Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Reverse (-)

61999971 .. 62000360

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0490900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGCCAACTCAGCACTTTTCTCCGATCACGAGATTCCGATGATACCCAACACCTTCTCTTCACTCTCCGGCATCTTCGACTCAGAACCCGAGAGGGATTCTCTTGGTTTCATGGACTTGCTCGGCAACGCGAAGGACTACACTCCTCTGTTTGATTTCGGGACCCAAACGACGCCGTCTAAATCGTTGATGACGATGATGATGCCACCTCAGCAGCAGCAGCAACAAACACAAATACAAACACAAGCGCTTCCATCGCCGTCGTCTACAGTGCCGGAGAGTGAGACTAACTCCGAGGCCTTGAACTCTACAGCCAATACTGCTCTTACGACACCTAACTCGTCTTCGATCTCGTCCTCGTCTAACAAAGCTCATGATCGAGGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S2

Protein Analysis

129

Amino Acids

13.91

Weight (kDa)

4.34

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AccII	CGCG	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	173
AfeI	AGCGCT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	304
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	2 cut(s)	3, 297
ApeKI	GCWGC	3 cut(s)	214, 217, 220
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	226, 229, 232
BccI	CCATC	1 cut(s)	262
BceAI	ACGGC	2 cut(s)	160, 244
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BcoDI	GTCTC	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	267, 309
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	3 cut(s)	215, 218, 221
BlsI	GCNGC	3 cut(s)	216, 219, 222
Bme18I	GGWCC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	2 cut(s)	163, 164
BmsI	GCATC	2 cut(s)	81, 192
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	4 cut(s)	85, 117, 275, 307
Bpu10I	CCTNAGC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	24, 96, 224
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	226, 229, 232
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	5, 299
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	69, 275
BslFI	GGGAC	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	5, 299
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	3 cut(s)	25, 348, 376
BspANI	GGCC	2 cut(s)	5, 299
BspCNI	CTCAG	3 cut(s)	23, 95, 223
BspFNI	CGCG	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	2 cut(s)	163, 164
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	25, 348, 376
BssNI	GRCGYC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	29
Bst2BI	CACGAG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	10, 82, 210
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	3 cut(s)	28, 351, 379
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	25, 348, 376
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 211, 220, 256, 320
BstSFI	CTRYAG	2 cut(s)	267, 309
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	226, 229, 232
BstV2I	GAAGAC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	5, 299
BtgZI	GCGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	276
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	162
CseI	GACGC	1 cut(s)	181
CviAII	CATG	2 cut(s)	112, 374
CviJI	RGCY	4 cut(s)	5, 299, 314, 371
CviKI_1	RGCY	4 cut(s)	5, 299, 314, 371
DdeI	CTNAG	3 cut(s)	10, 82, 210
DpnI	GATC	3 cut(s)	27, 350, 378
DpnII	GATC	3 cut(s)	25, 348, 376
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	162
FaeI	CATG	2 cut(s)	115, 377
FaiI	YATR	2 cut(s)	113, 375
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	111, 373
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	3 cut(s)	215, 218, 221
Fsp4HI	GCNGC	3 cut(s)	215, 218, 221
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	215, 218, 221
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	5, 299
HapII	CCGG	2 cut(s)	69, 275
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	115, 377
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	34, 80, 98
HpaII	CCGG	2 cut(s)	69, 275
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	4 cut(s)	25, 39, 85, 295
Hpy188III	TCNNGA	3 cut(s)	29, 160, 374
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	2 cut(s)	175, 265
HpyAV	CCTTC	2 cut(s)	64, 127
HpyCH4III	ACNGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 211, 220, 256, 320
HpyF3I	CTNAG	3 cut(s)	10, 82, 210
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	115, 377
HspAI	GCGC	1 cut(s)	248
KflI	GGGWCCC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	25, 348, 376
LpnPI	CCDG	2 cut(s)	82, 288
Lsp1109I	GCAGC	3 cut(s)	226, 229, 232
LweI	GCATC	2 cut(s)	81, 192
MalI	GATC	3 cut(s)	27, 350, 378
MboI	GATC	3 cut(s)	25, 348, 376
MboII	GAAGA	3 cut(s)	51, 67, 336
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	87, 156, 219, 289, 367, 374
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	69, 275
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	11, 211, 220, 256, 320
NdeII	GATC	3 cut(s)	25, 348, 376
NlaIII	CATG	2 cut(s)	115, 377
NlaIV	GGNNCC	2 cut(s)	163, 164
NmeAIII	GCCGAG	1 cut(s)	102
PagI	TCATGA	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	34, 98
PflFI	GACNNNGTC	1 cut(s)	175
PkrI	GCNGC	3 cut(s)	216, 219, 222
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	163, 164
PspPI	GGNCC	1 cut(s)	162
PspPPI	RGGWCCY	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	175
SatI	GCNGC	3 cut(s)	215, 218, 221
Sau3AI	GATC	3 cut(s)	25, 348, 376
Sau96I	GGNCC	1 cut(s)	162
SchI	GAGTC	1 cut(s)	74
SetI	ASST	4 cut(s)	56, 211, 337, 373
SfaNI	GCATC	2 cut(s)	81, 192
SfcI	CTRYAG	2 cut(s)	267, 309
SinI	GGWCC	1 cut(s)	162
SseBI	AGGCCT	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	78, 347, 379
TfiI	GAWTC	2 cut(s)	34, 98
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	3 cut(s)	214, 217, 220
TspDTI	ATGAA	1 cut(s)	100
TspRI	CASTG	1 cut(s)	276
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.