Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Forward (+)

58733554 .. 58741471

Gene Structure 7918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGTTAAAAATTGTATGTTGTGATTTAGTTACAGTGCAAGCACAGAAAGAGACTGCTCCAGACATGCAATGCAAGGACAAGTTTCTCCTTCAGAGTGTAAAAACCAATGAAGGTGCAACTCCAAAGGAGAACTCTAGAAGTGAGGCAGGACATGTGGTTGAGGAGTGCAAATTCAGAGTGGTATATGTTTCTTCACCTCAGCCCCCTTCTTCAGTCCCAGAAAGGTTGGAGGAAGGGTCTTCACCAAGAGCTTCAATAGTGGAGAATGAAAATGTTAATGGTGCTGAGTTTTCCAATAGAATGGCTGAAAATTTGTTGCAGAGTTACTTGGAAGCAGAAACAGAAATCAACGCGCTTACCGAAGCACTTAATGGTGCCAGGCAACGAAAGCGTTTCTTTGAGCAACAGCTAATGGCGACGCCGGTGGTCCTTGTGAGTAATATGGTTGAGATGAATGTCATCGGCGCACTTCGTCACAGAGGATGGATCAATCAAGTTGTAATCAATGCTGCCACTGAAGGTTTAGAAAATGCAATGAATCAGAGAGCTGAAGGATTCGGTGTTCGGATTGCTTTTCATGAGCCTATTCCGGATGTTATTCCTCCTCCACCTGGAGTTCCTCATCCATTTGTTCCCATATTCGCTCCTCTGGGCGGTGCTGTTGGGCAGCGTCCTCCTCTGATGATTCCTGGAGTTGCACCTGTATTTCCTCTCGCCCCCGGTCCTCCACAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

246

Amino Acids

26.66

Weight (kDa)

5.35

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	374
AccII	CGCG	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	589
AciI	CCGC	1 cut(s)	654
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	2 cut(s)	170, 310
AcuI	CTGAAG	4 cut(s)	74, 195, 537, 570
AcyI	GRCGYC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	611, 653
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	255
AjnI	CCWGG	3 cut(s)	377, 610, 688
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	3 cut(s)	251, 409, 548
AluI	AGCT	3 cut(s)	251, 409, 548
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	494
Aor13HI	TCCGGA	1 cut(s)	589
ApeKI	GCWGC	2 cut(s)	509, 667
ApoI	RAATTY	2 cut(s)	170, 310
AspLEI	GCGC	2 cut(s)	355, 467
AspS9I	GGNCC	2 cut(s)	427, 722
AsuC2I	CCSGG	1 cut(s)	720
AsuHPI	GGTGA	2 cut(s)	186, 234
AvaII	GGWCC	2 cut(s)	427, 722
BanI	GGYRCC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	496, 679
BccI	CCATC	1 cut(s)	477
BciT130I	CCWGG	3 cut(s)	379, 612, 690
BcnI	CCSGG	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	510, 668
BlsI	GCNGC	2 cut(s)	511, 669
Bme1390I	CCNGG	4 cut(s)	379, 612, 690, 720
Bme18I	GGWCC	2 cut(s)	427, 722
BmgT120I	GGNCC	2 cut(s)	427, 722
BmiI	GGNNCC	1 cut(s)	376
BmrFI	CCNGG	4 cut(s)	379, 612, 690, 720
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	3 cut(s)	42, 633, 711
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	720
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	718
BsaWI	WCCGGW	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	611, 653
Bse118I	RCCGGY	1 cut(s)	421
Bse3DI	GCAATG	2 cut(s)	74, 540
BseAI	TCCGGA	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	379, 612, 690
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	3 cut(s)	488, 598, 622
BseLI	CCNNNNNNNGG	2 cut(s)	611, 653
BseMI	GCAATG	2 cut(s)	74, 540
BseMII	CTCAG	2 cut(s)	212, 276
BseRI	GAGGAG	4 cut(s)	176, 594, 636, 666
BseXI	GCAGC	2 cut(s)	496, 679
Bsh1236I	CGCG	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	422, 590, 720
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	611, 653
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	200
Bsp13I	TCCGGA	1 cut(s)	589
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	211, 277
BspEI	TCCGGA	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	353
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	494
BspT107I	GGYRCC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	74, 540
BsrFI	RCCGGY	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	1 cut(s)	486
BssNI	GRCGYC	1 cut(s)	419
Bst2UI	CCWGG	3 cut(s)	379, 612, 690
Bst4CI	ACNGT	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	198, 285
BstF5I	GGATG	3 cut(s)	488, 598, 622
BstFNI	CGCG	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	355, 467
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	3 cut(s)	379, 612, 690
BstNSI	RCATGY	2 cut(s)	67, 155
BstSCI	CCNGG	4 cut(s)	377, 610, 688, 718
BstUI	CGCG	1 cut(s)	353
BstV1I	GCAGC	2 cut(s)	496, 679
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	488, 598, 622
BtsIMutI	CAGTG	2 cut(s)	39, 513
Cac8I	GCNNGC	1 cut(s)	39
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	355, 467
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	427, 722
CseI	GACGC	2 cut(s)	427, 659
CviAII	CATG	3 cut(s)	64, 152, 578
CviJI	RGCY	6 cut(s)	202, 251, 305, 409, 548, 583
CviKI_1	RGCY	6 cut(s)	202, 251, 305, 409, 548, 583
DdeI	CTNAG	2 cut(s)	198, 285
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	427, 722
Eco57I	CTGAAG	4 cut(s)	74, 195, 537, 570
EcoRII	CCWGG	3 cut(s)	377, 610, 688
FaeI	CATG	3 cut(s)	67, 155, 581
FaiI	YATR	9 cut(s)	16, 65, 153, 184, 186, 443, 579, 638, 736
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	63, 151, 577
Fnu4HI	GCNGC	2 cut(s)	510, 668
FokI	GGATG	3 cut(s)	495, 605, 609
Fsp4HI	GCNGC	2 cut(s)	510, 668
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	2 cut(s)	354, 466
GluI	GCNGC	2 cut(s)	510, 668
GsuI	CTGGAG	3 cut(s)	42, 633, 711
HapII	CCGG	3 cut(s)	422, 590, 720
HgaI	GACGC	2 cut(s)	427, 659
HhaI	GCGC	2 cut(s)	355, 467
Hin1I	GRCGYC	1 cut(s)	419
Hin1II	CATG	3 cut(s)	67, 155, 581
Hin6I	GCGC	2 cut(s)	353, 465
HinP1I	GCGC	2 cut(s)	353, 465
HinfI	GANTC	3 cut(s)	538, 555, 685
HpaII	CCGG	3 cut(s)	422, 590, 720
HphI	GGTGA	2 cut(s)	186, 234
Hpy188I	TCNGA	5 cut(s)	93, 176, 543, 567, 681
Hpy188III	TCNNGA	4 cut(s)	59, 135, 578, 590
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	6 cut(s)	98, 104, 216, 227, 512, 545
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	8 cut(s)	37, 67, 72, 116, 168, 319, 533, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	198, 285
Hsp92I	GRCGYC	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	67, 155, 581
HspAI	GCGC	2 cut(s)	353, 465
Kpn2I	TCCGGA	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	61, 649
Lsp1109I	GCAGC	2 cut(s)	496, 679
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	28, 323, 473
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	3 cut(s)	183, 201, 231
MluCI	AATT	3 cut(s)	9, 170, 310
MmeI	TCCRAC	1 cut(s)	207
MroI	TCCGGA	1 cut(s)	589
MseI	TTAA	3 cut(s)	5, 276, 369
MspI	CCGG	3 cut(s)	422, 590, 720
MspR9I	CCNGG	4 cut(s)	379, 612, 690, 720
MvaI	CCWGG	3 cut(s)	379, 612, 690
MvnI	CGCG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	720
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	3 cut(s)	67, 155, 581
NlaIV	GGNNCC	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	2 cut(s)	67, 155
PagI	TCATGA	1 cut(s)	577
PciI	ACATGT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	538, 555, 685
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	2 cut(s)	511, 669
PscI	ACATGT	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	377, 610, 688
PspGI	CCWGG	3 cut(s)	377, 610, 688
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	427, 722
SaqAI	TTAA	3 cut(s)	5, 276, 369
SatI	GCNGC	2 cut(s)	510, 668
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	2 cut(s)	427, 722
ScrFI	CCNGG	4 cut(s)	379, 612, 690, 720
SetI	ASST	9 cut(s)	115, 199, 227, 253, 411, 523, 550, 613, 703
SgrAI	CRCCGGYG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	427, 722
Sse9I	AATT	3 cut(s)	9, 170, 310
SsiI	CCGC	1 cut(s)	654
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	377, 610, 688, 718
TaaI	ACNGT	1 cut(s)	34
TasI	AATT	3 cut(s)	9, 170, 310
TfiI	GAWTC	3 cut(s)	538, 555, 685
Tru1I	TTAA	3 cut(s)	5, 276, 369
Tru9I	TTAA	3 cut(s)	5, 276, 369
TscAI	CASTG	2 cut(s)	39, 520
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	2 cut(s)	509, 667
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	5 cut(s)	123, 282, 467, 551, 566
TspRI	CASTG	2 cut(s)	39, 520
VpaK11BI	GGWCC	2 cut(s)	427, 722
XapI	RAATTY	2 cut(s)	170, 310
XbaI	TCTAGA	1 cut(s)	134
XceI	RCATGY	2 cut(s)	67, 155
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.