Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Forward (+)

6949558 .. 6950542

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1100100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTATCACTTTGGAATTCCAACGATTTGTTTAATTGATACAAATTGTGACCCGGATCTCATAGATATTTCGATTCCAACGAATGATGACGCTAAAGCTTCAATCCGATTAATTCTTAACAAATTAGTATTTGCAATTTGGTCAGCCATTATAGCCGTTTGTAATCCACAAACCATTCCTACTGACGGTCATAATTTCTTTGAATATGTCCTTGAATTCATTCGGGACGTGAGCAAAACTCATATTGGAGAAAAATATGGTCCATGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTTGTTTCGAATTGGTCAAGGGCTCTTTTACCTTGGAAAATCATACAGTTACCTCATAGGGAGTTAGCTGCACTCACAAATGATATAAATACTATGGTTGCTTTAGCTTTGCTCACTTCAGTAGCATATTTCTATGCTAGCCTTACAAAAAAAGGATTATGTTATTTCGGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000314 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0031974 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0098798 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S2

Protein Analysis

184

Amino Acids

20.74

Weight (kDa)

6.04

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	4 - 46	8.3e-13	Ribosomal protein S2
ATP-synt_A	PF00119	43 - 183	1.1e-25	ATP synthase A chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	15, 215
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	185, 278
AgsI	TTSAA	4 cut(s)	102, 203, 215, 482
AjiI	CACGTC	1 cut(s)	229
AluBI	AGCT	3 cut(s)	98, 368, 407
AluI	AGCT	3 cut(s)	98, 368, 407
AlwI	GGATC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	2 cut(s)	15, 215
AseI	ATTAAT	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	260
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	53
BmtI	GCTAGC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu14I	TTCGAA	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	263, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 278
BseDI	CCNNGG	2 cut(s)	263, 332
BseLI	CCNNNNNNNGG	2 cut(s)	185, 278
BseXI	GCAGC	1 cut(s)	355
BsgI	GTGCAG	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	185, 278
BsmFI	GGGAC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	270
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	263, 332
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	263, 332
Bst4CI	ACNGT	2 cut(s)	188, 348
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	514, 542
BstDSI	CCRYGG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	98
CviAII	CATG	1 cut(s)	264
CviJI	RGCY	7 cut(s)	98, 146, 155, 323, 368, 407, 441
CviKI_1	RGCY	7 cut(s)	98, 146, 155, 323, 368, 407, 441
DdeI	CTNAG	2 cut(s)	514, 542
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	263, 332
Eco24I	GRGCYC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	15, 215
EcoT14I	CCWWGG	2 cut(s)	263, 332
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	2 cut(s)	263, 332
FaeI	CATG	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	1 cut(s)	369
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	188, 348
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	134, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	514, 542
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	1 cut(s)	66
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	47, 348
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	530
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	9 cut(s)	15, 33, 43, 111, 122, 135, 193, 215, 310
MmeI	TCCRAC	2 cut(s)	44, 101
MnlI	CCTC	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	4 cut(s)	32, 110, 117, 507
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	55
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	47
NspV	TTCGAA	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	32, 110, 117, 507
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	6 cut(s)	100, 231, 334, 355, 370, 409
SfuI	TTCGAA	1 cut(s)	308
SgeI	CNNG	9 cut(s)	64, 65, 224, 236, 241, 276, 330, 345, 450
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	9 cut(s)	15, 33, 43, 111, 122, 135, 193, 215, 310
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	2 cut(s)	263, 332
TaaI	ACNGT	2 cut(s)	188, 348
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	71, 308
TasI	AATT	9 cut(s)	15, 33, 43, 111, 122, 135, 193, 215, 310
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	4 cut(s)	32, 110, 117, 507
Tru9I	TTAA	4 cut(s)	32, 110, 117, 507
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	110
XapI	RAATTY	2 cut(s)	15, 215
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.