Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017493

Physical Location & Seq

Genomic Coordinates Forward (+)

97790 .. 99237

Gene Structure 1448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAATGTTCTATTATGTTCTATCAAAACACTAAAAGGTTTATACGATATATCCGGTGTGGAGGTAGGCCAACATTTCTATTGGCAAATAGGAAGTTTCCAAGTCCATGCCCAAGTACTTATTACTTCTTGGGTCGTAATTGCTATTTTATTAGGTTCAGCCATTATAGCTGTTCGTAATCCACAAACCATTCCTACAGACGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATTCGAGACGTGAGCAAAACTCAAATTGGAGAAGAATATGGTCCATGGGTTCCCTTTATTGGAACTATGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTACCCTGGAAAATTATACAGTTACCTCATGGGGAGTTAGCCGCACCCACAAATGATATAAACACGACCGTTGCTTTAGCTTTACTCACGTCAGTAGCATATTTTTATGCGGGCCTTTCAAAAAAGGGATTGAGTTATTTCGGTAAATATATTCAACCAACCCCAATCCTTTTACCTATTAACATCTTAGAAGATTTCACAAAACCGTTATCGCTTAGTTTTCGACTTTTCGGAAATATTTTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCTTTAGTACCTTTAGTAGTTCCTATACCTGTCATGTTCCTTGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCAACCCTAGCTGCGGCTTATATAGGCGAATCCATGGAAGGTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031976 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0042623 GO:0042625 GO:0042626 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0044769 GO:0045259 GO:0045263 GO:0046933 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098807 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 ko00195 ko01100 map00190 map00195 map01100

Pfam Domains

Protein Families

ATP-synt_A

Protein Analysis

247

Amino Acids

27.21

Weight (kDa)

5.45

Isoelectric Point (pI)

21.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_A	PF00119	41 - 239	1.2e-49	ATP synthase A chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00150
malus_domestica	MD02G1261800.v1.1 MD16G1100100.v1.1 MD16G1263300.v1.1
pyrus_communis	pycom08g10380
rosa_chinensis	RchiOBHm_Chr2g0129011 RchiOBHm_CPg0502431
rosa_laevigata	RLG00000004365 RLG00000004453
rosa_rugosa	Rorug02G0490900
rosa_samantha	Rh2BG343800 Rh6AG047100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	384, 452, 672, 707
AcsI	RAATTY	2 cut(s)	208, 230
AfaI	GTAC	2 cut(s)	117, 624
AfiI	CCNNNNNNNGG	3 cut(s)	200, 293, 706
AgsI	TTSAA	5 cut(s)	218, 230, 462, 497, 680
AjiI	CACGTC	2 cut(s)	244, 432
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	5 cut(s)	170, 422, 587, 683, 704
AluI	AGCT	5 cut(s)	170, 422, 587, 683, 704
Alw26I	GTCTC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	67, 454
ApeKI	GCWGC	1 cut(s)	704
ApoI	RAATTY	2 cut(s)	208, 230
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	275, 454
AsuII	TTCGAA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	691
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	701
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	3 cut(s)	384, 705, 708
BlsI	GCNGC	3 cut(s)	385, 706, 709
BmcAI	AGTACT	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	349
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	2 cut(s)	244, 432
BmgT120I	GGNCC	2 cut(s)	275, 454
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	349
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu14I	TTCGAA	1 cut(s)	323
BsaJI	CCNNGG	4 cut(s)	278, 347, 655, 726
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 293, 706
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	4 cut(s)	278, 347, 655, 726
BseLI	CCNNNNNNNGG	3 cut(s)	200, 293, 706
BseXI	GCAGC	1 cut(s)	691
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	69, 456
BsiEI	CGRYCG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	200, 293, 706
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	69, 456
Bsp119I	TTCGAA	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp19I	CCATGG	2 cut(s)	278, 726
BspACI	CCGC	4 cut(s)	384, 452, 672, 707
BspANI	GGCC	2 cut(s)	69, 456
BspLI	GGNNCC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	323
BssECI	CCNNGG	4 cut(s)	278, 347, 655, 726
BssT1I	CCWWGG	3 cut(s)	278, 655, 726
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	4 cut(s)	203, 363, 412, 549
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	529, 557
BstDSI	CCRYGG	2 cut(s)	278, 726
BstMAI	GTCTC	1 cut(s)	234
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 701
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	69, 456
BtgI	CCRYGG	2 cut(s)	278, 726
BtrI	CACGTC	2 cut(s)	244, 432
Cac8I	GCNNGC	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	275, 454
Csp6I	GTAC	2 cut(s)	116, 623
CviAII	CATG	5 cut(s)	107, 279, 371, 649, 727
CviQI	GTAC	2 cut(s)	116, 623
DdeI	CTNAG	2 cut(s)	529, 557
Eco130I	CCWWGG	3 cut(s)	278, 655, 726
Eco24I	GRGCYC	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	3 cut(s)	278, 655, 726
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	3 cut(s)	278, 655, 726
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	5 cut(s)	110, 282, 374, 652, 730
FatI	CATG	5 cut(s)	106, 278, 370, 648, 726
FauI	CCCGC	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	384, 705, 708
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	384, 705, 708
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	3 cut(s)	384, 705, 708
HaeIII	GGCC	2 cut(s)	69, 456
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	5 cut(s)	110, 282, 374, 652, 730
HinfI	GANTC	1 cut(s)	722
HpaII	CCGG	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	207, 575
Hpy188III	TCNNGA	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	4 cut(s)	203, 363, 412, 549
HpyCH4IV	ACGT	2 cut(s)	243, 431
HpyCH4V	TGCA	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 701
HpyF3I	CTNAG	2 cut(s)	529, 557
HpySE526I	ACGT	2 cut(s)	243, 431
Hsp92II	CATG	5 cut(s)	110, 282, 374, 652, 730
LpnPI	CCDG	5 cut(s)	67, 318, 334, 361, 657
Lsp1109I	GCAGC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	2 cut(s)	243, 431
MaeIII	GTNAC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	278, 545
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	7 cut(s)	138, 208, 230, 258, 325, 354, 593
MnlI	CCTC	2 cut(s)	55, 378
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	522
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	167, 701
NcoI	CCATGG	2 cut(s)	278, 726
NlaIII	CATG	5 cut(s)	110, 282, 374, 652, 730
NlaIV	GGNNCC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	722
PkrI	GCNGC	3 cut(s)	385, 706, 709
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	275, 454
PsrI	GAACNNNNNNTAC	2 cut(s)	591, 623
RsaI	GTAC	2 cut(s)	117, 624
RsaNI	GTAC	2 cut(s)	116, 623
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	384, 705, 708
Sau96I	GGNCC	2 cut(s)	275, 454
ScaI	AGTACT	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	195
SfuI	TTCGAA	1 cut(s)	323
SinI	GGWCC	1 cut(s)	275
Sse9I	AATT	7 cut(s)	138, 208, 230, 258, 325, 354, 593
SsiI	CCGC	4 cut(s)	384, 452, 672, 707
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	3 cut(s)	278, 655, 726
TaaI	ACNGT	4 cut(s)	203, 363, 412, 549
TaiI	ACGT	2 cut(s)	246, 434
TaqI	TCGA	3 cut(s)	238, 323, 565
TasI	AATT	7 cut(s)	138, 208, 230, 258, 325, 354, 593
TatI	WGTACW	1 cut(s)	115
TauI	GCSGC	2 cut(s)	386, 710
TfiI	GAWTC	1 cut(s)	722
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TseI	GCWGC	1 cut(s)	704
TspDTI	ATGAA	3 cut(s)	17, 223, 606
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	208, 230
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	701
ZrmI	AGTACT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.