pycom08g10380

ATP synthase subunit a, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0017493
Physical Location & Seq
Forward (+)
8701785 .. 8702078
294 bp
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UTR
Exon/CDS
Intron
pycom08g10380.1

Sequence Viewer

Length: 294 bp
ATGCGACGTACGATCAGCAAGAGATGTATTCCAATCCTTTTACCCATTAATATTTTAGAAAATTTCACAAAACCCTTATCGCTTAGTTTTCGACTTTTGGGAAATATTTTAGTTGATGAATTAGTAGTGGTTGTTCTTGTTTCTTTAGTACCTTCAGTAGTTCCTATACATGTCATGTTCCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCAACTTTAGCTGCGGCTTATATAGGCGAATCCATAGAAGGTCATCATTGACTAGTTACATAGTCTTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt_A

Protein Analysis

98

Amino Acids

11.26

Weight (kDa)

10.23

Isoelectric Point (pI)

64.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_A PF00119 9 - 59 3.2e-12 ATP synthase A chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017493)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00150
malus_domestica MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis pycom08g10380
rosa_chinensis RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata RLG00000004365 RLG00000004453
rosa_rugosa Rorug02G0490900
rosa_samantha Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 199, 234
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 2 cut(s) 10, 150
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 1 cut(s) 207
AhlI ACTAGT 1 cut(s) 272
AluBI AGCT 2 cut(s) 210, 231
AluI AGCT 2 cut(s) 210, 231
ApeKI GCWGC 1 cut(s) 231
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 1 cut(s) 48
BbvI GCAGC 1 cut(s) 218
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 232, 235
BlsI GCNGC 2 cut(s) 233, 236
BsaJI CCNNGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 218
BsiWI CGTACG 1 cut(s) 8
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 2 cut(s) 199, 234
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 83, 286
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 9, 149
CviAII CATG 2 cut(s) 170, 175
CviJI RGCY 4 cut(s) 210, 231, 237, 290
CviKI_1 RGCY 4 cut(s) 210, 231, 237, 290
CviQI GTAC 2 cut(s) 9, 149
DdeI CTNAG 2 cut(s) 83, 286
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 2 cut(s) 173, 178
FaiI YATR 7 cut(s) 167, 171, 176, 241, 243, 255, 281
FatI CATG 2 cut(s) 169, 174
Fnu4HI GCNGC 2 cut(s) 232, 235
Fsp4HI GCNGC 2 cut(s) 232, 235
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 232, 235
Hin1II CATG 2 cut(s) 173, 178
HinfI GANTC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 9
HpyAV CCTTC 2 cut(s) 162, 252
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 2 cut(s) 83, 286
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 2 cut(s) 173, 178
Kzo9I GATC 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 218
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MluCI AATT 2 cut(s) 61, 119
MseI TTAA 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 228
NdeII GATC 1 cut(s) 12
NlaIII CATG 2 cut(s) 173, 178
NspI RCATGY 1 cut(s) 173
PciI ACATGT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 249
Pfl23II CGTACG 1 cut(s) 8
PkrI GCNGC 2 cut(s) 233, 236
PscI ACATGT 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 48
PspLI CGTACG 1 cut(s) 8
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
RsaI GTAC 2 cut(s) 10, 150
RsaNI GTAC 2 cut(s) 9, 149
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 232, 235
Sau3AI GATC 1 cut(s) 12
SetI ASST 5 cut(s) 10, 154, 212, 233, 263
SgeI CNNG 8 cut(s) 31, 149, 182, 187, 195, 208, 219, 285
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 2 cut(s) 61, 119
SsiI CCGC 2 cut(s) 199, 234
SspI AATATT 2 cut(s) 52, 106
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 182
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 91
TasI AATT 2 cut(s) 61, 119
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 132
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 173
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.