Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006808

Physical Location & Seq

Genomic Coordinates Reverse (-)

17218582 .. 17221607

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G169900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAAGAAGAAGCTTCGAACGCAGCGTTGCCAGACGGCTTCCTCGATTTTCTGAAAGCAAATGGTTTAGACCCTTCCATTTATGCCGAGAGCAATTCGACCCCTCGTTACATAAGGTTAAAGCCTGGTTGCGAAGCTCAAATTGAAGAAATTGAAGGTGAAATCAAGTGCAAGCTTGAAAAAGTGGGTTGGCTGCCTGGCTTTTATGCGCTTCCTCCCGACGTTCAAATCGCAAACTCAAATGCATACAGAGAAGGGAAGATGTATGGAATCGATGCGGCGTCTGGAGCTGCTGTTTCAGCATTGAATATCTCAGCTGGAGATCATGTTCTTGATCTTTGTGCTGCTCCTGGTGCTAAGCTTTGTCTGATGTTGGACATTCTTGGTGATTCTGGTTCTGTAACTGGTGTTGATGTTTCAAGCCATCGTTTAGCGGCTTGTAGGACAATGTTGCAGAAATATGCATTGGGCAATCGCTGCCGACTATTTGTTGCTGATGGGACAACCTTTTCCCTCATGCCCATGAGAATTCATTCTGATCCAAAATCATGTGAATCTGCTTTGGAAGAAAATGTGACATTCAAGGAGTGGACATCTCGGAGACCATGGAAAGAAAGGAAAAAAGCAGCTAGGGTAAGAAAAAGTGGTGCTGTGCATTCAGGAAATCAACTTCCAGAGCTCATTTATTATGGTCGCCACTCTGGTGTGGTTGGACGGAATAAAAGTGAATTGTACCAAACATTTCGTGACAGCGAGCTTTTGAGCTGTGGCTATGACAAGGTCCTAGTGGATGCAGAGTGCACTCATGATGGATCAATTAAACATGTCCAAAAGTTTGAACATTGGGGATGGGAAACTCTTCAACGACGTGTATTGGATGCAGAGAGAAGTGATAGCCTCACTGTGCTTCAGTTAAAGCTCCTAACCAATGGTTTTAGATTGCTAAAAGCTGGGGGACTTCTTGTTTATAGCACTTGCAGCTTGACAGTTGCTCAGAATGAAGACATTGTAAAGCAGTTTCTTGAGGAAAATCCGTTTGCTGAGTTGCAGGCGATAGATGGTGTTGAAAATTGGCCAAGCAAGAGCGGACAACTACCAAATACCCTGCGCTTTGATCCCTTGACTTCAAAAACTAGTGGACTTTTTGTTGCAAAGTTCTCAAAATTGGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

392

Amino Acids

43.13

Weight (kDa)

6.28

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66180 AT5G66180 AT5G66180
fragaria_vesca	FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660
malus_domestica	MD02G1129700.v1.1 MD15G1244000.v1.1
prunus_persica	Prupe.7G169900_v2.0.a1
pyrus_communis	pycom02g10170 pycom15g21490
rosa_chinensis	RchiOBHm_Chr2g0099251
rosa_laevigata	RLG00000016865
rosa_multiflora	Rmu_sc0002025.1_g000004 Rmu_sc0036312.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143280
rosa_rugosa	Rorug02G0078200
rosa_samantha	Rh2AG127400 Rh2BG130400 Rh2CG131600 Rh2DG132000
rosa_wichuraiana	Rw2G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1086
AciI	CCGC	3 cut(s)	278, 434, 1086
AclWI	GGATC	3 cut(s)	533, 820, 1109
AcoI	YGGCCR	2 cut(s)	1073, 1167
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	893
AcyI	GRCGYC	1 cut(s)	281
AfaI	GTAC	1 cut(s)	734
AflIII	ACRYGT	2 cut(s)	823, 868
AhlI	ACTAGT	1 cut(s)	1133
AjiI	CACGTC	1 cut(s)	869
AjnI	CCWGG	3 cut(s)	124, 196, 349
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AleI	CACNNNNGTG	1 cut(s)	702
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
Alw21I	GWGCWC	2 cut(s)	681, 803
Alw26I	GTCTC	1 cut(s)	595
Alw44I	GTGCAC	1 cut(s)	799
AlwI	GGATC	3 cut(s)	533, 820, 1109
AoxI	GGCC	2 cut(s)	1073, 1167
ApaLI	GTGCAC	1 cut(s)	799
ApeKI	GCWGC	7 cut(s)	23, 193, 290, 344, 477, 626, 978
ApoI	RAATTY	1 cut(s)	528
Asp700I	GAANNNNTTC	2 cut(s)	532, 858
AspLEI	GCGC	2 cut(s)	211, 1110
AspS9I	GGNCC	1 cut(s)	781
AsuHPI	GGTGA	2 cut(s)	170, 398
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	803
BalI	TGGCCA	2 cut(s)	1075, 1169
BanII	GRGCYC	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	1008
Bbv12I	GWGCWC	2 cut(s)	681, 803
BbvI	GCAGC	7 cut(s)	35, 180, 277, 331, 464, 638, 990
BccI	CCATC	5 cut(s)	432, 491, 803, 843, 1052
BceAI	ACGGC	1 cut(s)	52
BciT130I	CCWGG	3 cut(s)	126, 198, 351
BcoDI	GTCTC	1 cut(s)	595
BcuI	ACTAGT	1 cut(s)	1133
BfaI	CTAG	3 cut(s)	630, 785, 1134
BisI	GCNGC	9 cut(s)	24, 194, 279, 291, 345, 435, 478, 627, 979
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	9 cut(s)	25, 195, 280, 292, 346, 436, 479, 628, 980
Bme1390I	CCNGG	3 cut(s)	126, 198, 351
Bme18I	GGWCC	1 cut(s)	781
BmgBI	CACGTC	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	781
BmrFI	CCNGG	3 cut(s)	126, 198, 351
BmsI	GCATC	3 cut(s)	265, 781, 868
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	2 cut(s)	306, 339
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	1043
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	1 cut(s)	605
BsaXI	ACNNNNNCTCC	4 cut(s)	279, 309, 312, 342
Bse1I	ACTGG	1 cut(s)	409
BseBI	CCWGG	3 cut(s)	126, 198, 351
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	796, 854, 883
BseMII	CTCAG	3 cut(s)	327, 1007, 1032
BseNI	ACTGG	1 cut(s)	409
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	7 cut(s)	35, 180, 277, 331, 464, 638, 990
BseYI	CCCAGC	1 cut(s)	950
BshFI	GGCC	2 cut(s)	1075, 1169
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	681, 803
BslFI	GGGAC	2 cut(s)	514, 969
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	2 cut(s)	514, 969
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	2 cut(s)	1075, 1169
Bso31I	GGTCTC	1 cut(s)	595
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	681, 803
Bsp143I	GATC	5 cut(s)	322, 334, 538, 812, 1114
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	3 cut(s)	278, 434, 1086
BspANI	GGCC	2 cut(s)	1075, 1169
BspCNI	CTCAG	3 cut(s)	326, 1006, 1033
BspDI	ATCGAT	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	805
BspPI	GGATC	3 cut(s)	533, 820, 1109
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	595
BsrBI	CCGCTC	1 cut(s)	1086
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	5 cut(s)	322, 334, 538, 812, 1114
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	3 cut(s)	126, 198, 351
Bst4CI	ACNGT	2 cut(s)	904, 988
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	173, 755, 1050
BstDEI	CTNAG	4 cut(s)	313, 357, 993, 1041
BstDSI	CCRYGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	796, 854, 883
BstHHI	GCGC	2 cut(s)	211, 1110
BstKTI	GATC	5 cut(s)	325, 337, 541, 815, 1117
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	5 cut(s)	322, 334, 538, 812, 1114
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 287, 299, 353, 477, 978
BstNI	CCWGG	3 cut(s)	126, 198, 351
BstNSI	RCATGY	1 cut(s)	827
BstSCI	CCNGG	3 cut(s)	124, 196, 349
BstSLI	GKGCMC	1 cut(s)	803
BstV1I	GCAGC	7 cut(s)	35, 180, 277, 331, 464, 638, 990
BstV2I	GAAGAC	1 cut(s)	1008
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	1075, 1169
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	605
BtrI	CACGTC	1 cut(s)	869
BtsCI	GGATG	3 cut(s)	796, 854, 883
BtsIMutI	CAGTG	1 cut(s)	900
Cac8I	GCNNGC	3 cut(s)	173, 755, 1050
CciI	TCATGA	1 cut(s)	805
CfoI	GCGC	2 cut(s)	211, 1110
Cfr13I	GGNCC	1 cut(s)	781
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	733
CviAII	CATG	7 cut(s)	326, 517, 523, 549, 606, 806, 824
CviQI	GTAC	1 cut(s)	733
DdeI	CTNAG	4 cut(s)	313, 357, 993, 1041
DpnI	GATC	5 cut(s)	324, 336, 540, 814, 1116
DpnII	GATC	5 cut(s)	322, 334, 538, 812, 1114
EaeI	YGGCCR	2 cut(s)	1073, 1167
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	781
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	679
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRI	GAATTC	1 cut(s)	528
EcoRII	CCWGG	3 cut(s)	124, 196, 349
EcoT14I	CCWWGG	1 cut(s)	605
EcoT22I	ATGCAT	2 cut(s)	247, 466
EcoT38I	GRGCYC	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	7 cut(s)	329, 520, 526, 552, 609, 809, 827
FaqI	GGGAC	2 cut(s)	514, 969
FatI	CATG	7 cut(s)	325, 516, 522, 548, 605, 805, 823
Fnu4HI	GCNGC	9 cut(s)	24, 194, 279, 291, 345, 435, 478, 627, 979
FokI	GGATG	3 cut(s)	803, 861, 890
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	9 cut(s)	24, 194, 279, 291, 345, 435, 478, 627, 979
FspBI	CTAG	3 cut(s)	630, 785, 1134
GlaI	GCGC	2 cut(s)	210, 1109
GluI	GCNGC	9 cut(s)	24, 194, 279, 291, 345, 435, 478, 627, 979
GsaI	CCCAGC	1 cut(s)	954
GsuI	CTGGAG	2 cut(s)	306, 339
HaeIII	GGCC	2 cut(s)	1075, 1169
HgaI	GACGC	1 cut(s)	270
HhaI	GCGC	2 cut(s)	211, 1110
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	7 cut(s)	329, 520, 526, 552, 609, 809, 827
Hin6I	GCGC	2 cut(s)	209, 1108
HinP1I	GCGC	2 cut(s)	209, 1108
HindIII	AAGCTT	3 cut(s)	12, 173, 359
HinfI	GANTC	3 cut(s)	270, 389, 554
HphI	GGTGA	2 cut(s)	170, 398
Hpy166II	GTNNAC	3 cut(s)	591, 801, 1139
Hpy188I	TCNGA	5 cut(s)	54, 369, 538, 600, 996
Hpy188III	TCNNGA	8 cut(s)	218, 285, 332, 660, 674, 746, 806, 1022
Hpy8I	GTNNAC	3 cut(s)	591, 801, 1139
Hpy99I	CGWCG	2 cut(s)	224, 870
HpyAV	CCTTC	3 cut(s)	84, 149, 248
HpyCH4III	ACNGT	2 cut(s)	904, 988
HpyCH4IV	ACGT	2 cut(s)	222, 868
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 287, 299, 353, 477, 978
HpyF3I	CTNAG	4 cut(s)	313, 357, 993, 1041
HpySE526I	ACGT	2 cut(s)	222, 868
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	7 cut(s)	329, 520, 526, 552, 609, 809, 827
HspAI	GCGC	2 cut(s)	209, 1108
Kzo9I	GATC	5 cut(s)	322, 334, 538, 812, 1114
LmnI	GCTCC	3 cut(s)	287, 352, 924
Lsp1109I	GCAGC	7 cut(s)	35, 180, 277, 331, 464, 638, 990
LweI	GCATC	3 cut(s)	265, 781, 868
MaeI	CTAG	3 cut(s)	630, 785, 1134
MaeII	ACGT	2 cut(s)	222, 868
MaeIII	GTNAC	4 cut(s)	107, 400, 574, 746
MalI	GATC	5 cut(s)	324, 336, 540, 814, 1116
MbiI	CCGCTC	1 cut(s)	1086
MboI	GATC	5 cut(s)	322, 334, 538, 812, 1114
MboII	GAAGA	7 cut(s)	17, 20, 158, 271, 578, 851, 1013
MhlI	GDGCHC	2 cut(s)	681, 803
MlsI	TGGCCA	2 cut(s)	1075, 1169
MluCI	AATT	8 cut(s)	94, 141, 150, 528, 728, 816, 1069, 1163
MluNI	TGGCCA	2 cut(s)	1075, 1169
MmeI	TCCRAC	2 cut(s)	354, 691
MnlI	CCTC	6 cut(s)	53, 114, 225, 524, 908, 1018
Mox20I	TGGCCA	2 cut(s)	1075, 1169
Mph1103I	ATGCAT	2 cut(s)	247, 466
MroXI	GAANNNNTTC	2 cut(s)	532, 858
MscI	TGGCCA	2 cut(s)	1075, 1169
MseI	TTAA	4 cut(s)	119, 819, 914, 1174
MslI	CAYNNNNRTG	2 cut(s)	521, 702
Msp20I	TGGCCA	2 cut(s)	1075, 1169
MspA1I	CMGCKG	1 cut(s)	317
MspR9I	CCNGG	3 cut(s)	126, 198, 351
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	3 cut(s)	126, 198, 351
MwoI	GCNNNNNNNGC	6 cut(s)	20, 287, 299, 353, 477, 978
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	5 cut(s)	322, 334, 538, 812, 1114
NlaIII	CATG	7 cut(s)	329, 520, 526, 552, 609, 809, 827
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	574, 746
NsiI	ATGCAT	2 cut(s)	247, 466
NspI	RCATGY	1 cut(s)	827
NspV	TTCGAA	1 cut(s)	17
OliI	CACNNNNGTG	1 cut(s)	702
PagI	TCATGA	1 cut(s)	805
PciI	ACATGT	1 cut(s)	823
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 42
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	2 cut(s)	532, 858
PfeI	GAWTC	3 cut(s)	270, 389, 554
PflFI	GACNNNGTC	1 cut(s)	779
PkrI	GCNGC	9 cut(s)	25, 195, 280, 292, 346, 436, 479, 628, 980
PpuMI	RGGWCCY	1 cut(s)	781
PscI	ACATGT	1 cut(s)	823
Psp124BI	GAGCTC	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	781
Psp6I	CCWGG	3 cut(s)	124, 196, 349
PspFI	CCCAGC	1 cut(s)	950
PspGI	CCWGG	3 cut(s)	124, 196, 349
PspPI	GGNCC	1 cut(s)	781
PspPPI	RGGWCCY	1 cut(s)	781
PsyI	GACNNNGTC	1 cut(s)	779
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	734
RsaNI	GTAC	1 cut(s)	733
RseI	CAYNNNNRTG	2 cut(s)	521, 702
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	119, 819, 914, 1174
SatI	GCNGC	9 cut(s)	24, 194, 279, 291, 345, 435, 478, 627, 979
Sau3AI	GATC	5 cut(s)	322, 334, 538, 812, 1114
Sau96I	GGNCC	1 cut(s)	781
ScrFI	CCNGG	3 cut(s)	126, 198, 351
SduI	GDGCHC	2 cut(s)	681, 803
SfaNI	GCATC	3 cut(s)	265, 781, 868
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	2 cut(s)	521, 702
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SpeI	ACTAGT	1 cut(s)	1133
Sse9I	AATT	8 cut(s)	94, 141, 150, 528, 728, 816, 1069, 1163
SsiI	CCGC	3 cut(s)	278, 434, 1086
SspMI	CTAG	3 cut(s)	630, 785, 1134
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	3 cut(s)	124, 196, 349
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	2 cut(s)	904, 988
TaiI	ACGT	2 cut(s)	225, 871
TaqI	TCGA	4 cut(s)	17, 45, 98, 273
TasI	AATT	8 cut(s)	94, 141, 150, 528, 728, 816, 1069, 1163
TauI	GCSGC	2 cut(s)	281, 437
TfiI	GAWTC	3 cut(s)	270, 389, 554
Tru1I	TTAA	4 cut(s)	119, 819, 914, 1174
Tru9I	TTAA	4 cut(s)	119, 819, 914, 1174
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	2 cut(s)	574, 746
TseI	GCWGC	7 cut(s)	23, 193, 290, 344, 477, 626, 978
Tsp45I	GTSAC	2 cut(s)	574, 746
TspDTI	ATGAA	2 cut(s)	521, 1014
TspGWI	ACGGA	2 cut(s)	730, 1023
TspRI	CASTG	1 cut(s)	907
Tth111I	GACNNNGTC	1 cut(s)	779
VneI	GTGCAC	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	781
XapI	RAATTY	1 cut(s)	528
XceI	RCATGY	1 cut(s)	827
XmnI	GAANNNNTTC	2 cut(s)	532, 858
XspI	CTAG	3 cut(s)	630, 785, 1134
Zsp2I	ATGCAT	2 cut(s)	247, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.