RNA polymerase Rpb1, domain 5
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | ATCG00150 |
| malus_domestica | MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1 |
| pyrus_communis | pycom08g10380 |
| rosa_chinensis | RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431 |
| rosa_laevigata | RLG00000004365 RLG00000004453 |
| rosa_rugosa | Rorug02G0490900 |
| rosa_samantha | Rh2BG343800 Rh6AG047100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 492 |
| Acc36I | ACCTGC | 2 cut(s) | 353, 742 |
| AccI | GTMKAC | 1 cut(s) | 425 |
| AccII | CGCG | 1 cut(s) | 781 |
| AclWI | GGATC | 2 cut(s) | 178, 699 |
| AcsI | RAATTY | 2 cut(s) | 208, 651 |
| AcuI | CTGAAG | 1 cut(s) | 120 |
| AcyI | GRCGYC | 1 cut(s) | 753 |
| AgsI | TTSAA | 5 cut(s) | 179, 192, 253, 378, 708 |
| AjiI | CACGTC | 1 cut(s) | 359 |
| AjnI | CCWGG | 1 cut(s) | 687 |
| AluBI | AGCT | 6 cut(s) | 7, 22, 104, 139, 157, 626 |
| AluI | AGCT | 6 cut(s) | 7, 22, 104, 139, 157, 626 |
| Alw26I | GTCTC | 7 cut(s) | 61, 125, 188, 223, 478, 520, 760 |
| AlwI | GGATC | 2 cut(s) | 178, 699 |
| AoxI | GGCC | 1 cut(s) | 34 |
| ApeKI | GCWGC | 1 cut(s) | 771 |
| ApoI | RAATTY | 2 cut(s) | 208, 651 |
| AspS9I | GGNCC | 1 cut(s) | 34 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| BauI | CACGAG | 1 cut(s) | 75 |
| BbsI | GAAGAC | 2 cut(s) | 273, 488 |
| BbvI | GCAGC | 1 cut(s) | 758 |
| BccI | CCATC | 3 cut(s) | 280, 307, 373 |
| BciT130I | CCWGG | 1 cut(s) | 689 |
| BclI | TGATCA | 1 cut(s) | 604 |
| BcoDI | GTCTC | 7 cut(s) | 61, 125, 188, 223, 478, 520, 760 |
| BfaI | CTAG | 1 cut(s) | 56 |
| BfmI | CTRYAG | 1 cut(s) | 429 |
| BfuAI | ACCTGC | 2 cut(s) | 353, 742 |
| BisI | GCNGC | 1 cut(s) | 772 |
| BlsI | GCNGC | 1 cut(s) | 773 |
| Bme1390I | CCNGG | 1 cut(s) | 689 |
| BmgBI | CACGTC | 1 cut(s) | 359 |
| BmgT120I | GGNCC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 1 cut(s) | 12 |
| BmrFI | CCNGG | 1 cut(s) | 689 |
| BpiI | GAAGAC | 2 cut(s) | 273, 488 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 58, 90, 196, 228 |
| BpuEI | CTTGAG | 4 cut(s) | 173, 198, 223, 481 |
| BsaHI | GRCGYC | 1 cut(s) | 753 |
| BseBI | CCWGG | 1 cut(s) | 689 |
| BseGI | GGATG | 1 cut(s) | 133 |
| BseMII | CTCAG | 1 cut(s) | 137 |
| BseRI | GAGGAG | 3 cut(s) | 748, 794, 801 |
| BseXI | GCAGC | 1 cut(s) | 758 |
| BseYI | CCCAGC | 1 cut(s) | 47 |
| Bsh1236I | CGCG | 1 cut(s) | 781 |
| BshFI | GGCC | 1 cut(s) | 36 |
| BslFI | GGGAC | 2 cut(s) | 345, 470 |
| BsmAI | GTCTC | 7 cut(s) | 61, 125, 188, 223, 478, 520, 760 |
| BsmBI | CGTCTC | 1 cut(s) | 760 |
| BsmFI | GGGAC | 2 cut(s) | 345, 470 |
| BsnI | GGCC | 1 cut(s) | 36 |
| Bsp143I | GATC | 4 cut(s) | 170, 265, 604, 691 |
| BspANI | GGCC | 1 cut(s) | 36 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspFNI | CGCG | 1 cut(s) | 781 |
| BspHI | TCATGA | 1 cut(s) | 262 |
| BspLI | GGNNCC | 1 cut(s) | 12 |
| BspMI | ACCTGC | 2 cut(s) | 353, 742 |
| BspPI | GGATC | 2 cut(s) | 178, 699 |
| BspQI | GCTCTTC | 1 cut(s) | 633 |
| BssMI | GATC | 4 cut(s) | 170, 265, 604, 691 |
| BssNAI | GTATAC | 1 cut(s) | 426 |
| BssNI | GRCGYC | 1 cut(s) | 753 |
| BssSI | CACGAG | 1 cut(s) | 75 |
| Bst1107I | GTATAC | 1 cut(s) | 426 |
| Bst2BI | CACGAG | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 1 cut(s) | 689 |
| Bst6I | CTCTTC | 4 cut(s) | 59, 518, 633, 797 |
| BstACI | GRCGYC | 1 cut(s) | 753 |
| BstDEI | CTNAG | 2 cut(s) | 123, 135 |
| BstEII | GGTNACC | 1 cut(s) | 579 |
| BstF5I | GGATG | 1 cut(s) | 133 |
| BstFNI | CGCG | 1 cut(s) | 781 |
| BstKTI | GATC | 4 cut(s) | 173, 268, 607, 694 |
| BstMAI | GTCTC | 7 cut(s) | 61, 125, 188, 223, 478, 520, 760 |
| BstMBI | GATC | 4 cut(s) | 170, 265, 604, 691 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 116 |
| BstNI | CCWGG | 1 cut(s) | 689 |
| BstPI | GGTNACC | 1 cut(s) | 579 |
| BstSCI | CCNGG | 1 cut(s) | 687 |
| BstSFI | CTRYAG | 1 cut(s) | 429 |
| BstUI | CGCG | 1 cut(s) | 781 |
| BstV1I | GCAGC | 1 cut(s) | 758 |
| BstV2I | GAAGAC | 2 cut(s) | 273, 488 |
| BstX2I | RGATCY | 1 cut(s) | 691 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 47 |
| BstYI | RGATCY | 1 cut(s) | 691 |
| BstZ17I | GTATAC | 1 cut(s) | 426 |
| BsuRI | GGCC | 1 cut(s) | 36 |
| BtrI | CACGTC | 1 cut(s) | 359 |
| BtsCI | GGATG | 1 cut(s) | 133 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| BveI | ACCTGC | 2 cut(s) | 353, 742 |
| CciI | TCATGA | 1 cut(s) | 262 |
| Cfr13I | GGNCC | 1 cut(s) | 34 |
| CseI | GACGC | 1 cut(s) | 742 |
| CviAII | CATG | 1 cut(s) | 263 |
| DdeI | CTNAG | 2 cut(s) | 123, 135 |
| DpnI | GATC | 4 cut(s) | 172, 267, 606, 693 |
| DpnII | GATC | 4 cut(s) | 170, 265, 604, 691 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 492 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 492 |
| Eam1104I | CTCTTC | 4 cut(s) | 59, 518, 633, 797 |
| EarI | CTCTTC | 4 cut(s) | 59, 518, 633, 797 |
| Eco57I | CTGAAG | 1 cut(s) | 120 |
| Eco91I | GGTNACC | 1 cut(s) | 579 |
| EcoO65I | GGTNACC | 1 cut(s) | 579 |
| EcoRI | GAATTC | 2 cut(s) | 208, 651 |
| EcoRII | CCWGG | 1 cut(s) | 687 |
| Esp3I | CGTCTC | 1 cut(s) | 760 |
| FaeI | CATG | 1 cut(s) | 266 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 159, 191, 185, 217 |
| FaqI | GGGAC | 2 cut(s) | 345, 470 |
| FatI | CATG | 1 cut(s) | 262 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FbaI | TGATCA | 1 cut(s) | 604 |
| FblI | GTMKAC | 1 cut(s) | 425 |
| Fnu4HI | GCNGC | 1 cut(s) | 772 |
| FokI | GGATG | 1 cut(s) | 140 |
| Fsp4HI | GCNGC | 1 cut(s) | 772 |
| FspBI | CTAG | 1 cut(s) | 56 |
| GluI | GCNGC | 1 cut(s) | 772 |
| GsaI | CCCAGC | 1 cut(s) | 51 |
| HaeIII | GGCC | 1 cut(s) | 36 |
| HgaI | GACGC | 1 cut(s) | 742 |
| Hin1I | GRCGYC | 1 cut(s) | 753 |
| Hin1II | CATG | 1 cut(s) | 266 |
| HincII | GTYRAC | 1 cut(s) | 414 |
| HindII | GTYRAC | 1 cut(s) | 414 |
| HpaI | GTTAAC | 1 cut(s) | 414 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 3 cut(s) | 228, 414, 426 |
| Hpy188III | TCNNGA | 4 cut(s) | 125, 202, 263, 632 |
| Hpy8I | GTNNAC | 3 cut(s) | 228, 414, 426 |
| HpyCH4IV | ACGT | 1 cut(s) | 358 |
| HpyCH4V | TGCA | 3 cut(s) | 110, 348, 544 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 116 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 135 |
| HpySE526I | ACGT | 1 cut(s) | 358 |
| Hsp92I | GRCGYC | 1 cut(s) | 753 |
| Hsp92II | CATG | 1 cut(s) | 266 |
| Ksp22I | TGATCA | 1 cut(s) | 604 |
| KspAI | GTTAAC | 1 cut(s) | 414 |
| Kzo9I | GATC | 4 cut(s) | 170, 265, 604, 691 |
| LguI | GCTCTTC | 1 cut(s) | 633 |
| Lsp1109I | GCAGC | 1 cut(s) | 758 |
| MaeI | CTAG | 1 cut(s) | 56 |
| MaeII | ACGT | 1 cut(s) | 358 |
| MaeIII | GTNAC | 3 cut(s) | 160, 579, 683 |
| MalI | GATC | 4 cut(s) | 172, 267, 606, 693 |
| MboI | GATC | 4 cut(s) | 170, 265, 604, 691 |
| MflI | RGATCY | 1 cut(s) | 691 |
| MluCI | AATT | 8 cut(s) | 29, 208, 418, 530, 651, 669, 679, 708 |
| MmeI | TCCRAC | 1 cut(s) | 680 |
| MnlI | CCTC | 6 cut(s) | 47, 198, 769, 800, 815, 822 |
| MseI | TTAA | 4 cut(s) | 83, 413, 489, 668 |
| MspR9I | CCNGG | 1 cut(s) | 689 |
| MvaI | CCWGG | 1 cut(s) | 689 |
| MvnI | CGCG | 1 cut(s) | 781 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 116 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 4 cut(s) | 170, 265, 604, 691 |
| NlaIII | CATG | 1 cut(s) | 266 |
| NlaIV | GGNNCC | 1 cut(s) | 12 |
| NmuCI | GTSAC | 1 cut(s) | 683 |
| PagI | TCATGA | 1 cut(s) | 262 |
| PciSI | GCTCTTC | 1 cut(s) | 633 |
| PkrI | GCNGC | 1 cut(s) | 773 |
| Psp6I | CCWGG | 1 cut(s) | 687 |
| PspEI | GGTNACC | 1 cut(s) | 579 |
| PspFI | CCCAGC | 1 cut(s) | 47 |
| PspGI | CCWGG | 1 cut(s) | 687 |
| PspN4I | GGNNCC | 1 cut(s) | 12 |
| PspPI | GGNCC | 1 cut(s) | 34 |
| PsuI | RGATCY | 1 cut(s) | 691 |
| SapI | GCTCTTC | 1 cut(s) | 633 |
| SaqAI | TTAA | 4 cut(s) | 83, 413, 489, 668 |
| SatI | GCNGC | 1 cut(s) | 772 |
| Sau3AI | GATC | 4 cut(s) | 170, 265, 604, 691 |
| Sau96I | GGNCC | 1 cut(s) | 34 |
| ScrFI | CCNGG | 1 cut(s) | 689 |
| SfcI | CTRYAG | 1 cut(s) | 429 |
| SmlI | CTYRAG | 4 cut(s) | 152, 202, 213, 460 |
| SmoI | CTYRAG | 4 cut(s) | 152, 202, 213, 460 |
| Sse9I | AATT | 8 cut(s) | 29, 208, 418, 530, 651, 669, 679, 708 |
| SspMI | CTAG | 1 cut(s) | 56 |
| StyD4I | CCNGG | 1 cut(s) | 687 |
| TaiI | ACGT | 1 cut(s) | 361 |
| TaqI | TCGA | 3 cut(s) | 521, 631, 730 |
| TasI | AATT | 8 cut(s) | 29, 208, 418, 530, 651, 669, 679, 708 |
| Tru1I | TTAA | 4 cut(s) | 83, 413, 489, 668 |
| Tru9I | TTAA | 4 cut(s) | 83, 413, 489, 668 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TseFI | GTSAC | 1 cut(s) | 683 |
| TseI | GCWGC | 1 cut(s) | 771 |
| Tsp45I | GTSAC | 1 cut(s) | 683 |
| TspDTI | ATGAA | 3 cut(s) | 17, 251, 434 |
| TspGWI | ACGGA | 1 cut(s) | 482 |
| TspRI | CASTG | 1 cut(s) | 117 |
| XapI | RAATTY | 2 cut(s) | 208, 651 |
| XmiI | GTMKAC | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 56 |