Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006808

Physical Location & Seq

Genomic Coordinates Forward (+)

9951593 .. 9954964

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATTAATGTGATGCTGAAACCTGGTTGCGAAGCTCAAATTGAAGCAATTGAAGGTGAAATCAAGTGCAAGCTTGAGAGAGTGGAGTGGTTGCCGGCTTTTATTCTCTTCCCTCAGATGTTCAAATCGCTAATTCAAATGCATTGTGTCTTTGTGGTTGTTTTGGAGTTTCAGATATATGGAATCGATGCGGCGTCAGGAGCTGCTGTTTCAGCATTGGATATTTCAGCTGGAGATCATGTTCTTGATCTTTGCGCTGCGCCGGGTGCTAAGCTTTGTTTGATATCAGACATTCTGGGTGATTCGGGTTCAGTAACTGGCATTGATGTTTCAAGACACCGACTAGCGGCTTGTAGGACGATGCTGCAGAAATATGCATTGGGCAATCGCTGCCGGCTCTTCGTTGCTGATGGGACTACTTTTTCCATCATTCCCATGAGAGTTCATGCCAATTCTAAATCATGTGAATCTGGACTAGAGGAAAATGTGACATTTAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAAGAGGCAGCTAGGATAAGAAAAGGTGGTGCTGTGCTTTCAGGTCCAGAGCTCATCTATTATGGCTGCCAATCTGGTGTTGTTGGGCTAAAGAAAAGTGAACTGTACCGAACTTTTTGTGACACTGAGTTTTTGAGCTGTGGCTATGACAAGGTCCTAGTTGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAAAAATTTGAACACTGGGGTTGGGACACTCTTCAACGCCGTGTATTGGATGCAGAGAGAGGTGATAGCCTCACTGCACTTCAGTTAAAGCTCCTTACGAATGGTTTTAGATTGCTAAAAGCTGGGGGGCTGCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAATGAAGATGTGGTAAAGCAGTTTCTTGAGGAAAACCCTTCTGCGGAGTTGCAGGCGATAGATGCTGCTGAAAATTGGCCTTGCAAGAACGGGCAACTACCGAAAACCCTGCGCTTTGATCCTTTGACTTCAAACACTAGTGGACTGTTTGTTGCAAAGTTTACAAAATTGGCCATTCAATCAAAGTTTGCTAGACATCTTAATGCCCCTTTGCCTTTGGTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

375

Amino Acids

41.45

Weight (kDa)

7.05

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	72 - 140	1.7e-08	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	225 - 354	2.2e-19	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66180 AT5G66180 AT5G66180
fragaria_vesca	FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660
malus_domestica	MD02G1129700.v1.1 MD15G1244000.v1.1
prunus_persica	Prupe.7G169900_v2.0.a1
pyrus_communis	pycom02g10170 pycom15g21490
rosa_chinensis	RchiOBHm_Chr2g0099251
rosa_laevigata	RLG00000016865
rosa_multiflora	Rmu_sc0002025.1_g000004 Rmu_sc0036312.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143280
rosa_rugosa	Rorug02G0078200
rosa_samantha	Rh2AG127400 Rh2BG130400 Rh2CG131600 Rh2DG132000
rosa_wichuraiana	Rw2G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	191, 347, 944
AclWI	GGATC	2 cut(s)	724, 1013
AcoI	YGGCCR	1 cut(s)	1071
AcsI	RAATTY	1 cut(s)	737
AcuI	CTGAAG	1 cut(s)	797
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	3 cut(s)	346, 778, 943
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	9 cut(s)	44, 53, 124, 137, 333, 743, 767, 1032, 1079
AhlI	ACTAGT	1 cut(s)	1037
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AloI	GAACNNNNNNTCC	2 cut(s)	225, 257
Alw21I	GWGCWC	2 cut(s)	585, 707
Alw26I	GTCTC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	703
AlwI	GGATC	2 cut(s)	724, 1013
AlwNI	CAGNNNCTG	2 cut(s)	203, 317
AoxI	GGCC	2 cut(s)	977, 1071
ApaLI	GTGCAC	1 cut(s)	703
ApeKI	GCWGC	8 cut(s)	203, 257, 364, 390, 539, 597, 862, 965
ApoI	RAATTY	1 cut(s)	737
AseI	ATTAAT	1 cut(s)	6
AspLEI	GCGC	3 cut(s)	257, 262, 1014
AspS9I	GGNCC	2 cut(s)	575, 685
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	68, 311, 806
AvaII	GGWCC	2 cut(s)	575, 685
BaeGI	GKGCMC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	1073
BanII	GRGCYC	1 cut(s)	585
Bbv12I	GWGCWC	2 cut(s)	585, 707
BbvI	GCAGC	8 cut(s)	190, 244, 351, 377, 551, 584, 849, 952
BccI	CCATC	3 cut(s)	404, 434, 707
BceAI	ACGGC	1 cut(s)	756
BcgI	CGANNNNNNTGC	2 cut(s)	991, 1025
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	508
BcuI	ACTAGT	1 cut(s)	1037
BfaI	CTAG	7 cut(s)	344, 476, 510, 543, 689, 1038, 1092
BfmI	CTRYAG	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	24, 264
Bme18I	GGWCC	2 cut(s)	575, 685
BmgT120I	GGNCC	2 cut(s)	575, 685
BmrFI	CCNGG	2 cut(s)	24, 264
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	6 cut(s)	3, 178, 351, 685, 772, 952
BmuI	ACTGGG	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	95, 947
BpuMI	CCSGG	1 cut(s)	264
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 225, 255
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 778, 943
Bse118I	RCCGGY	2 cut(s)	94, 393
Bse1I	ACTGG	2 cut(s)	322, 752
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	3 cut(s)	346, 778, 943
BseMII	CTCAG	3 cut(s)	128, 648, 911
BseNI	ACTGG	2 cut(s)	322, 752
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	8 cut(s)	190, 244, 351, 377, 551, 584, 849, 952
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	792
BshFI	GGCC	2 cut(s)	979, 1073
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	585, 707
BsiSI	CCGG	3 cut(s)	95, 263, 394
BslFI	GGGAC	2 cut(s)	427, 770
BslI	CCNNNNNNNGG	3 cut(s)	346, 778, 943
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	427, 770
BsnI	GGCC	2 cut(s)	979, 1073
Bso31I	GGTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	585, 707
Bsp143I	GATC	4 cut(s)	235, 247, 716, 1018
Bsp1720I	GCTNAGC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	518
BspACI	CCGC	3 cut(s)	191, 347, 944
BspANI	GGCC	2 cut(s)	979, 1073
BspCNI	CTCAG	3 cut(s)	127, 649, 910
BspDI	ATCGAT	1 cut(s)	186
BspHI	TCATGA	1 cut(s)	709
BspMAI	CTGCAG	1 cut(s)	369
BspPI	GGATC	2 cut(s)	724, 1013
BspQI	GCTCTTC	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	508
BsrFI	RCCGGY	2 cut(s)	94, 393
BsrI	ACTGG	2 cut(s)	322, 752
BssAI	RCCGGY	2 cut(s)	94, 393
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	4 cut(s)	235, 247, 716, 1018
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	636, 892, 1047
Bst6I	CTCTTC	3 cut(s)	113, 404, 768
BstACI	GRCGYC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	71, 96, 395, 954
BstDEI	CTNAG	4 cut(s)	114, 270, 657, 897
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	787
BstHHI	GCGC	3 cut(s)	257, 262, 1014
BstKTI	GATC	4 cut(s)	238, 250, 719, 1021
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	235, 247, 716, 1018
BstMWI	GCNNNNNNNGC	5 cut(s)	200, 212, 266, 390, 962
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	22, 262
BstSFI	CTRYAG	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	707
BstV1I	GCAGC	8 cut(s)	190, 244, 351, 377, 551, 584, 849, 952
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	979, 1073
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	787
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	654, 745, 804
Cac8I	GCNNGC	4 cut(s)	71, 96, 395, 954
CaiI	CAGNNNCTG	2 cut(s)	203, 317
CciI	TCATGA	1 cut(s)	709
CfoI	GCGC	3 cut(s)	257, 262, 1014
Cfr10I	RCCGGY	2 cut(s)	94, 393
Cfr13I	GGNCC	2 cut(s)	575, 685
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	7 cut(s)	239, 436, 446, 462, 519, 710, 728
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	4 cut(s)	114, 270, 657, 897
DpnI	GATC	4 cut(s)	237, 249, 718, 1020
DpnII	GATC	4 cut(s)	235, 247, 716, 1018
EaeI	YGGCCR	1 cut(s)	1071
Eam1104I	CTCTTC	3 cut(s)	113, 404, 768
EarI	CTCTTC	3 cut(s)	113, 404, 768
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	585
Eco31I	GGTCTC	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	575, 685
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	797
EcoICRI	GAGCTC	1 cut(s)	583
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	518
EcoT22I	ATGCAT	2 cut(s)	144, 379
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	7 cut(s)	242, 439, 449, 465, 522, 713, 731
FaqI	GGGAC	2 cut(s)	427, 770
FatI	CATG	7 cut(s)	238, 435, 445, 461, 518, 709, 727
FokI	GGATG	1 cut(s)	794
FriOI	GRGCYC	1 cut(s)	585
FspBI	CTAG	7 cut(s)	344, 476, 510, 543, 689, 1038, 1092
GlaI	GCGC	3 cut(s)	256, 261, 1013
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	979, 1073
HapII	CCGG	3 cut(s)	95, 263, 394
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	3 cut(s)	257, 262, 1014
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	7 cut(s)	242, 439, 449, 465, 522, 713, 731
Hin6I	GCGC	3 cut(s)	255, 260, 1012
HinP1I	GCGC	3 cut(s)	255, 260, 1012
HindIII	AAGCTT	2 cut(s)	71, 272
HinfI	GANTC	3 cut(s)	183, 302, 467
HpaII	CCGG	3 cut(s)	95, 263, 394
HphI	GGTGA	3 cut(s)	68, 311, 806
Hpy166II	GTNNAC	5 cut(s)	504, 632, 705, 1043, 1062
Hpy188I	TCNGA	4 cut(s)	117, 174, 289, 900
Hpy188III	TCNNGA	7 cut(s)	198, 245, 333, 471, 578, 710, 926
Hpy8I	GTNNAC	5 cut(s)	504, 632, 705, 1043, 1062
HpyAV	CCTTC	2 cut(s)	47, 948
HpyCH4III	ACNGT	3 cut(s)	636, 892, 1047
HpyF10VI	GCNNNNNNNGC	5 cut(s)	200, 212, 266, 390, 962
HpyF3I	CTNAG	4 cut(s)	114, 270, 657, 897
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	7 cut(s)	242, 439, 449, 465, 522, 713, 731
HspAI	GCGC	3 cut(s)	255, 260, 1012
KroI	GCCGGC	2 cut(s)	94, 393
KroNI	GCCGGC	2 cut(s)	96, 395
Kzo9I	GATC	4 cut(s)	235, 247, 716, 1018
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	2 cut(s)	200, 828
Lsp1109I	GCAGC	8 cut(s)	190, 244, 351, 377, 551, 584, 849, 952
LweI	GCATC	6 cut(s)	3, 178, 351, 685, 772, 952
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	7 cut(s)	344, 476, 510, 543, 689, 1038, 1092
MaeIII	GTNAC	3 cut(s)	313, 487, 650
MalI	GATC	4 cut(s)	237, 249, 718, 1020
MboI	GATC	4 cut(s)	235, 247, 716, 1018
MboII	GAAGA	4 cut(s)	100, 391, 755, 917
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	585, 707
MlsI	TGGCCA	1 cut(s)	1073
MluCI	AATT	8 cut(s)	39, 48, 132, 451, 720, 737, 973, 1067
MluNI	TGGCCA	1 cut(s)	1073
MnlI	CCTC	6 cut(s)	123, 472, 529, 785, 812, 922
Mox20I	TGGCCA	1 cut(s)	1073
Mph1103I	ATGCAT	2 cut(s)	144, 379
MroNI	GCCGGC	2 cut(s)	94, 393
MscI	TGGCCA	1 cut(s)	1073
MseI	TTAA	6 cut(s)	6, 495, 723, 818, 1101, 1126
MslI	CAYNNNNRTG	2 cut(s)	434, 1101
Msp20I	TGGCCA	1 cut(s)	1073
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	3 cut(s)	95, 263, 394
MspR9I	CCNGG	2 cut(s)	24, 264
MteI	GCGCNGCGC	1 cut(s)	258
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	200, 212, 266, 390, 962
NaeI	GCCGGC	2 cut(s)	96, 395
NciI	CCSGG	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	518
NdeII	GATC	4 cut(s)	235, 247, 716, 1018
NgoMIV	GCCGGC	2 cut(s)	94, 393
NlaIII	CATG	7 cut(s)	242, 439, 449, 465, 522, 713, 731
NmuCI	GTSAC	2 cut(s)	487, 650
NsiI	ATGCAT	2 cut(s)	144, 379
NspI	RCATGY	1 cut(s)	731
PagI	TCATGA	1 cut(s)	709
PciI	ACATGT	1 cut(s)	727
PciSI	GCTCTTC	1 cut(s)	404
PdiI	GCCGGC	2 cut(s)	96, 395
PfeI	GAWTC	3 cut(s)	183, 302, 467
PflFI	GACNNNGTC	1 cut(s)	683
PpuMI	RGGWCCY	1 cut(s)	685
PscI	ACATGT	1 cut(s)	727
PshBI	ATTAAT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	575, 685
PspPPI	RGGWCCY	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	2 cut(s)	203, 317
PsyI	GACNNNGTC	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	2 cut(s)	434, 1101
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	6 cut(s)	6, 495, 723, 818, 1101, 1126
Sau3AI	GATC	4 cut(s)	235, 247, 716, 1018
Sau96I	GGNCC	2 cut(s)	575, 685
ScrFI	CCNGG	2 cut(s)	24, 264
SduI	GDGCHC	2 cut(s)	585, 707
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	6 cut(s)	3, 178, 351, 685, 772, 952
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	2 cut(s)	575, 685
SmiMI	CAYNNNNRTG	2 cut(s)	434, 1101
SmlI	CTYRAG	2 cut(s)	74, 926
SmoI	CTYRAG	2 cut(s)	74, 926
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	8 cut(s)	39, 48, 132, 451, 720, 737, 973, 1067
SsiI	CCGC	3 cut(s)	191, 347, 944
SspMI	CTAG	7 cut(s)	344, 476, 510, 543, 689, 1038, 1092
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	22, 262
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	636, 892, 1047
TaqI	TCGA	1 cut(s)	186
TasI	AATT	8 cut(s)	39, 48, 132, 451, 720, 737, 973, 1067
TauI	GCSGC	2 cut(s)	194, 350
TfiI	GAWTC	3 cut(s)	183, 302, 467
Tru1I	TTAA	6 cut(s)	6, 495, 723, 818, 1101, 1126
Tru9I	TTAA	6 cut(s)	6, 495, 723, 818, 1101, 1126
TscAI	CASTG	3 cut(s)	661, 752, 811
TseFI	GTSAC	2 cut(s)	487, 650
TseI	GCWGC	8 cut(s)	203, 257, 364, 390, 539, 597, 862, 965
Tsp45I	GTSAC	2 cut(s)	487, 650
TspDTI	ATGAA	2 cut(s)	434, 918
TspRI	CASTG	3 cut(s)	661, 752, 811
Tth111I	GACNNNGTC	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	703
VpaK11BI	GGWCC	2 cut(s)	575, 685
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	737
XceI	RCATGY	1 cut(s)	731
XspI	CTAG	7 cut(s)	344, 476, 510, 543, 689, 1038, 1092
Zsp2I	ATGCAT	2 cut(s)	144, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.