Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Reverse (-)

32952499 .. 32953476

Gene Structure 978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1263300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATGGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATACGGCTTTTCGAGAATGCATCACTTTGGGAATTTCAATGATTTGTTTAATCGATACAAATTGTGACCCGGATTCGATTCCAGTGAATGATGACGCTATAGCTTCAATCCAATTAATTCTTAACAAATTAGTATTTGCAATTTTCCATGCCCAAGTACTTATTACTTCTTGGGTCGTAATTGCTATTTTATTAGGGTCAACCATTATAGCCATTCGTAATCAACAAACCATTCCTACTGACGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATTTGGGACGTGAGCAAAACTCAGATTGGAGAAGAATATATATGGTCCATGGGTTCCCTTTATTGGAAAATCATACAGTTACCTCATGGGAAGTTAGTCGCACCCACAAATGATGTAAATACTACGGTTGCTTTAGCTTTACTCACTTCAGTAGCATATTTCTATGTGGGCCTTACAAAAAAGGGATTAGGTTATTTCGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCGTTAAGTGGACAAGACAAGCGAGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S2

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

4.6

Isoelectric Point (pI)

24.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	1 - 66	3.3e-17	Ribosomal protein S2
ATP-synt_A	PF00119	71 - 200	1.9e-20	ATP synthase A chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	81, 298, 320
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	290, 387
AgsI	TTSAA	5 cut(s)	87, 156, 308, 320, 536
AjiI	CACGTC	1 cut(s)	334
AluBI	AGCT	2 cut(s)	152, 461
AluI	AGCT	2 cut(s)	152, 461
AoxI	GGCC	1 cut(s)	493
ApoI	RAATTY	3 cut(s)	81, 298, 320
AseI	ATTAAT	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	369, 493
AsuC2I	CCSGG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	69
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	147
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	369
BmgBI	CACGTC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	369, 493
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	328, 360
BpuMI	CCSGG	1 cut(s)	119
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 387
Bse1I	ACTGG	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	372
BseLI	CCNNNNNNNGG	2 cut(s)	290, 387
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	495
BshVI	ATCGAT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	290, 387
BsmFI	GGGAC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	293, 402, 451
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	2 cut(s)	345, 568
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstPI	GGTNACC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	495
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	615
Cfr13I	GGNCC	2 cut(s)	369, 493
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	3 cut(s)	197, 373, 410
CviJI	RGCY	5 cut(s)	56, 152, 260, 461, 495
CviKI_1	RGCY	5 cut(s)	56, 152, 260, 461, 495
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	345, 568
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	9
EcoO65I	GGTNACC	1 cut(s)	9
EcoRI	GAATTC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	3 cut(s)	200, 376, 413
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	3 cut(s)	196, 372, 409
FbaI	TGATCA	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	200, 376, 413
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	2 cut(s)	122, 127
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	249, 602
Hpy188I	TCNGA	2 cut(s)	297, 348
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	249, 602
HpyCH4III	ACNGT	3 cut(s)	293, 402, 451
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	69, 188
HpyF3I	CTNAG	2 cut(s)	345, 568
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	200, 376, 413
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	2 cut(s)	132, 144
LweI	GCATC	1 cut(s)	78
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	9, 113, 402
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	56, 368, 584
MluCI	AATT	9 cut(s)	81, 109, 161, 165, 176, 189, 228, 298, 320
MnlI	CCTC	1 cut(s)	417
Mph1103I	ATGCAT	1 cut(s)	71
MseI	TTAA	5 cut(s)	98, 164, 171, 561, 596
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	119
Mva1269I	GAATGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	119
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	200, 376, 413
NlaIV	GGNNCC	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	71
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	122, 127
PshBI	ATTAAT	1 cut(s)	164
PspEI	GGTNACC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	379
PspPI	GGNCC	2 cut(s)	369, 493
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	5 cut(s)	98, 164, 171, 561, 596
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	2 cut(s)	369, 493
ScaI	AGTACT	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	5 cut(s)	154, 336, 409, 463, 517
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	9 cut(s)	81, 109, 161, 165, 176, 189, 228, 298, 320
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	293, 402, 451
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	61, 102, 125
TasI	AATT	9 cut(s)	81, 109, 161, 165, 176, 189, 228, 298, 320
TatI	WGTACW	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	122, 127
Tru1I	TTAA	5 cut(s)	98, 164, 171, 561, 596
Tru9I	TTAA	5 cut(s)	98, 164, 171, 561, 596
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	138
VpaK11BI	GGWCC	1 cut(s)	369
VspI	ATTAAT	1 cut(s)	164
XapI	RAATTY	3 cut(s)	81, 298, 320
ZrmI	AGTACT	1 cut(s)	207
Zsp2I	ATGCAT	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.