Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Reverse (-)

14021 .. 14770

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAATGTTTTATCATGTTCCATCAACACACTAATAAAAGAAGGGTTATATGAGATATCTGGTGTAGAAGTAGGCCAACATTTCTATTGGCAAATAGGGGGTTTCCAGGTCCATGCCCAAGTTCTTATTACTTCTTGGGTTGTAATTGCTATCTTATTAGGTTCCGCAGTTCTAGCGATTCGCAATCCACAAACAATTCCAACTGACGGCCAAAATTTCTTTGAATTTGTCCTTGAATTCATTCGAGACGTGAGTAAAACCCAGATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATTGGAACCCTGTTTTTATTTATTTTTGTTTCTAACTGGTCAGGAGCCCTTTTACCGTGGAAAATTATCCAGTTACCTCAAGGGGAGTTAGCAGCACCAACGAATGATATAAATACGACGGTTGCTTTAGCTTTACTCACATCAGTAGCCTATTTTTATGCGGGGCTTAGCAAAAAAGGATTAGGGTATTTCAGTAAATACATTCAACCAACCCCAATTCTTTTACCCATTAACATCTTAGAAGATTTTACAAAACCCCTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCCGATGAATTAGTCGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTGGTTCCTATACCTGTTATGTTCCTTGGATTATTTACAAGCGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTATATAGGTGAGTCTATGGAAGGTCATCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098807 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

249

Amino Acids

27.35

Weight (kDa)

4.97

Isoelectric Point (pI)

24.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_A	PF00119	43 - 241	4.8e-50	ATP synthase A chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	165, 458, 678, 713
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	3 cut(s)	214, 224, 236
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	206, 299
AgsI	TTSAA	4 cut(s)	224, 236, 503, 686
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	3 cut(s)	428, 689, 710
AluI	AGCT	3 cut(s)	428, 689, 710
Alw26I	GTCTC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	73, 208
ApeKI	GCWGC	2 cut(s)	389, 710
ApoI	RAATTY	3 cut(s)	214, 224, 236
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	109, 281
AsuHPI	GGTGA	1 cut(s)	737
AvaII	GGWCC	2 cut(s)	109, 281
BanII	GRGCYC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	401, 697
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	173
BisI	GCNGC	3 cut(s)	390, 711, 714
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	3 cut(s)	391, 712, 715
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	109, 281
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	109, 281
BmiI	GGNNCC	5 cut(s)	163, 291, 304, 343, 642
BmrFI	CCNGG	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	284, 353, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 299
Bse1I	ACTGG	2 cut(s)	338, 367
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	3 cut(s)	284, 353, 661
BseLI	CCNNNNNNNGG	2 cut(s)	206, 299
BseNI	ACTGG	2 cut(s)	338, 367
BseXI	GCAGC	2 cut(s)	401, 697
BshFI	GGCC	2 cut(s)	75, 210
BslI	CCNNNNNNNGG	2 cut(s)	206, 299
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	75, 210
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp1720I	GCTNAGC	1 cut(s)	464
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	4 cut(s)	165, 458, 678, 713
BspANI	GGCC	2 cut(s)	75, 210
BspLI	GGNNCC	5 cut(s)	163, 291, 304, 343, 642
BsrI	ACTGG	2 cut(s)	338, 367
BssECI	CCNNGG	3 cut(s)	284, 353, 661
BssT1I	CCWWGG	2 cut(s)	284, 661
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	2 cut(s)	354, 418
BstDEI	CTNAG	3 cut(s)	464, 535, 563
BstDSI	CCRYGG	2 cut(s)	284, 353
BstMAI	GTCTC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 707
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	401, 697
BsuRI	GGCC	2 cut(s)	75, 210
BtgI	CCRYGG	2 cut(s)	284, 353
BtrI	CACGTC	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	109, 281
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	3 cut(s)	15, 113, 285
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	3 cut(s)	464, 535, 563
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	2 cut(s)	284, 661
Eco24I	GRGCYC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	109, 281
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	284, 661
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	284, 661
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	3 cut(s)	18, 116, 288
FatI	CATG	3 cut(s)	14, 112, 284
FauI	CCCGC	2 cut(s)	451, 671
Fnu4HI	GCNGC	3 cut(s)	390, 711, 714
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	390, 711, 714
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	390, 711, 714
HaeIII	GGCC	2 cut(s)	75, 210
Hin1II	CATG	3 cut(s)	18, 116, 288
HinfI	GANTC	3 cut(s)	178, 682, 728
HphI	GGTGA	1 cut(s)	737
Hpy188I	TCNGA	1 cut(s)	581
Hpy188III	TCNNGA	2 cut(s)	245, 339
Hpy99I	CGWCG	1 cut(s)	418
HpyAV	CCTTC	2 cut(s)	35, 731
HpyCH4III	ACNGT	2 cut(s)	354, 418
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 707
HpyF3I	CTNAG	3 cut(s)	464, 535, 563
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	18, 116, 288
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	9 cut(s)	45, 92, 119, 275, 319, 320, 324, 380, 663
Lsp1109I	GCAGC	2 cut(s)	401, 697
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	369
MboII	GAAGA	2 cut(s)	284, 551
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	8 cut(s)	144, 195, 214, 224, 236, 360, 513, 599
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	528, 748
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	173, 707
NcoI	CCATGG	1 cut(s)	284
NlaIII	CATG	3 cut(s)	18, 116, 288
NlaIV	GGNNCC	5 cut(s)	163, 291, 304, 343, 642
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	178, 682
PkrI	GCNGC	3 cut(s)	391, 712, 715
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	5 cut(s)	163, 291, 304, 343, 642
PspPI	GGNCC	2 cut(s)	109, 281
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	528, 748
SatI	GCNGC	3 cut(s)	390, 711, 714
Sau96I	GGNCC	2 cut(s)	109, 281
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	346
SinI	GGWCC	2 cut(s)	109, 281
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	8 cut(s)	144, 195, 214, 224, 236, 360, 513, 599
SsiI	CCGC	4 cut(s)	165, 458, 678, 713
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	284, 661
TaaI	ACNGT	2 cut(s)	354, 418
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	244, 571
TasI	AATT	8 cut(s)	144, 195, 214, 224, 236, 360, 513, 599
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	2 cut(s)	178, 682
Tru1I	TTAA	2 cut(s)	528, 748
Tru9I	TTAA	2 cut(s)	528, 748
TseI	GCWGC	2 cut(s)	389, 710
TspDTI	ATGAA	3 cut(s)	17, 229, 612
VpaK11BI	GGWCC	2 cut(s)	109, 281
XapI	RAATTY	3 cut(s)	214, 224, 236
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.