Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003056

Physical Location & Seq

Genomic Coordinates Forward (+)

16367 .. 19435

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00020.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGGGTCTGGCGCAGATTGGGTACGATAACGAAAGCTCAAGGCTTGTATTCGACGACGACGTTCTCATCGTCATGGTCGATCCCTCTCGGTCTCGGTCGCCCGCTGTCTTCTGCAGCCAATGTAAACGCGCAGGCTGAAATAATGAACGGAAAGCCAATCGCCAAAGACATAAGGTCCAGAGTAGCTGCTGAAATATGCAGACTGAAGGCTGCCACAGGAAGACTGCCCGGATTGGCGGTTGTTTTGCTGCCCCAAGACTGTACTCAAGATCGACTTATTGATGTCGTTTCATCTTTTAACCGGAACCCCTCGGTGCATGGTATAATTGTGCAGCTCCCTCTTCCACAGCATTTAGACGAGGAAAAGATTATAAATTTTGTTAGTCCAGAAAAAGATGTGGATGGGTTTCATCCCCTCAACATGGGGAATCTTGCCATGCGGGGAAGGGAACCCTTATTTATCCCTTGTGCCCCCAAGGCTTGCATTGAATTGTTGCTCCGATATGGTGTGGAGATTATTGGGAAGAATGCAGTGGTTATAGGGAGAAGCAAGATTGTTGGGTTATCAACTTCGTTGCTATTGCAGGTGACACAAATTAATCTGCTTTACTGTACAATTTGTTTCATTTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

213

Amino Acids

23.13

Weight (kDa)

9.3

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	29 - 144	1.4e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	165 - 313	4.3e-50	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003056)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020
malus_domestica	MD03G1140500.v1.1
prunus_persica	Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1
pyrus_communis	pycom03g09560
rosa_chinensis	RchiOBHm_Chr2g0084241
rosa_laevigata	RLG00000015602
rosa_multiflora	Rmu_sc0003129.1_g000019
rosa_roxburghii	Rroxscaffold_2G00156220
rosa_rugosa	Rorug01G0452000
rosa_samantha	Rh2AG000400 Rh2BG000300 Rh2CG000200 Rh2DG000400
rosa_wichuraiana	Rw2G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AccII	CGCG	1 cut(s)	131
AciI	CCGC	3 cut(s)	104, 239, 442
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	227
AfaI	GTAC	3 cut(s)	25, 265, 616
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	491, 635
AhdI	GACNNNNNGTC	1 cut(s)	175
AluBI	AGCT	3 cut(s)	38, 188, 337
AluI	AGCT	3 cut(s)	38, 188, 337
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	5 cut(s)	116, 188, 212, 250, 334
ApoI	RAATTY	1 cut(s)	376
AseI	ATTAAT	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	15, 133
AspS9I	GGNCC	1 cut(s)	177
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	475
BbsI	GAAGAC	2 cut(s)	102, 229
BbvI	GCAGC	5 cut(s)	128, 175, 199, 237, 346
BccI	CCATC	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	577
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	5 cut(s)	117, 189, 213, 251, 335
BlsI	GCNGC	5 cut(s)	118, 190, 214, 252, 336
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	177
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	308, 453
BmrFI	CCNGG	1 cut(s)	231
BpiI	GAAGAC	2 cut(s)	102, 229
BpuEI	CTTGAG	2 cut(s)	24, 252
BpuMI	CCSGG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	312, 477
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
BseDI	CCNNGG	2 cut(s)	312, 477
BseGI	GGATG	2 cut(s)	409, 412
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	5 cut(s)	128, 175, 199, 237, 346
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	231, 304
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	535
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	2 cut(s)	81, 271
BspACI	CCGC	3 cut(s)	104, 239, 442
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	308, 453
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	614
BssECI	CCNNGG	2 cut(s)	312, 477
BssMI	GATC	2 cut(s)	81, 271
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	263, 614
Bst6I	CTCTTC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	614
BstC8I	GCNNGC	3 cut(s)	104, 135, 484
BstF5I	GGATG	2 cut(s)	409, 412
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	15, 133
BstKTI	GATC	2 cut(s)	84, 274
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	2 cut(s)	81, 271
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	5 cut(s)	128, 175, 199, 237, 346
BstV2I	GAAGAC	2 cut(s)	102, 229
BtsCI	GGATG	2 cut(s)	409, 412
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	104, 135, 484
CfoI	GCGC	2 cut(s)	15, 133
Cfr13I	GGNCC	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	24, 264, 615
CviAII	CATG	4 cut(s)	75, 320, 424, 439
CviJI	RGCY	9 cut(s)	38, 45, 119, 137, 157, 188, 212, 337, 482
CviKI_1	RGCY	9 cut(s)	38, 45, 119, 137, 157, 188, 212, 337, 482
CviQI	GTAC	3 cut(s)	24, 264, 615
DpnI	GATC	2 cut(s)	83, 273
DpnII	GATC	2 cut(s)	81, 271
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	348
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	4 cut(s)	78, 323, 427, 442
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FatI	CATG	4 cut(s)	74, 319, 423, 438
FauI	CCCGC	2 cut(s)	111, 435
Fnu4HI	GCNGC	5 cut(s)	117, 189, 213, 251, 335
FokI	GGATG	2 cut(s)	399, 416
Fsp4HI	GCNGC	5 cut(s)	117, 189, 213, 251, 335
GlaI	GCGC	2 cut(s)	14, 132
GluI	GCNGC	5 cut(s)	117, 189, 213, 251, 335
HapII	CCGG	2 cut(s)	231, 304
HhaI	GCGC	2 cut(s)	15, 133
Hin1II	CATG	4 cut(s)	78, 323, 427, 442
Hin6I	GCGC	2 cut(s)	13, 131
HinP1I	GCGC	2 cut(s)	13, 131
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	231, 304
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	503
Hpy188III	TCNNGA	3 cut(s)	180, 269, 389
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	3 cut(s)	58, 61, 64
HpyAV	CCTTC	2 cut(s)	202, 441
HpyCH4III	ACNGT	2 cut(s)	263, 614
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	7 cut(s)	116, 201, 319, 334, 486, 533, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	4 cut(s)	78, 323, 427, 442
HspAI	GCGC	2 cut(s)	13, 131
Kzo9I	GATC	2 cut(s)	81, 271
LmnI	GCTCC	2 cut(s)	342, 504
LpnPI	CCDG	7 cut(s)	119, 193, 204, 244, 317, 402, 572
Lsp1109I	GCAGC	5 cut(s)	128, 175, 199, 237, 346
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	2 cut(s)	83, 273
MboI	GATC	2 cut(s)	81, 271
MboII	GAAGA	4 cut(s)	102, 234, 335, 538
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	5 cut(s)	327, 376, 491, 597, 618
MnlI	CCTC	5 cut(s)	96, 322, 351, 355, 428
MseI	TTAA	2 cut(s)	300, 600
MslI	CAYNNNNRTG	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	2 cut(s)	231, 304
MspR9I	CCNGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	81, 271
NlaIII	CATG	4 cut(s)	78, 323, 427, 442
NlaIV	GGNNCC	2 cut(s)	308, 453
NmuCI	GTSAC	1 cut(s)	589
PaqCI	CACCTGC	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	3 cut(s)	59, 68, 77
PctI	GAATGC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	5 cut(s)	118, 190, 214, 252, 336
PshBI	ATTAAT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	308, 453
PspPI	GGNCC	1 cut(s)	177
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	25, 265, 616
RsaNI	GTAC	3 cut(s)	24, 264, 615
RseI	CAYNNNNRTG	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	300, 600
SatI	GCNGC	5 cut(s)	117, 189, 213, 251, 335
Sau3AI	GATC	2 cut(s)	81, 271
Sau96I	GGNCC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	475
SetI	ASST	6 cut(s)	40, 65, 179, 190, 339, 591
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	39, 267
SmoI	CTYRAG	2 cut(s)	39, 267
Sse9I	AATT	5 cut(s)	327, 376, 491, 597, 618
SsiI	CCGC	3 cut(s)	104, 239, 442
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	263, 614
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	53, 80, 274
TaqII	GACCGA	2 cut(s)	80, 86
TasI	AATT	5 cut(s)	327, 376, 491, 597, 618
TatI	WGTACW	2 cut(s)	263, 614
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	300, 600
Tru9I	TTAA	2 cut(s)	300, 600
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	5 cut(s)	116, 188, 212, 250, 334
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	4 cut(s)	161, 282, 401, 616
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	177
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.