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 483
BsrI ACTGG 3 cut(s) 412, 842, 1036
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 4 cut(s) 325, 337, 806, 913
BssNI GRCGYC 1 cut(s) 284
BssT1I CCWWGG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 129, 201
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 3 cut(s) 219, 494, 858
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 94, 176, 485
BstDEI CTNAG 2 cut(s) 360, 747
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 1 cut(s) 877
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 2 cut(s) 347, 352
BstKTI GATC 4 cut(s) 328, 340, 809, 916
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 325, 337, 806, 913
BstMWI GCNNNNNNNGC 4 cut(s) 290, 302, 356, 480
BstNI CCWGG 2 cut(s) 129, 201
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 3 cut(s) 127, 199, 352
BstSFI CTRYAG 1 cut(s) 455
BstSLI GKGCMC 1 cut(s) 797
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 5 cut(s) 280, 441, 467, 641, 674
Bsu15I ATCGAT 2 cut(s) 48, 276
BsuTUI ATCGAT 2 cut(s) 48, 276
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 3 cut(s) 744, 835, 894
Cac8I GCNNGC 3 cut(s) 94, 176, 485
CaiI CAGNNNCTG 2 cut(s) 293, 407
CciI TCATGA 1 cut(s) 799
CfoI GCGC 2 cut(s) 347, 352
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 665, 775
ClaI ATCGAT 2 cut(s) 48, 276
CseI GACGC 1 cut(s) 273
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 250, 727
CviAII CATG 7 cut(s) 329, 526, 536, 552, 609, 800, 818
CviQI GTAC 2 cut(s) 250, 727
DdeI CTNAG 2 cut(s) 360, 747
DpnI GATC 4 cut(s) 327, 339, 808, 915
DpnII GATC 4 cut(s) 325, 337, 806, 913
Eam1104I CTCTTC 3 cut(s) 219, 494, 858
EarI CTCTTC 3 cut(s) 219, 494, 858
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 675
Eco31I GGTCTC 1 cut(s) 598
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 665, 775
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 127, 199
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 608
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 608
FaeI CATG 7 cut(s) 332, 529, 539, 555, 612, 803, 821
FaqI GGGAC 2 cut(s) 517, 860
FatI CATG 7 cut(s) 328, 525, 535, 551, 608, 799, 817
Fnu4HI GCNGC 8 cut(s) 282, 294, 348, 438, 455, 481, 630, 688
FokI GGATG 1 cut(s) 884
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 8 cut(s) 282, 294, 348, 438, 455, 481, 630, 688
FspBI CTAG 5 cut(s) 434, 566, 600, 633, 779
GlaI GCGC 2 cut(s) 346, 351
GluI GCNGC 8 cut(s) 282, 294, 348, 438, 455, 481, 630, 688
GsuI CTGGAG 1 cut(s) 342
HapII CCGG 3 cut(s) 35, 353, 484
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 347, 352
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 7 cut(s) 332, 529, 539, 555, 612, 803, 821
Hin6I GCGC 2 cut(s) 345, 350
HinP1I GCGC 2 cut(s) 345, 350
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HindIII AAGCTT 3 cut(s) 12, 176, 362
HinfI GANTC 4 cut(s) 69, 273, 392, 557
HpaII CCGG 3 cut(s) 35, 353, 484
HphI GGTGA 3 cut(s) 173, 401, 896
Hpy166II GTNNAC 4 cut(s) 594, 722, 795, 942
Hpy188I TCNGA 3 cut(s) 379, 967, 1011
Hpy188III TCNNGA 7 cut(s) 55, 288, 335, 423, 561, 668, 800
Hpy8I GTNNAC 4 cut(s) 594, 722, 795, 942
HpyAV CCTTC 3 cut(s) 87, 152, 251
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4V TGCA 8 cut(s) 174, 457, 467, 788, 795, 875, 899, 957
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 302, 356, 480
HpyF3I CTNAG 2 cut(s) 360, 747
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 7 cut(s) 332, 529, 539, 555, 612, 803, 821
HspAI GCGC 2 cut(s) 345, 350
KroI GCCGGC 1 cut(s) 483
KroNI GCCGGC 1 cut(s) 485
Kzo9I GATC 4 cut(s) 325, 337, 806, 913
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 2 cut(s) 290, 954
Lsp1109I GCAGC 5 cut(s) 280, 441, 467, 641, 674
LweI GCATC 3 cut(s) 268, 775, 862
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 5 cut(s) 434, 566, 600, 633, 779
MaeIII GTNAC 4 cut(s) 110, 403, 577, 740
MalI GATC 4 cut(s) 327, 339, 808, 915
MboI GATC 4 cut(s) 325, 337, 806, 913
MboII GAAGA 6 cut(s) 17, 20, 206, 274, 481, 845
MfeI CAATTG 2 cut(s) 153, 974
MhlI GDGCHC 2 cut(s) 675, 797
MluCI AATT 8 cut(s) 144, 153, 238, 541, 810, 827, 974, 1015
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 6 cut(s) 117, 562, 619, 875, 902, 976
Mph1103I ATGCAT 1 cut(s) 469
MroNI GCCGGC 1 cut(s) 483
MseI TTAA 3 cut(s) 585, 813, 1028
MslI CAYNNNNRTG 1 cut(s) 524
MspI CCGG 3 cut(s) 35, 353, 484
MspR9I CCNGG 3 cut(s) 129, 201, 354
MteI GCGCNGCGC 1 cut(s) 348
MunI CAATTG 2 cut(s) 153, 974
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 2 cut(s) 129, 201
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 4 cut(s) 290, 302, 356, 480
NaeI GCCGGC 1 cut(s) 485
NciI CCSGG 1 cut(s) 354
NcoI CCATGG 1 cut(s) 608
NdeII GATC 4 cut(s) 325, 337, 806, 913
NgoMIV GCCGGC 1 cut(s) 483
NlaIII CATG 7 cut(s) 332, 529, 539, 555, 612, 803, 821
NmuCI GTSAC 2 cut(s) 577, 740
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 821
PagI TCATGA 1 cut(s) 799
PciI ACATGT 1 cut(s) 817
PciSI GCTCTTC 1 cut(s) 494
PctI GAATGC 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 485
PfeI GAWTC 3 cut(s) 273, 392, 557
PflFI GACNNNGTC 1 cut(s) 773
PflMI CCANNNNNTGG 1 cut(s) 979
PkrI GCNGC 8 cut(s) 283, 295, 349, 439, 456, 482, 631, 689
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 775
PscI ACATGT 1 cut(s) 817
Psp124BI GAGCTC 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 775
Psp6I CCWGG 2 cut(s) 127, 199
PspGI CCWGG 2 cut(s) 127, 199
PspPI GGNCC 2 cut(s) 665, 775
PspPPI RGGWCCY 1 cut(s) 775
PstI CTGCAG 1 cut(s) 459
PstNI CAGNNNCTG 2 cut(s) 293, 407
PsyI GACNNNGTC 1 cut(s) 773
RsaI GTAC 2 cut(s) 251, 728
RsaNI GTAC 2 cut(s) 250, 727
RseI CAYNNNNRTG 1 cut(s) 524
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 3 cut(s) 585, 813, 1028
SatI GCNGC 8 cut(s) 282, 294, 348, 438, 455, 481, 630, 688
Sau3AI GATC 4 cut(s) 325, 337, 806, 913
Sau96I GGNCC 2 cut(s) 665, 775
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 3 cut(s) 129, 201, 354
SduI GDGCHC 2 cut(s) 675, 797
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 3 cut(s) 268, 775, 862
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 2 cut(s) 665, 775
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 8 cut(s) 144, 153, 238, 541, 810, 827, 974, 1015
SsiI CCGC 4 cut(s) 90, 281, 348, 437
SspMI CTAG 5 cut(s) 434, 566, 600, 633, 779
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 3 cut(s) 127, 199, 352
StyI CCWWGG 1 cut(s) 608
TaaI ACNGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 48, 72, 276
TasI AATT 8 cut(s) 144, 153, 238, 541, 810, 827, 974, 1015
TauI GCSGC 3 cut(s) 284, 350, 440
TfiI GAWTC 3 cut(s) 273, 392, 557
Tru1I TTAA 3 cut(s) 585, 813, 1028
Tru9I TTAA 3 cut(s) 585, 813, 1028
TscAI CASTG 3 cut(s) 751, 842, 901
TseFI GTSAC 2 cut(s) 577, 740
TseI GCWGC 5 cut(s) 293, 454, 480, 629, 687
Tsp45I GTSAC 2 cut(s) 577, 740
TspDTI ATGAA 2 cut(s) 34, 524
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 3 cut(s) 751, 842, 901
Tth111I GACNNNGTC 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 979
VneI GTGCAC 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 665, 775
XapI RAATTY 1 cut(s) 827
XceI RCATGY 1 cut(s) 821
XspI CTAG 5 cut(s) 434, 566, 600, 633, 779
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.