Rorug01G0452000

Bifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003056
Physical Location & Seq
Reverse (-)
54684377 .. 54685203
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0452000.1

Sequence Viewer

Length: 642 bp
ATGGAATGGGAACCTATGGGATTAAGAGATCCAGATCAGCTCGAGAAGAAGCTGCCGGAAAATATCAAATTCCCTGAAGCCAAGTGGATGGATCTGGATCTGGATCTGGCCGGCGAGAACATGAGTCATGCTATCGTAGAAGAATTGGGTTATGATTTTGATTTGGATTCCATTGATTATGTTTCCGACGAAGAATCCGAGGACGAGGATCTGAATCTGCCGCCTGTTGACAAGTGTTGTGATGATGAACAATTATCTAAACTTGGTCAGATCAGAACAAATGATGCTGGAGTGTCTTATGTCCGTGTGGGCGACTGTGTGTATGTGAAAGAGTCTAAAACGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATAGAATGCAAGGGTTGTGGTAAGTTGGGACCTGCATGCTGTTCTGAGGGAGGACGTGCTGTTCTCAGGAGGTGTGGTCATTGTTTTGATTTTGGTCACTGGGGGGGCGACTGCCCCAACTATAAGTATATGCCCCTTTCGGCCTTCCCAGATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko01100 map00670 map01100
Pfam Domains
Protein Families
THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

213

Amino Acids

23.92

Weight (kDa)

4.23

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
AciI CCGC 1 cut(s) 221
AclWI GGATC 6 cut(s) 23, 99, 105, 111, 216, 417
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 96
AcyI GRCGYC 1 cut(s) 469
AjiI CACGTC 1 cut(s) 536
AjnI CCWGG 2 cut(s) 405, 451
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 2 cut(s) 40, 52
AluI AGCT 2 cut(s) 40, 52
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 6 cut(s) 23, 99, 105, 111, 216, 417
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 2 cut(s) 108, 621
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 39
BccI CCATC 2 cut(s) 82, 353
BciT130I CCWGG 2 cut(s) 407, 453
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 437
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 2 cut(s) 53, 221
BlsI GCNGC 2 cut(s) 54, 222
Bme1390I CCNGG 2 cut(s) 407, 453
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 2 cut(s) 12, 510
BmrFI CCNGG 2 cut(s) 407, 453
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 589
BpmI CTGGAG 1 cut(s) 309
BsaBI GATNNNNATC 4 cut(s) 33, 96, 102, 213
BsaHI GRCGYC 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 198, 431
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 584
Bse8I GATNNNNATC 4 cut(s) 33, 96, 102, 213
BseBI CCWGG 2 cut(s) 407, 453
BseDI CCNNGG 2 cut(s) 198, 431
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 4 cut(s) 33, 96, 102, 213
BseMII CTCAG 2 cut(s) 516, 559
BseNI ACTGG 1 cut(s) 584
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 110, 623
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 56, 111
BslFI GGGAC 2 cut(s) 375, 522
BsmAI GTCTC 1 cut(s) 476
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 2 cut(s) 375, 522
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 2 cut(s) 110, 623
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 110, 623
BspCNI CTCAG 2 cut(s) 517, 558
BspLI GGNNCC 2 cut(s) 12, 510
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 6 cut(s) 23, 99, 105, 111, 216, 417
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 584
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 198, 431
BssMI GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
BssNI GRCGYC 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 407, 453
Bst4CI ACNGT 3 cut(s) 317, 353, 463
BstACI GRCGYC 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 112, 517
BstDEI CTNAG 2 cut(s) 525, 545
BstDSI CCRYGG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 8 cut(s) 31, 37, 94, 100, 106, 211, 273, 412
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
BstNI CCWGG 2 cut(s) 407, 453
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 2 cut(s) 405, 451
BstV1I GCAGC 1 cut(s) 39
BstX2I RGATCY 5 cut(s) 28, 91, 97, 103, 208
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 5 cut(s) 28, 91, 97, 103, 208
BsuRI GGCC 2 cut(s) 110, 623
BtgI CCRYGG 1 cut(s) 431
BtrI CACGTC 1 cut(s) 536
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 358, 577
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 112, 517
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 509
CseI GACGC 1 cut(s) 458
CsiI ACCWGGT 1 cut(s) 451
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 5 cut(s) 121, 128, 432, 516, 639
CviJI RGCY 6 cut(s) 40, 52, 80, 110, 436, 623
CviKI_1 RGCY 6 cut(s) 40, 52, 80, 110, 436, 623
DdeI CTNAG 2 cut(s) 525, 545
DpnI GATC 8 cut(s) 30, 36, 93, 99, 105, 210, 272, 411
DpnII GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
EaeI YGGCCR 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 2 cut(s) 405, 451
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 5 cut(s) 124, 131, 435, 519, 642
FaqI GGGAC 2 cut(s) 375, 522
FatI CATG 5 cut(s) 120, 127, 431, 515, 638
Fnu4HI GCNGC 2 cut(s) 53, 221
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 2 cut(s) 53, 221
FspBI CTAG 1 cut(s) 437
GluI GCNGC 2 cut(s) 53, 221
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 110, 623
HapII CCGG 2 cut(s) 56, 111
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 469
Hin1II CATG 5 cut(s) 124, 131, 435, 519, 642
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 5 cut(s) 124, 167, 194, 214, 332
HpaII CCGG 2 cut(s) 56, 111
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 6 cut(s) 187, 199, 213, 270, 275, 526
Hpy188III TCNNGA 5 cut(s) 32, 43, 95, 101, 547
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 3 cut(s) 371, 377, 634
HpyCH4III ACNGT 3 cut(s) 317, 353, 463
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 2 cut(s) 489, 515
HpyF3I CTNAG 2 cut(s) 525, 545
HpySE526I ACGT 1 cut(s) 535
Hsp92I GRCGYC 1 cut(s) 469
Hsp92II CATG 5 cut(s) 124, 131, 435, 519, 642
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 274
MabI ACCWGGT 1 cut(s) 451
MaeI CTAG 1 cut(s) 437
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 575
MalI GATC 8 cut(s) 30, 36, 93, 99, 105, 210, 272, 411
MboI GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
MboII GAAGA 7 cut(s) 58, 152, 203, 356, 368, 383, 386
MflI RGATCY 5 cut(s) 28, 91, 97, 103, 208
MluCI AATT 3 cut(s) 68, 143, 251
MlyI GAGTC 2 cut(s) 133, 341
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 5 cut(s) 193, 199, 520, 524, 543
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 2 cut(s) 23, 441
MspI CCGG 2 cut(s) 56, 111
MspR9I CCNGG 2 cut(s) 407, 453
Mva1269I GAATGC 1 cut(s) 491
MvaI CCWGG 2 cut(s) 407, 453
NaeI GCCGGC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 431
NdeII GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 5 cut(s) 124, 131, 435, 519, 642
NlaIV GGNNCC 2 cut(s) 12, 510
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 519
PaeI GCATGC 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 491
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 167, 194, 214
PkrI GCNGC 2 cut(s) 54, 222
PleI GAGTC 2 cut(s) 132, 340
PpsI GAGTC 2 cut(s) 132, 340
PpuMI RGGWCCY 1 cut(s) 509
Psp5II RGGWCCY 1 cut(s) 509
Psp6I CCWGG 2 cut(s) 405, 451
PspGI CCWGG 2 cut(s) 405, 451
PspN4I GGNNCC 2 cut(s) 12, 510
PspPI GGNCC 1 cut(s) 509
PspPPI RGGWCCY 1 cut(s) 509
PsuI RGATCY 5 cut(s) 28, 91, 97, 103, 208
SaqAI TTAA 2 cut(s) 23, 441
SatI GCNGC 2 cut(s) 53, 221
Sau3AI GATC 8 cut(s) 28, 34, 91, 97, 103, 208, 270, 409
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 2 cut(s) 133, 341
ScrFI CCNGG 2 cut(s) 407, 453
SetI ASST 9 cut(s) 16, 42, 54, 388, 408, 457, 514, 538, 554
SexAI ACCWGGT 1 cut(s) 451
SfaNI GCATC 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 509
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SphI GCATGC 1 cut(s) 519
Sse9I AATT 3 cut(s) 68, 143, 251
SsiI CCGC 1 cut(s) 221
SspMI CTAG 1 cut(s) 437
StyD4I CCNGG 2 cut(s) 405, 451
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 317, 353, 463
TaiI ACGT 1 cut(s) 538
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 68, 143, 251
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 3 cut(s) 167, 194, 214
Tru1I TTAA 2 cut(s) 23, 441
Tru9I TTAA 2 cut(s) 23, 441
TscAI CASTG 2 cut(s) 358, 584
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 2 cut(s) 293, 356
TspRI CASTG 2 cut(s) 358, 584
VpaK11BI GGWCC 1 cut(s) 509
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 519
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.