Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0003056

Physical Location & Seq

Genomic Coordinates Forward (+)

8166974 .. 8169602

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGTGGGCGTCTGCCACAGATTTCGTACCAAAGCCAGAGCCTTGTTTTCAGCGAAGCTGTCACCGTCATGTTCAAGCCCTCTCATTCTCCCTTCCGTCCGGAGACCCACCCAAACCGCCCACCGTCTCCTCTCCAGCGGCGTCCACCCAGGTACGAGAAGTGCTGAAATTATGAGCGGAAAGCCGATTGCAAAGGACATAAAATCAAAGGTAGCTTCTGAAATAAGTAGAATGAAAGCTGCCATTGGAAGCGTTCCTGGGTTGGCTGTGGTTTTGGCGGGCAACAGAGAGGACTCCCAAGCTTTTGTCAATACAAAGTTAAAGGCTTGTAATGAAGTTGGGATTGAAACTTCCATTGTGCAGTTGCCCCAAGATTGTTCTCAAAATCGGCTTATTGATGTAGTTTCGGGTTTTAACAAGAACCCGTCTGTGCACGGTATAATTGTTCAACTCCCTCTGCCACAGCATTTGGACGAGGAAAGGGTTATAAATTTCGTTAGTCCGGAAAAAGATGTGGATGGCTTTCATCCCCTTAATATGGGGAACCTTGCATTGCGGGGAAAGGAGCCGTTGTTCATTCCTTGTGCTCCTAAGGCTTGCATAGAGTTGTTGCTCCGGTATGGAGTTGAGATCGTTGGGAAGAATGCGGTGGTAATTGGGAGAAGCAAGATTGCGGGATTATCCACTTCATTGCTGTTGCAGAGGCACCATGCAACTGTTTGTACTGTCCATTCATTCACTAACAACCCAGAACAAATTACTCGTCGAGCTGATATTGTTGTCTCAGATGTTGGCATTCCAAATATAGTCGGATGCGATTGGCTGATGCCAAGGGCAGTTGTAGTCGATATGGGGACAAATTCAGTAAAGGATCCTAGTAGCAGGCGAGGTTTCCGTATCACCGGAGATGTGTGCTATGAAGAGGCAGTTAAAGTGGTGTCGGCCATAACACCCGTGCCAGGAGGGGTCGGACCTGTTGTAATCTCAATGCTCCTCTCCAACATCCTTGACTCCGCAAAGCGAGCTTTTGGATTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

347

Amino Acids

37.13

Weight (kDa)

9.44

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	58 - 173	4.5e-39	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	194 - 342	4.8e-47	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003056)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020
malus_domestica	MD03G1140500.v1.1
prunus_persica	Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1
pyrus_communis	pycom03g09560
rosa_chinensis	RchiOBHm_Chr2g0084241
rosa_laevigata	RLG00000015602
rosa_multiflora	Rmu_sc0003129.1_g000019
rosa_roxburghii	Rroxscaffold_2G00156220
rosa_rugosa	Rorug01G0452000
rosa_samantha	Rh2AG000400 Rh2BG000300 Rh2CG000200 Rh2DG000400
rosa_wichuraiana	Rw2G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccB1I	GGYRCC	1 cut(s)	705
AccBSI	CCGCTC	1 cut(s)	177
AccIII	TCCGGA	2 cut(s)	99, 502
AciI	CCGC	8 cut(s)	117, 138, 177, 278, 556, 647, 674, 1014
AclWI	GGATC	2 cut(s)	866, 879
AcoI	YGGCCR	1 cut(s)	942
AcsI	RAATTY	2 cut(s)	490, 859
AcyI	GRCGYC	2 cut(s)	9, 141
AfaI	GTAC	3 cut(s)	28, 154, 724
AfiI	CCNNNNNNNGG	2 cut(s)	538, 959
AgsI	TTSAA	3 cut(s)	75, 347, 449
AjnI	CCWGG	3 cut(s)	148, 256, 958
AloI	GAACNNNNNNTCC	2 cut(s)	557, 589
AluBI	AGCT	6 cut(s)	58, 215, 239, 302, 770, 1025
AluI	AGCT	6 cut(s)	58, 215, 239, 302, 770, 1025
Alw21I	GWGCWC	2 cut(s)	435, 589
Alw26I	GTCTC	3 cut(s)	97, 131, 787
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	2 cut(s)	866, 879
Aor13HI	TCCGGA	2 cut(s)	99, 502
AoxI	GGCC	1 cut(s)	942
ApaLI	GTGCAC	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	2 cut(s)	490, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	748, 780
AspS9I	GGNCC	1 cut(s)	971
AsuHPI	GGTGA	2 cut(s)	54, 892
AvaII	GGWCC	1 cut(s)	971
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	435
BamHI	GGATCC	1 cut(s)	871
BanI	GGYRCC	1 cut(s)	705
Bbv12I	GWGCWC	2 cut(s)	435, 589
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	3 cut(s)	150, 258, 960
BcoDI	GTCTC	3 cut(s)	97, 131, 787
BfaI	CTAG	1 cut(s)	876
BisI	GCNGC	2 cut(s)	139, 240
BlsI	GCNGC	2 cut(s)	140, 241
Bme1390I	CCNGG	3 cut(s)	150, 258, 960
Bme18I	GGWCC	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	4 cut(s)	545, 567, 707, 873
BmrFI	CCNGG	3 cut(s)	150, 258, 960
BmsI	GCATC	2 cut(s)	803, 816
BpmI	CTGGAG	1 cut(s)	118
BsaHI	GRCGYC	2 cut(s)	9, 141
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	148, 257, 830
BsaWI	WCCGGW	4 cut(s)	99, 502, 615, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 959
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	551, 689
BseAI	TCCGGA	2 cut(s)	99, 502
BseBI	CCWGG	3 cut(s)	150, 258, 960
BseDI	CCNNGG	3 cut(s)	148, 257, 830
BseGI	GGATG	4 cut(s)	523, 526, 818, 1002
BseLI	CCNNNNNNNGG	2 cut(s)	538, 959
BseMI	GCAATG	2 cut(s)	551, 689
BseMII	CTCAG	1 cut(s)	798
BseRI	GAGGAG	2 cut(s)	119, 983
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	944
BshNI	GGYRCC	1 cut(s)	705
BsiHKAI	GWGCWC	2 cut(s)	435, 589
BsiSI	CCGG	4 cut(s)	100, 503, 616, 903
BslFI	GGGAC	1 cut(s)	868
BslI	CCNNNNNNNGG	2 cut(s)	538, 959
BsmAI	GTCTC	3 cut(s)	97, 131, 787
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	868
BsmI	GAATGC	2 cut(s)	649, 795
BsnI	GGCC	1 cut(s)	944
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	435, 589
Bsp13I	TCCGGA	2 cut(s)	99, 502
Bsp143I	GATC	2 cut(s)	630, 871
BspACI	CCGC	8 cut(s)	117, 138, 177, 278, 556, 647, 674, 1014
BspANI	GGCC	1 cut(s)	944
BspCNI	CTCAG	1 cut(s)	797
BspEI	TCCGGA	2 cut(s)	99, 502
BspLI	GGNNCC	4 cut(s)	545, 567, 707, 873
BspPI	GGATC	2 cut(s)	866, 879
BspT107I	GGYRCC	1 cut(s)	705
BspTNI	GGTCTC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	177
BsrDI	GCAATG	2 cut(s)	551, 689
BssECI	CCNNGG	3 cut(s)	148, 257, 830
BssMI	GATC	2 cut(s)	630, 871
BssNI	GRCGYC	2 cut(s)	9, 141
BssT1I	CCWWGG	1 cut(s)	830
Bst2UI	CCWGG	3 cut(s)	150, 258, 960
Bst4CI	ACNGT	5 cut(s)	66, 125, 437, 718, 727
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	2 cut(s)	9, 141
BstC8I	GCNNGC	4 cut(s)	280, 598, 884, 1023
BstDEI	CTNAG	2 cut(s)	591, 784
BstF5I	GGATG	4 cut(s)	523, 526, 818, 1002
BstKTI	GATC	2 cut(s)	633, 874
BstMAI	GTCTC	3 cut(s)	97, 131, 787
BstMBI	GATC	2 cut(s)	630, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 1022
BstNI	CCWGG	3 cut(s)	150, 258, 960
BstSCI	CCNGG	3 cut(s)	148, 256, 958
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	944
BtsCI	GGATG	4 cut(s)	523, 526, 818, 1002
Cac8I	GCNNGC	4 cut(s)	280, 598, 884, 1023
Cfr13I	GGNCC	1 cut(s)	971
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	27, 153, 723
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	2 cut(s)	69, 710
CviQI	GTAC	3 cut(s)	27, 153, 723
DdeI	CTNAG	2 cut(s)	591, 784
DpnI	GATC	2 cut(s)	632, 873
DpnII	GATC	2 cut(s)	630, 871
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	830
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	971
Eco81I	CCTNAGG	1 cut(s)	591
EcoRII	CCWGG	3 cut(s)	148, 256, 958
EcoT14I	CCWWGG	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	830
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	2 cut(s)	72, 713
FaqI	GGGAC	1 cut(s)	868
FatI	CATG	2 cut(s)	68, 709
FauI	CCCGC	3 cut(s)	271, 549, 667
Fnu4HI	GCNGC	2 cut(s)	139, 240
FokI	GGATG	4 cut(s)	513, 530, 825, 989
Fsp4HI	GCNGC	2 cut(s)	139, 240
FspBI	CTAG	1 cut(s)	876
GluI	GCNGC	2 cut(s)	139, 240
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	944
HapII	CCGG	4 cut(s)	100, 503, 616, 903
HgaI	GACGC	1 cut(s)	130
Hin1I	GRCGYC	2 cut(s)	9, 141
Hin1II	CATG	2 cut(s)	72, 713
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	2 cut(s)	293, 1010
HpaII	CCGG	4 cut(s)	100, 503, 616, 903
HphI	GGTGA	2 cut(s)	54, 892
Hpy166II	GTNNAC	2 cut(s)	145, 433
Hpy188I	TCNGA	4 cut(s)	220, 787, 812, 971
Hpy188III	TCNNGA	2 cut(s)	100, 503
Hpy8I	GTNNAC	2 cut(s)	145, 433
Hpy99I	CGWCG	1 cut(s)	768
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	5 cut(s)	66, 125, 437, 718, 727
HpyCH4V	TGCA	7 cut(s)	191, 361, 433, 551, 600, 700, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 1022
HpyF3I	CTNAG	2 cut(s)	591, 784
Hsp92I	GRCGYC	2 cut(s)	9, 141
Hsp92II	CATG	2 cut(s)	72, 713
Kpn2I	TCCGGA	2 cut(s)	99, 502
Kzo9I	GATC	2 cut(s)	630, 871
LmnI	GCTCC	4 cut(s)	565, 592, 618, 996
Lsp1109I	GCAGC	1 cut(s)	226
LweI	GCATC	2 cut(s)	803, 816
MaeI	CTAG	1 cut(s)	876
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	2 cut(s)	632, 873
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	2 cut(s)	630, 871
MboII	GAAGA	2 cut(s)	652, 932
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	2 cut(s)	435, 589
MluCI	AATT	6 cut(s)	168, 441, 490, 654, 756, 859
MlyI	GAGTC	2 cut(s)	287, 1004
MmeI	TCCRAC	3 cut(s)	790, 949, 1023
MroI	TCCGGA	2 cut(s)	99, 502
MseI	TTAA	4 cut(s)	320, 414, 534, 930
MslI	CAYNNNNRTG	1 cut(s)	67
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	4 cut(s)	100, 503, 616, 903
MspR9I	CCNGG	3 cut(s)	150, 258, 960
Mva1269I	GAATGC	2 cut(s)	649, 795
MvaI	CCWGG	3 cut(s)	150, 258, 960
MwoI	GCNNNNNNNGC	2 cut(s)	593, 1022
NdeII	GATC	2 cut(s)	630, 871
NlaIII	CATG	2 cut(s)	72, 713
NlaIV	GGNNCC	4 cut(s)	545, 567, 707, 873
NmuCI	GTSAC	1 cut(s)	60
PctI	GAATGC	2 cut(s)	649, 795
PkrI	GCNGC	2 cut(s)	140, 241
PleI	GAGTC	2 cut(s)	287, 1004
PpsI	GAGTC	2 cut(s)	287, 1004
PsiI	TTATAA	1 cut(s)	488
Psp6I	CCWGG	3 cut(s)	148, 256, 958
PspGI	CCWGG	3 cut(s)	148, 256, 958
PspN4I	GGNNCC	4 cut(s)	545, 567, 707, 873
PspPI	GGNCC	1 cut(s)	971
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	3 cut(s)	28, 154, 724
RsaNI	GTAC	3 cut(s)	27, 153, 723
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	4 cut(s)	320, 414, 534, 930
SatI	GCNGC	2 cut(s)	139, 240
Sau3AI	GATC	2 cut(s)	630, 871
Sau96I	GGNCC	1 cut(s)	971
SchI	GAGTC	2 cut(s)	287, 1004
ScrFI	CCNGG	3 cut(s)	150, 258, 960
SduI	GDGCHC	2 cut(s)	435, 589
SfaNI	GCATC	2 cut(s)	803, 816
SinI	GGWCC	1 cut(s)	971
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	6 cut(s)	168, 441, 490, 654, 756, 859
SsiI	CCGC	8 cut(s)	117, 138, 177, 278, 556, 647, 674, 1014
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	3 cut(s)	148, 256, 958
StyI	CCWWGG	1 cut(s)	830
TaaI	ACNGT	5 cut(s)	66, 125, 437, 718, 727
TaqI	TCGA	2 cut(s)	766, 846
TasI	AATT	6 cut(s)	168, 441, 490, 654, 756, 859
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	1 cut(s)	141
Tru1I	TTAA	4 cut(s)	320, 414, 534, 930
Tru9I	TTAA	4 cut(s)	320, 414, 534, 930
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	7 cut(s)	248, 348, 515, 565, 678, 723, 933
TspGWI	ACGGA	2 cut(s)	85, 884
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	971
XapI	RAATTY	2 cut(s)	490, 859
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.