Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036312.1

Orthogroup ID

OG0006808

Physical Location & Seq

Genomic Coordinates Reverse (-)

1684 .. 4442

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036312.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

gctcaaattgaagcaattgaaggtgaaatcaagtgcaagcttgagagagtggagtggttgcctggcttttattctcttcccccagatgttcaaatcgctaattcaaatgcgtacagagaagggaagatatatggaatcgatgcggcgtcaggagctgctgtttcagcattggatatttcagctggagatcatgttcttgatctttgcgccgcgccgggtgctaagctttgtttgatatcagacattctgggtgattcgggttcagtaactggcattgatgtttcaagacaccgactagcggcttgtaggacaatgctgcagaaatatgcattgggcaatcgctgccggctcttcgttgctgatgggactactttttccatcattcccatgagagttcgtgccaattctaaatcatgtgaatctggactaggggaaaatgtgacatttaaggagtggacatctaggagaccatggaaagaaaggaaagaggcagctaggataagaaaaggtggtgctgtgctttcaggtccagagctcatctattatggctgccaatctggtgttgtcgggctaaagaaaagtgaactgtaccgaactttttgtgacactgagtttttgagctgtggctatgacaaggtcctagttgatgcagagtgcactcatgatggatcaattaaacatgtccaaaaatttgaacactggggttgggacactcttcaacgccgtgtattggatgccgagagaggtgatagcctcactgcacttcagttaaagctccttacgaatggttttagattgctaaaagctggggggctgcttgtttatagcacttgcagtttgacagttgctcagaatgaagatgtggtaaagcagtttcttgaggaaaacccttctgcggagttgcgggcgatagatgctgctgaaaattggccttgcaagaacgggcaactaccgaaaaccctgcgctttgatcctttgacttcaaacactagtggactgtttgttgcaaagtttacaaaattggccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F

Protein Analysis

343

Amino Acids

37.63

Weight (kDa)

7.98

Isoelectric Point (pI)

29.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66180 AT5G66180 AT5G66180
fragaria_vesca	FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660 FvH4_1g11660
malus_domestica	MD02G1129700.v1.1 MD15G1244000.v1.1
prunus_persica	Prupe.7G169900_v2.0.a1
pyrus_communis	pycom02g10170 pycom15g21490
rosa_chinensis	RchiOBHm_Chr2g0099251
rosa_laevigata	RLG00000016865
rosa_multiflora	Rmu_sc0002025.1_g000004 Rmu_sc0036312.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143280
rosa_rugosa	Rorug02G0078200
rosa_samantha	Rh2AG127400 Rh2BG130400 Rh2CG131600 Rh2DG132000
rosa_wichuraiana	Rw2G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	5 cut(s)	143, 210, 299, 896, 904
AclWI	GGATC	2 cut(s)	676, 965
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	113, 590
AfiI	CCNNNNNNNGG	3 cut(s)	298, 730, 895
AflIII	ACRYGT	1 cut(s)	679
AgsI	TTSAA	8 cut(s)	11, 20, 92, 105, 285, 695, 719, 984
AhlI	ACTAGT	1 cut(s)	989
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	9 cut(s)	40, 155, 182, 226, 494, 535, 621, 775, 806
AluI	AGCT	9 cut(s)	40, 155, 182, 226, 494, 535, 621, 775, 806
Alw21I	GWGCWC	2 cut(s)	537, 659
Alw26I	GTCTC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	655
AlwI	GGATC	2 cut(s)	676, 965
AlwNI	CAGNNNCTG	2 cut(s)	155, 269
AoxI	GGCC	2 cut(s)	929, 1023
ApaLI	GTGCAC	1 cut(s)	655
ApeKI	GCWGC	7 cut(s)	155, 316, 342, 491, 549, 814, 917
ApoI	RAATTY	1 cut(s)	689
AspLEI	GCGC	3 cut(s)	209, 214, 966
AspS9I	GGNCC	2 cut(s)	527, 637
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	3 cut(s)	35, 263, 758
AvaII	GGWCC	2 cut(s)	527, 637
BaeGI	GKGCMC	1 cut(s)	659
BalI	TGGCCA	1 cut(s)	1025
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	537, 659
BbvI	GCAGC	7 cut(s)	142, 303, 329, 503, 536, 801, 904
BccI	CCATC	3 cut(s)	356, 386, 659
BceAI	ACGGC	1 cut(s)	708
BcgI	CGANNNNNNTGC	2 cut(s)	943, 977
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	989
BfaI	CTAG	6 cut(s)	296, 428, 462, 495, 641, 990
BfmI	CTRYAG	1 cut(s)	317
BlpI	GCTNAGC	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	63, 216
Bme18I	GGWCC	2 cut(s)	527, 637
BmgT120I	GGNCC	2 cut(s)	527, 637
BmrFI	CCNGG	2 cut(s)	63, 216
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	4 cut(s)	130, 637, 724, 904
BmuI	ACTGGG	1 cut(s)	709
BpmI	CTGGAG	1 cut(s)	204
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	62, 899
BpuMI	CCSGG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	1 cut(s)	470
BsaXI	ACNNNNNCTCC	4 cut(s)	144, 174, 177, 207
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 730, 895
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	274, 704
BseBI	CCWGG	1 cut(s)	63
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	739
BseLI	CCNNNNNNNGG	3 cut(s)	298, 730, 895
BseMII	CTCAG	2 cut(s)	600, 863
BseNI	ACTGG	2 cut(s)	274, 704
BseSI	GKGCMC	1 cut(s)	659
BseXI	GCAGC	7 cut(s)	142, 303, 329, 503, 536, 801, 904
BseYI	CCCAGC	1 cut(s)	806
BsgI	GTGCAG	1 cut(s)	744
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	2 cut(s)	931, 1025
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	537, 659
BsiSI	CCGG	2 cut(s)	215, 346
BslFI	GGGAC	2 cut(s)	379, 722
BslI	CCNNNNNNNGG	3 cut(s)	298, 730, 895
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	2 cut(s)	379, 722
BsnI	GGCC	2 cut(s)	931, 1025
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	537, 659
Bsp143I	GATC	4 cut(s)	187, 199, 668, 970
Bsp1720I	GCTNAGC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	470
BspACI	CCGC	5 cut(s)	143, 210, 299, 896, 904
BspANI	GGCC	2 cut(s)	931, 1025
BspCNI	CTCAG	2 cut(s)	601, 862
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	661
BspMAI	CTGCAG	1 cut(s)	321
BspPI	GGATC	2 cut(s)	676, 965
BspQI	GCTCTTC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	274, 704
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	4 cut(s)	187, 199, 668, 970
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	588, 844, 999
Bst6I	CTCTTC	3 cut(s)	81, 356, 720
BstACI	GRCGYC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstC8I	GCNNGC	3 cut(s)	38, 347, 906
BstDEI	CTNAG	3 cut(s)	222, 609, 849
BstDSI	CCRYGG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	739
BstFNI	CGCG	1 cut(s)	212
BstHHI	GCGC	3 cut(s)	209, 214, 966
BstKTI	GATC	4 cut(s)	190, 202, 671, 973
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	187, 199, 668, 970
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 164, 218, 342, 914
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	2 cut(s)	61, 214
BstSFI	CTRYAG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	659
BstUI	CGCG	1 cut(s)	212
BstV1I	GCAGC	7 cut(s)	142, 303, 329, 503, 536, 801, 904
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	931, 1025
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	739
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	3 cut(s)	606, 697, 756
Cac8I	GCNNGC	3 cut(s)	38, 347, 906
CaiI	CAGNNNCTG	2 cut(s)	155, 269
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	3 cut(s)	209, 214, 966
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	2 cut(s)	527, 637
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	112, 589
CviAII	CATG	6 cut(s)	191, 388, 414, 471, 662, 680
CviQI	GTAC	2 cut(s)	112, 589
DdeI	CTNAG	3 cut(s)	222, 609, 849
DpnI	GATC	4 cut(s)	189, 201, 670, 972
DpnII	GATC	4 cut(s)	187, 199, 668, 970
EaeI	YGGCCR	1 cut(s)	1023
Eam1104I	CTCTTC	3 cut(s)	81, 356, 720
EarI	CTCTTC	3 cut(s)	81, 356, 720
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	470
Eco24I	GRGCYC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	2 cut(s)	527, 637
Eco53kI	GAGCTC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	749
EcoICRI	GAGCTC	1 cut(s)	535
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	470
EcoT22I	ATGCAT	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	6 cut(s)	194, 391, 417, 474, 665, 683
FaqI	GGGAC	2 cut(s)	379, 722
FatI	CATG	6 cut(s)	190, 387, 413, 470, 661, 679
FauI	CCCGC	1 cut(s)	897
FokI	GGATG	1 cut(s)	746
FriOI	GRGCYC	1 cut(s)	537
FspBI	CTAG	6 cut(s)	296, 428, 462, 495, 641, 990
GlaI	GCGC	3 cut(s)	208, 213, 965
GsaI	CCCAGC	1 cut(s)	810
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	931, 1025
HapII	CCGG	2 cut(s)	215, 346
HgaI	GACGC	1 cut(s)	135
HhaI	GCGC	3 cut(s)	209, 214, 966
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	6 cut(s)	194, 391, 417, 474, 665, 683
Hin6I	GCGC	3 cut(s)	207, 212, 964
HinP1I	GCGC	3 cut(s)	207, 212, 964
HindIII	AAGCTT	2 cut(s)	38, 224
HinfI	GANTC	3 cut(s)	135, 254, 419
HpaII	CCGG	2 cut(s)	215, 346
HphI	GGTGA	3 cut(s)	35, 263, 758
Hpy166II	GTNNAC	5 cut(s)	456, 584, 657, 995, 1014
Hpy188I	TCNGA	2 cut(s)	241, 852
Hpy188III	TCNNGA	7 cut(s)	150, 197, 285, 423, 530, 662, 878
Hpy8I	GTNNAC	5 cut(s)	456, 584, 657, 995, 1014
HpyAV	CCTTC	3 cut(s)	14, 113, 900
HpyCH4III	ACNGT	3 cut(s)	588, 844, 999
HpyCH4V	TGCA	9 cut(s)	36, 319, 329, 650, 657, 761, 834, 936, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 164, 218, 342, 914
HpyF3I	CTNAG	3 cut(s)	222, 609, 849
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	6 cut(s)	194, 391, 417, 474, 665, 683
HspAI	GCGC	3 cut(s)	207, 212, 964
KroI	GCCGGC	1 cut(s)	345
KroNI	GCCGGC	1 cut(s)	347
Kzo9I	GATC	4 cut(s)	187, 199, 668, 970
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	2 cut(s)	152, 780
Lsp1109I	GCAGC	7 cut(s)	142, 303, 329, 503, 536, 801, 904
LweI	GCATC	4 cut(s)	130, 637, 724, 904
MaeI	CTAG	6 cut(s)	296, 428, 462, 495, 641, 990
MaeIII	GTNAC	3 cut(s)	265, 439, 602
MalI	GATC	4 cut(s)	189, 201, 670, 972
MboI	GATC	4 cut(s)	187, 199, 668, 970
MboII	GAAGA	5 cut(s)	68, 136, 343, 707, 869
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	537, 659
MlsI	TGGCCA	1 cut(s)	1025
MluCI	AATT	8 cut(s)	6, 15, 100, 403, 672, 689, 925, 1019
MluNI	TGGCCA	1 cut(s)	1025
MnlI	CCTC	4 cut(s)	481, 737, 764, 874
Mox20I	TGGCCA	1 cut(s)	1025
Mph1103I	ATGCAT	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	4 cut(s)	447, 675, 770, 1030
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	1025
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	215, 346
MspR9I	CCNGG	2 cut(s)	63, 216
MteI	GCGCNGCGC	1 cut(s)	210
MunI	CAATTG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	5 cut(s)	152, 164, 218, 342, 914
NaeI	GCCGGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	470
NdeII	GATC	4 cut(s)	187, 199, 668, 970
NgoMIV	GCCGGC	1 cut(s)	345
NlaIII	CATG	6 cut(s)	194, 391, 417, 474, 665, 683
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	2 cut(s)	439, 602
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	683
PagI	TCATGA	1 cut(s)	661
PciI	ACATGT	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	135, 254, 419
PflFI	GACNNNGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	637
PscI	ACATGT	1 cut(s)	679
Psp124BI	GAGCTC	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	527, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstI	CTGCAG	1 cut(s)	321
PstNI	CAGNNNCTG	2 cut(s)	155, 269
PsyI	GACNNNGTC	1 cut(s)	635
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	113, 590
RsaNI	GTAC	2 cut(s)	112, 589
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	447, 675, 770, 1030
Sau3AI	GATC	4 cut(s)	187, 199, 668, 970
Sau96I	GGNCC	2 cut(s)	527, 637
ScrFI	CCNGG	2 cut(s)	63, 216
SduI	GDGCHC	2 cut(s)	537, 659
SfaNI	GCATC	4 cut(s)	130, 637, 724, 904
SfcI	CTRYAG	1 cut(s)	317
SinI	GGWCC	2 cut(s)	527, 637
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	41, 878
SmoI	CTYRAG	2 cut(s)	41, 878
SpeI	ACTAGT	1 cut(s)	989
Sse9I	AATT	8 cut(s)	6, 15, 100, 403, 672, 689, 925, 1019
SsiI	CCGC	5 cut(s)	143, 210, 299, 896, 904
SspMI	CTAG	6 cut(s)	296, 428, 462, 495, 641, 990
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	2 cut(s)	61, 214
StyI	CCWWGG	1 cut(s)	470
TaaI	ACNGT	3 cut(s)	588, 844, 999
TaqI	TCGA	1 cut(s)	138
TasI	AATT	8 cut(s)	6, 15, 100, 403, 672, 689, 925, 1019
TauI	GCSGC	3 cut(s)	146, 212, 302
TfiI	GAWTC	3 cut(s)	135, 254, 419
Tru1I	TTAA	4 cut(s)	447, 675, 770, 1030
Tru9I	TTAA	4 cut(s)	447, 675, 770, 1030
TscAI	CASTG	3 cut(s)	613, 704, 763
TseFI	GTSAC	2 cut(s)	439, 602
TseI	GCWGC	7 cut(s)	155, 316, 342, 491, 549, 814, 917
Tsp45I	GTSAC	2 cut(s)	439, 602
TspDTI	ATGAA	1 cut(s)	870
TspRI	CASTG	3 cut(s)	613, 704, 763
Tth111I	GACNNNGTC	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	527, 637
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	1 cut(s)	683
XspI	CTAG	6 cut(s)	296, 428, 462, 495, 641, 990
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.