Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003056

Physical Location & Seq

Genomic Coordinates Reverse (-)

92720571 .. 92723120

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00156220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAAAAAGAAAAACTCGATCGAGTTAATAGGGGTCTGGCGCAGATTGGGTACAAAAGCTGAAGTCTTGTATTCGACGACGTTCTCATCGTCATGGTCGACCCCTCTCGGTCTCAGTCGCCCGCTGTCTTCTGCAGTCAGTGGTAATGGACAGGCTGAAATAATGAGCGGAAAGCCAATCCCAAAAGACATAAGGTCCAGAGTAGCTGCTGAAATATGCAGAATGAAGGCTGCCACAGGAAGACTGCCTGGATTGGCTGTTGTTTTGGTGGGTAACAGAAAGGATTCACACACTTATGTCCATCTCAAGTTAAAAGCTTGCAATCAAGTCGGAATAGTGACTTCTATTGTTCAACTGCCCCAAGACTGTACTGAAACTCGACTTATTGATGTTGTTTCATCTTTTAACCAGAACCCGTCGGTGCACGGTATAATTGTGCAGCTCCCTCTTCCACAGCATTTAGACGAGGAAAAGATTATAAATTTTGTTAGTCCAGAAAAAGATGTGGATGGCTTTCATCCCCTCAACACGGGGAATCTTGCCATGCGGGGAAGGGAACCCTTATTTATCCCTTGTGCCCCTAAGGCTTGCATTGAATTGTTGCTCCGATATGGGGTGGAGATTATTGGGAAGAATGCAGTGGTTATAGGGAGAAGCAAGATTGTTGGGTTATCCACTTCTTTGCTATTGCAGAGGCACCACGCGACTGTTAGCACCTTGCATTCATTCACCAAGAACCCAGAAGAATTGACTCGTCGCGCTGATGTTGTCATCTCAGATGTTGGGACTCCAAACTTATTTCAATGGGACTGGCTGAAGCCAGGGGCAGTTGTAGTTGATATGGGGACGAATCCAGTTAAGGATTCCAGTAGCCGTCATGGTTTTCGTGTTACAGGAGATGTTTGCTACTCGGGGGCAATCAAGGTGGTGTCAGCCATAACTCCTGTTCCACGAGGAGTAGGACCTGTTGTAATCTCAATGCTGCTCTCTAACACCCTTGACTCTGCTAAAAGAGCTTTCGGATTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00670 ko01100 map00670 map01100

Pfam Domains

Protein Families

THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

343

Amino Acids

37.14

Weight (kDa)

9.62

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THF_DHG_CYH	PF00763	55 - 170	1.3e-38	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
THF_DHG_CYH_C	PF02882	191 - 339	8.5e-48	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003056)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020 FvH4_1g00020
malus_domestica	MD03G1140500.v1.1
prunus_persica	Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1 Prupe.6G126200_v2.0.a1
pyrus_communis	pycom03g09560
rosa_chinensis	RchiOBHm_Chr2g0084241
rosa_laevigata	RLG00000015602
rosa_multiflora	Rmu_sc0003129.1_g000019
rosa_roxburghii	Rroxscaffold_2G00156220
rosa_rugosa	Rorug01G0452000
rosa_samantha	Rh2AG000400 Rh2BG000300 Rh2CG000200 Rh2DG000400
rosa_wichuraiana	Rw2G000020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	696
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	2 cut(s)	704, 759
AciI	CCGC	3 cut(s)	122, 168, 547
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	81, 836
AfaI	GTAC	2 cut(s)	52, 370
AfiI	CCNNNNNNNGG	2 cut(s)	529, 613
AgsI	TTSAA	3 cut(s)	353, 596, 803
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	247, 820
AluBI	AGCT	5 cut(s)	59, 206, 317, 442, 1016
AluI	AGCT	5 cut(s)	59, 206, 317, 442, 1016
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	116
Alw44I	GTGCAC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	910
ApaLI	GTGCAC	1 cut(s)	422
ApeKI	GCWGC	4 cut(s)	206, 230, 439, 982
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	2 cut(s)	42, 761
AspS9I	GGNCC	2 cut(s)	195, 962
AsuHPI	GGTGA	1 cut(s)	721
AvaI	CYCGRG	1 cut(s)	910
AvaII	GGWCC	2 cut(s)	195, 962
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	2 cut(s)	426, 580
BanI	GGYRCC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	951
BbsI	GAAGAC	2 cut(s)	120, 247
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	4 cut(s)	193, 217, 451, 969
BccI	CCATC	2 cut(s)	309, 503
BceAI	ACGGC	1 cut(s)	858
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	2 cut(s)	249, 822
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	132
BglI	GCCNNNNNGGC	1 cut(s)	584
BisI	GCNGC	4 cut(s)	207, 231, 440, 983
BlsI	GCNGC	4 cut(s)	208, 232, 441, 984
Bme1390I	CCNGG	2 cut(s)	249, 822
Bme18I	GGWCC	2 cut(s)	195, 962
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	910
BmgT120I	GGNCC	2 cut(s)	195, 962
BmiI	GGNNCC	2 cut(s)	558, 698
BmrFI	CCNGG	2 cut(s)	249, 822
BpiI	GAAGAC	2 cut(s)	120, 247
BpuEI	CTTGAG	1 cut(s)	290
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 613
Bse1I	ACTGG	3 cut(s)	815, 854, 867
Bse21I	CCTNAGG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	249, 822
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	2 cut(s)	514, 517
BseLI	CCNNNNNNNGG	2 cut(s)	529, 613
BseMII	CTCAG	2 cut(s)	127, 789
BseNI	ACTGG	3 cut(s)	815, 854, 867
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	2 cut(s)	426, 580
BseXI	GCAGC	4 cut(s)	193, 217, 451, 969
BsgI	GTGCAG	1 cut(s)	458
Bsh1236I	CGCG	2 cut(s)	704, 759
Bsh1285I	CGRYCG	1 cut(s)	21
BshNI	GGYRCC	1 cut(s)	696
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	910
BslFI	GGGAC	3 cut(s)	799, 821, 859
BslI	CCNNNNNNNGG	2 cut(s)	529, 613
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	3 cut(s)	799, 821, 859
BsmI	GAATGC	2 cut(s)	640, 721
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	910
Bsp1286I	GDGCHC	2 cut(s)	426, 580
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	3 cut(s)	122, 168, 547
BspCNI	CTCAG	2 cut(s)	126, 788
BspFNI	CGCG	2 cut(s)	704, 759
BspLI	GGNNCC	2 cut(s)	558, 698
BspMAI	CTGCAG	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	696
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	815, 854, 867
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	951
Bst2BI	CACGAG	1 cut(s)	951
Bst2UI	CCWGG	2 cut(s)	249, 822
Bst4CI	ACNGT	3 cut(s)	368, 428, 709
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	3 cut(s)	122, 319, 589
BstDEI	CTNAG	3 cut(s)	113, 582, 775
BstF5I	GGATG	2 cut(s)	514, 517
BstFNI	CGCG	2 cut(s)	704, 759
BstHHI	GCGC	2 cut(s)	42, 761
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	584, 1013
BstNI	CCWGG	2 cut(s)	249, 822
BstSCI	CCNGG	2 cut(s)	247, 820
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	426, 580
BstUI	CGCG	2 cut(s)	704, 759
BstV1I	GCAGC	4 cut(s)	193, 217, 451, 969
BstV2I	GAAGAC	2 cut(s)	120, 247
Bsu36I	CCTNAGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	514, 517
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	145, 645
Cac8I	GCNNGC	3 cut(s)	122, 319, 589
CfoI	GCGC	2 cut(s)	42, 761
Cfr13I	GGNCC	2 cut(s)	195, 962
Csp6I	GTAC	2 cut(s)	51, 369
CspCI	CAANNNNNGTGG	2 cut(s)	906, 941
CviAII	CATG	3 cut(s)	93, 544, 878
CviQI	GTAC	2 cut(s)	51, 369
DdeI	CTNAG	3 cut(s)	113, 582, 775
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	195, 962
Eco57I	CTGAAG	2 cut(s)	81, 836
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRII	CCWGG	2 cut(s)	247, 820
FaeI	CATG	3 cut(s)	96, 547, 881
FaqI	GGGAC	3 cut(s)	799, 821, 859
FatI	CATG	3 cut(s)	92, 543, 877
FauI	CCCGC	2 cut(s)	129, 540
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	207, 231, 440, 983
FokI	GGATG	2 cut(s)	504, 521
Fsp4HI	GCNGC	4 cut(s)	207, 231, 440, 983
GlaI	GCGC	2 cut(s)	41, 760
GluI	GCNGC	4 cut(s)	207, 231, 440, 983
HhaI	GCGC	2 cut(s)	42, 761
Hin1II	CATG	3 cut(s)	96, 547, 881
Hin6I	GCGC	2 cut(s)	40, 759
HinP1I	GCGC	2 cut(s)	40, 759
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	7 cut(s)	284, 535, 751, 787, 850, 863, 1001
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	2 cut(s)	99, 424
Hpy188I	TCNGA	4 cut(s)	332, 608, 778, 1022
Hpy188III	TCNNGA	2 cut(s)	198, 494
Hpy8I	GTNNAC	2 cut(s)	99, 424
Hpy99I	CGWCG	4 cut(s)	79, 82, 421, 759
HpyAV	CCTTC	2 cut(s)	220, 546
HpyCH4III	ACNGT	3 cut(s)	368, 428, 709
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	9 cut(s)	134, 219, 321, 424, 439, 591, 638, 691, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	584, 1013
HpyF3I	CTNAG	3 cut(s)	113, 582, 775
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	96, 547, 881
HspAI	GCGC	2 cut(s)	40, 759
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	447, 609
Lsp1109I	GCAGC	4 cut(s)	193, 217, 451, 969
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	272, 337, 889
MalI	GATC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	120, 252, 440, 643, 755
MhlI	GDGCHC	2 cut(s)	426, 580
MluCI	AATT	4 cut(s)	432, 481, 596, 746
MlyI	GAGTC	3 cut(s)	745, 781, 995
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	6 cut(s)	114, 456, 460, 533, 687, 947
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	5 cut(s)	26, 311, 405, 858, 1025
MslI	CAYNNNNRTG	2 cut(s)	91, 294
MspA1I	CMGCKG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	249, 822
Mva1269I	GAATGC	2 cut(s)	640, 721
MvaI	CCWGG	2 cut(s)	249, 822
MvnI	CGCG	2 cut(s)	704, 759
MwoI	GCNNNNNNNGC	2 cut(s)	584, 1013
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	96, 547, 881
NlaIV	GGNNCC	2 cut(s)	558, 698
NmuCI	GTSAC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 95
PctI	GAATGC	2 cut(s)	640, 721
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	4 cut(s)	284, 535, 850, 863
PkrI	GCNGC	4 cut(s)	208, 232, 441, 984
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	3 cut(s)	745, 781, 995
PpsI	GAGTC	3 cut(s)	745, 781, 995
PpuMI	RGGWCCY	1 cut(s)	962
PsiI	TTATAA	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	2 cut(s)	247, 820
PspGI	CCWGG	2 cut(s)	247, 820
PspN4I	GGNNCC	2 cut(s)	558, 698
PspPI	GGNCC	2 cut(s)	195, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstI	CTGCAG	1 cut(s)	136
PvuI	CGATCG	1 cut(s)	21
RsaI	GTAC	2 cut(s)	52, 370
RsaNI	GTAC	2 cut(s)	51, 369
RseI	CAYNNNNRTG	2 cut(s)	91, 294
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	5 cut(s)	26, 311, 405, 858, 1025
SatI	GCNGC	4 cut(s)	207, 231, 440, 983
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	2 cut(s)	195, 962
SchI	GAGTC	3 cut(s)	745, 781, 995
ScrFI	CCNGG	2 cut(s)	249, 822
SduI	GDGCHC	2 cut(s)	426, 580
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	195, 962
SmiMI	CAYNNNNRTG	2 cut(s)	91, 294
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	432, 481, 596, 746
SsiI	CCGC	3 cut(s)	122, 168, 547
StyD4I	CCNGG	2 cut(s)	247, 820
TaaI	ACNGT	3 cut(s)	368, 428, 709
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	5 cut(s)	17, 21, 74, 98, 379
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	4 cut(s)	432, 481, 596, 746
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	4 cut(s)	284, 535, 850, 863
Tru1I	TTAA	5 cut(s)	26, 311, 405, 858, 1025
Tru9I	TTAA	5 cut(s)	26, 311, 405, 858, 1025
TscAI	CASTG	2 cut(s)	145, 645
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	4 cut(s)	206, 230, 439, 982
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	17, 239, 387, 506, 714
TspRI	CASTG	2 cut(s)	145, 645
VneI	GTGCAC	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	195, 962
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.