Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006808

Physical Location & Seq

Genomic Coordinates Reverse (-)

81283471 .. 81286702

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAAGAAGAAGTAGAAGAAGCTTCAAACTCATCGGCGTTGCCGGAAGCCTTCCTCGATTTCCTGAAACACAACGGACTCGACCCTTCCATCTACACCGCCTGCCACTCCACCCCTCGTTACATAAGGCTGAAACCTGGTTGCGAAGCTCAAATTGAAGCAATTGAAGGTGAAATCAAGTGCAAGCTTGAGAGAGTGGAGTGGTTGCGTGGCTTTTACTCTCTTCCCCCAAATGTTCAAATCGCTAATTCAAATGCCTACAGAGATGGGAAGATATATGGAATCGATGCGGCGTCAGGAGCTGCTGTTTCAGCATTGGATATTTCAGCTGGAGATCATGTTCTTGATCTTTGCGCCGCGCCGGGTGCTAAGCTTTGTTTGATATCAGACATTCTGGGTGATTCGGGTTCAGTAACTGGCGTTGATGTTTCAAGACACCGACTAGCGGCTTGTAGGACAATGCTGCAGAAATATGCATTGGGCAATCGCTGCCGGCTCTTCGTTGCTGATGGAACTACTTTTTCCATCATTCCCATGAGAGTTCATGCCAATTCTAAATCATGTGAATCTGGACTACAGGAAAATGTGACATTTAAGGAGTGGACATCTAGGAGACCATGGAAAGAAAGGAAAGAGGCAGCTAGGATAAGAAAAGGTGGTGCTGTGCTTTCAGGTCCAGTGCTCATCTATTATGGCTGCCAATCTGGTGTTGTCGGGCTAAAGAAAAGTGAACTGTACCGAACTTTTTGCGACACTGAGTTTTTGAGCTGTGGCTATGACAAGGTCCTAGTTGATGCAGAGTGCACTCATGATGGATCCATTAAACATGTCCAAAAATTTGAACACTGGGGTTGGGACACTCTTCAACGCCGTGTATTGGATGCAGAGAGAGGTGATAGCCTCACTGCACTTCAGTTAAAGCTCCTTATGAATGGTTTTAGATTGCTAAAAGCTGGGGGGCTGCTTGTTTATAGCACTTGCAGTTTGACAGTTGCTCAGAATGAAGATGTGGTAAAGCAGTTTCTTGAGGAAAACCCTTGTGCGGAGTTGCAGGCGATAGATGCTGCTGAAAATTGGCCTTGCAAGAACGGGCGACTACCGAAAACCCTGCGCTTTGATCCTTTGACTTCAAACACTAGTGGACTGTTTGTTGCAAAGTTTACAAAATTGGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

392

Amino Acids

43.21

Weight (kDa)

6.71

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltr_RsmB-F	PF01189	105 - 173	1.2e-08	16S rRNA methyltransferase RsmB/F
Methyltr_RsmB-F	PF01189	258 - 387	1.7e-18	16S rRNA methyltransferase RsmB/F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66180 AT5G66180 AT5G66180
fragaria_vesca	FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660
malus_domestica	MD02G1129700.v1.1 MD15G1244000.v1.1
prunus_persica	Prupe.7G169900_v2.0.a1
pyrus_communis	pycom02g10170 pycom15g21490
rosa_chinensis	RchiOBHm_Chr2g0099251
rosa_laevigata	RLG00000016865
rosa_multiflora	Rmu_sc0002025.1_g000004 Rmu_sc0036312.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143280
rosa_rugosa	Rorug02G0078200
rosa_samantha	Rh2AG127400 Rh2BG130400 Rh2CG131600 Rh2DG132000
rosa_wichuraiana	Rw2G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	359
AciI	CCGC	5 cut(s)	99, 290, 357, 446, 1043
AclWI	GGATC	3 cut(s)	810, 823, 1112
AcoI	YGGCCR	1 cut(s)	1170
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	896
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	3 cut(s)	445, 877, 1042
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	9 cut(s)	27, 158, 167, 239, 252, 432, 842, 866, 1131
AhlI	ACTAGT	1 cut(s)	1136
AjnI	CCWGG	1 cut(s)	136
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
Alw21I	GWGCWC	2 cut(s)	684, 806
Alw26I	GTCTC	1 cut(s)	607
Alw44I	GTGCAC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	810, 823, 1112
AlwNI	CAGNNNCTG	2 cut(s)	302, 416
AoxI	GGCC	2 cut(s)	1076, 1170
ApaLI	GTGCAC	1 cut(s)	802
ApeKI	GCWGC	7 cut(s)	302, 463, 489, 638, 696, 961, 1064
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	3 cut(s)	356, 361, 1113
AspS9I	GGNCC	2 cut(s)	674, 784
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	182, 410, 905
AvaII	GGWCC	2 cut(s)	674, 784
BaeGI	GKGCMC	1 cut(s)	806
BalI	TGGCCA	1 cut(s)	1172
BamHI	GGATCC	1 cut(s)	815
Bbv12I	GWGCWC	2 cut(s)	684, 806
BbvI	GCAGC	7 cut(s)	289, 450, 476, 650, 683, 948, 1051
BccI	CCATC	5 cut(s)	98, 260, 503, 533, 806
BceAI	ACGGC	1 cut(s)	855
BcgI	CGANNNNNNTGC	4 cut(s)	729, 763, 1090, 1124
BciT130I	CCWGG	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	607
BcuI	ACTAGT	1 cut(s)	1136
BfaI	CTAG	5 cut(s)	443, 609, 642, 788, 1137
BfmI	CTRYAG	3 cut(s)	259, 464, 575
BlpI	GCTNAGC	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	138, 363
Bme18I	GGWCC	2 cut(s)	674, 784
BmgT120I	GGNCC	2 cut(s)	674, 784
BmiI	GGNNCC	1 cut(s)	817
BmrFI	CCNGG	2 cut(s)	138, 363
BmrI	ACTGGG	1 cut(s)	856
BmsI	GCATC	4 cut(s)	277, 784, 871, 1051
BmuI	ACTGGG	1 cut(s)	856
BpmI	CTGGAG	1 cut(s)	351
Bpu1102I	GCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	209, 1046
BpuMI	CCSGG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 324, 354
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 877, 1042
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	3 cut(s)	421, 677, 851
BseBI	CCWGG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	886
BseLI	CCNNNNNNNGG	3 cut(s)	445, 877, 1042
BseMII	CTCAG	2 cut(s)	747, 1010
BseNI	ACTGG	3 cut(s)	421, 677, 851
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	7 cut(s)	289, 450, 476, 650, 683, 948, 1051
BseYI	CCCAGC	1 cut(s)	953
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	1078, 1172
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	2 cut(s)	684, 806
BsiSI	CCGG	3 cut(s)	44, 362, 493
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	3 cut(s)	445, 877, 1042
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	869
BsnI	GGCC	2 cut(s)	1078, 1172
Bso31I	GGTCTC	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	684, 806
Bsp143I	GATC	4 cut(s)	334, 346, 815, 1117
Bsp1720I	GCTNAGC	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	617
BspACI	CCGC	5 cut(s)	99, 290, 357, 446, 1043
BspANI	GGCC	2 cut(s)	1078, 1172
BspCNI	CTCAG	2 cut(s)	748, 1009
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	1 cut(s)	817
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	3 cut(s)	810, 823, 1112
BspQI	GCTCTTC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	3 cut(s)	421, 677, 851
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	4 cut(s)	334, 346, 815, 1117
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	617
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	735, 991, 1146
Bst6I	CTCTTC	3 cut(s)	228, 503, 867
BstACI	GRCGYC	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstC8I	GCNNGC	4 cut(s)	103, 185, 494, 1053
BstDEI	CTNAG	3 cut(s)	369, 756, 996
BstDSI	CCRYGG	1 cut(s)	617
BstF5I	GGATG	1 cut(s)	886
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	356, 361, 1113
BstKTI	GATC	4 cut(s)	337, 349, 818, 1120
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	4 cut(s)	334, 346, 815, 1117
BstMWI	GCNNNNNNNGC	5 cut(s)	299, 311, 365, 489, 1061
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	2 cut(s)	136, 361
BstSFI	CTRYAG	3 cut(s)	259, 464, 575
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	7 cut(s)	289, 450, 476, 650, 683, 948, 1051
BstX2I	RGATCY	1 cut(s)	815
BstYI	RGATCY	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	2 cut(s)	1078, 1172
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	4 cut(s)	684, 753, 844, 903
Cac8I	GCNNGC	4 cut(s)	103, 185, 494, 1053
CaiI	CAGNNNCTG	2 cut(s)	302, 416
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	3 cut(s)	356, 361, 1113
Cfr10I	RCCGGY	1 cut(s)	492
Cfr13I	GGNCC	2 cut(s)	674, 784
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	7 cut(s)	338, 535, 545, 561, 618, 809, 827
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	3 cut(s)	369, 756, 996
DpnI	GATC	4 cut(s)	336, 348, 817, 1119
DpnII	GATC	4 cut(s)	334, 346, 815, 1117
EaeI	YGGCCR	1 cut(s)	1170
Eam1104I	CTCTTC	3 cut(s)	228, 503, 867
EarI	CTCTTC	3 cut(s)	228, 503, 867
Eco130I	CCWWGG	1 cut(s)	617
Eco31I	GGTCTC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	674, 784
Eco57I	CTGAAG	1 cut(s)	896
EcoO109I	RGGNCCY	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	617
EcoT22I	ATGCAT	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	617
FaeI	CATG	7 cut(s)	341, 538, 548, 564, 621, 812, 830
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	7 cut(s)	337, 534, 544, 560, 617, 808, 826
FokI	GGATG	1 cut(s)	893
FspBI	CTAG	5 cut(s)	443, 609, 642, 788, 1137
GlaI	GCGC	3 cut(s)	355, 360, 1112
GsaI	CCCAGC	1 cut(s)	957
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	1078, 1172
HapII	CCGG	3 cut(s)	44, 362, 493
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	3 cut(s)	356, 361, 1113
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	7 cut(s)	341, 538, 548, 564, 621, 812, 830
Hin6I	GCGC	3 cut(s)	354, 359, 1111
HinP1I	GCGC	3 cut(s)	354, 359, 1111
HindIII	AAGCTT	3 cut(s)	21, 185, 371
HinfI	GANTC	4 cut(s)	78, 282, 401, 566
HpaII	CCGG	3 cut(s)	44, 362, 493
HphI	GGTGA	3 cut(s)	182, 410, 905
Hpy166II	GTNNAC	5 cut(s)	603, 731, 804, 1142, 1161
Hpy188I	TCNGA	2 cut(s)	388, 999
Hpy188III	TCNNGA	7 cut(s)	64, 297, 344, 432, 570, 809, 1025
Hpy8I	GTNNAC	5 cut(s)	603, 731, 804, 1142, 1161
HpyAV	CCTTC	3 cut(s)	61, 96, 161
HpyCH4III	ACNGT	3 cut(s)	735, 991, 1146
HpyF10VI	GCNNNNNNNGC	5 cut(s)	299, 311, 365, 489, 1061
HpyF3I	CTNAG	3 cut(s)	369, 756, 996
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	7 cut(s)	341, 538, 548, 564, 621, 812, 830
HspAI	GCGC	3 cut(s)	354, 359, 1111
KroI	GCCGGC	1 cut(s)	492
KroNI	GCCGGC	1 cut(s)	494
Kzo9I	GATC	4 cut(s)	334, 346, 815, 1117
LguI	GCTCTTC	1 cut(s)	503
LmnI	GCTCC	2 cut(s)	299, 927
Lsp1109I	GCAGC	7 cut(s)	289, 450, 476, 650, 683, 948, 1051
LweI	GCATC	4 cut(s)	277, 784, 871, 1051
MabI	ACCWGGT	1 cut(s)	136
MaeI	CTAG	5 cut(s)	443, 609, 642, 788, 1137
MaeIII	GTNAC	3 cut(s)	119, 412, 586
MalI	GATC	4 cut(s)	336, 348, 817, 1119
MboI	GATC	4 cut(s)	334, 346, 815, 1117
MboII	GAAGA	8 cut(s)	17, 20, 29, 215, 283, 490, 854, 1016
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	2 cut(s)	684, 806
MlsI	TGGCCA	1 cut(s)	1172
MluCI	AATT	7 cut(s)	153, 162, 247, 550, 836, 1072, 1166
MluNI	TGGCCA	1 cut(s)	1172
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	65, 126, 628, 884, 911, 1021
Mox20I	TGGCCA	1 cut(s)	1172
Mph1103I	ATGCAT	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	1172
MseI	TTAA	4 cut(s)	594, 822, 917, 1177
MslI	CAYNNNNRTG	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	1172
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	44, 362, 493
MspR9I	CCNGG	2 cut(s)	138, 363
MteI	GCGCNGCGC	1 cut(s)	357
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	5 cut(s)	299, 311, 365, 489, 1061
NaeI	GCCGGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	363
NcoI	CCATGG	1 cut(s)	617
NdeII	GATC	4 cut(s)	334, 346, 815, 1117
NgoMIV	GCCGGC	1 cut(s)	492
NlaIII	CATG	7 cut(s)	341, 538, 548, 564, 621, 812, 830
NlaIV	GGNNCC	1 cut(s)	817
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	830
PagI	TCATGA	1 cut(s)	808
PciI	ACATGT	1 cut(s)	826
PciSI	GCTCTTC	1 cut(s)	503
PdiI	GCCGGC	1 cut(s)	494
PfeI	GAWTC	3 cut(s)	282, 401, 566
PflFI	GACNNNGTC	1 cut(s)	782
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	784
PscI	ACATGT	1 cut(s)	826
Psp5II	RGGWCCY	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	817
PspPI	GGNCC	2 cut(s)	674, 784
PspPPI	RGGWCCY	1 cut(s)	784
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	2 cut(s)	302, 416
PsuI	RGATCY	1 cut(s)	815
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	594, 822, 917, 1177
Sau3AI	GATC	4 cut(s)	334, 346, 815, 1117
Sau96I	GGNCC	2 cut(s)	674, 784
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	138, 363
SduI	GDGCHC	2 cut(s)	684, 806
SexAI	ACCWGGT	1 cut(s)	136
SfaNI	GCATC	4 cut(s)	277, 784, 871, 1051
SfcI	CTRYAG	3 cut(s)	259, 464, 575
SinI	GGWCC	2 cut(s)	674, 784
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	188, 1025
SmoI	CTYRAG	2 cut(s)	188, 1025
SpeI	ACTAGT	1 cut(s)	1136
Sse9I	AATT	7 cut(s)	153, 162, 247, 550, 836, 1072, 1166
SsiI	CCGC	5 cut(s)	99, 290, 357, 446, 1043
SspMI	CTAG	5 cut(s)	443, 609, 642, 788, 1137
StyD4I	CCNGG	2 cut(s)	136, 361
StyI	CCWWGG	1 cut(s)	617
TaaI	ACNGT	3 cut(s)	735, 991, 1146
TaqI	TCGA	3 cut(s)	57, 81, 285
TasI	AATT	7 cut(s)	153, 162, 247, 550, 836, 1072, 1166
TauI	GCSGC	3 cut(s)	293, 359, 449
TfiI	GAWTC	3 cut(s)	282, 401, 566
Tru1I	TTAA	4 cut(s)	594, 822, 917, 1177
Tru9I	TTAA	4 cut(s)	594, 822, 917, 1177
TscAI	CASTG	4 cut(s)	684, 760, 851, 910
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	7 cut(s)	302, 463, 489, 638, 696, 961, 1064
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	533, 944, 1017
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	4 cut(s)	684, 760, 851, 910
Tth111I	GACNNNGTC	1 cut(s)	782
VneI	GTGCAC	1 cut(s)	802
VpaK11BI	GGWCC	2 cut(s)	674, 784
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	5 cut(s)	443, 609, 642, 788, 1137
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.