Rmu_sc0003129.1_g000019

Bifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003129.1
OG0003056
Physical Location & Seq
Reverse (-)
89097 .. 92230
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003129.1_g000019.1.cds

Sequence Viewer

Length: 1086 bp
atgggggtctggcgcagattgggtacaaaagctgaagtcttgtattcgacgacgttctcatcgtcatggtcgacccctctcggtctcagtcgcccgctgtcttctgcagccagtggtaatgggcaggctgaaataatgagcggaaagccaatcgcaaaagacataaggtccagagtagctgctgaaatatgcagaatgaaggctgccacaggaagactgcctggattggctgttgttttggtgggtaacagaaaggattcacacacttatgtccatctcaagttaaaagcttgcaatcaagtcggaatagtgacttctattgttcaactgccccaagactgtactgaagctcgacttattgatattgtttcatcttttaaccggaacccgtcggtgcacggtataattgtgcagctccctcttccacagcatttagacgaggaaaagattataaattttgttagtccagaaaaagatgtggatggctttcatcccctcaacatggggaatcttgccatgcggggaagggaacccttatttatcccttgtgcccctaaggcttgcattgaattgttgctccgatatggggtggagattattgggaagaatgcagtggttataggaagaagcaagattgttgggttatccacttctttgctattgcagaggcaccacgtgactgttagcaccttgcattcattcaccaagaacccagaagaattgactcggcgcgctgatgttgtcatctcagatgttgggactccaaacttagttcaatgggactggctgaagccaggggcagttgtagttgatatggggacgaatccagttaaggatcccagtagccgtcatggttttcgtattacaggagatgtttgctactcggaggcaatcaaggtggtgtcagccataactcctgttccaggaggagtaggacctgttgttcgatcgtgtggtggtgacgtgaacatggtgcaacaggcaacggagttcctggattggtggcggcggtggatgcggtcggtgtccgggctgtgtcagccttgttggaccttgggccttgactttccttttgggccacactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00670 ko01100 map00670 map01100
Pfam Domains
Protein Families
THF_DHG_CYH THF_DHG_CYH_C

Protein Analysis

361

Amino Acids

39.38

Weight (kDa)

9.17

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 669
AccBSI CCGCTC 1 cut(s) 141
AccI GTMKAC 1 cut(s) 71
AccII CGCG 1 cut(s) 732
AciI CCGC 6 cut(s) 95, 141, 520, 1006, 1009, 1018
AclWI GGATC 2 cut(s) 830, 843
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 3 cut(s) 54, 366, 809
AcvI CACGTG 1 cut(s) 676
AdeI CACNNNGTG 1 cut(s) 676
AfaI GTAC 2 cut(s) 25, 343
AfiI CCNNNNNNNGG 3 cut(s) 502, 586, 923
AgsI TTSAA 3 cut(s) 326, 569, 776
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 964
AjnI CCWGG 4 cut(s) 220, 793, 922, 993
AloI GAACNNNNNNTCC 2 cut(s) 927, 959
AluBI AGCT 5 cut(s) 32, 179, 290, 350, 415
AluI AGCT 5 cut(s) 32, 179, 290, 350, 415
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 1 cut(s) 89
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 2 cut(s) 830, 843
AoxI GGCC 2 cut(s) 1057, 1076
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 4 cut(s) 107, 179, 203, 412
ApoI RAATTY 1 cut(s) 454
ArsI GACNNNNNNTTYG 3 cut(s) 927, 959, 1055
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 3 cut(s) 15, 732, 734
AspS9I GGNCC 5 cut(s) 168, 935, 1050, 1057, 1076
AsuC2I CCSGG 1 cut(s) 1030
AsuHPI GGTGA 2 cut(s) 694, 971
AvaII GGWCC 3 cut(s) 168, 935, 1050
AxyI CCTNAGG 1 cut(s) 555
BaeGI GKGCMC 2 cut(s) 399, 553
BamHI GGATCC 1 cut(s) 835
BanI GGYRCC 1 cut(s) 669
BbrPI CACGTG 1 cut(s) 676
BbsI GAAGAC 2 cut(s) 93, 220
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 4 cut(s) 119, 166, 190, 424
BccI CCATC 2 cut(s) 282, 476
BceAI ACGGC 1 cut(s) 831
BcgI CGANNNNNNTGC 2 cut(s) 283, 317
BciT130I CCWGG 4 cut(s) 222, 795, 924, 995
BcnI CCSGG 1 cut(s) 1030
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 1 cut(s) 1084
BfmI CTRYAG 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 557
BisI GCNGC 5 cut(s) 108, 180, 204, 413, 1007
BlsI GCNGC 5 cut(s) 109, 181, 205, 414, 1008
Bme1390I CCNGG 5 cut(s) 222, 795, 924, 995, 1030
Bme18I GGWCC 3 cut(s) 168, 935, 1050
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 964
BmgT120I GGNCC 5 cut(s) 168, 935, 1050, 1057, 1076
BmiI GGNNCC 4 cut(s) 386, 531, 671, 837
BmrFI CCNGG 5 cut(s) 222, 795, 924, 995, 1030
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 1 cut(s) 1005
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 93, 220
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 1030
BsaAI YACGTR 1 cut(s) 676
BsaI GGTCTC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 794, 1053
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 3 cut(s) 502, 586, 923
Bse1I ACTGG 4 cut(s) 111, 788, 827, 840
Bse21I CCTNAGG 1 cut(s) 555
BseBI CCWGG 4 cut(s) 222, 795, 924, 995
BseDI CCNNGG 2 cut(s) 794, 1053
BseGI GGATG 3 cut(s) 487, 490, 1020
BseLI CCNNNNNNNGG 3 cut(s) 502, 586, 923
BseMII CTCAG 2 cut(s) 100, 762
BseNI ACTGG 4 cut(s) 111, 788, 827, 840
BsePI GCGCGC 1 cut(s) 730
BseRI GAGGAG 1 cut(s) 942
BseSI GKGCMC 2 cut(s) 399, 553
BseXI GCAGC 4 cut(s) 119, 166, 190, 424
BsgI GTGCAG 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 732
Bsh1285I CGRYCG 2 cut(s) 950, 1022
BshFI GGCC 2 cut(s) 1059, 1078
BshNI GGYRCC 1 cut(s) 669
BsiEI CGRYCG 2 cut(s) 950, 1022
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 2 cut(s) 382, 1029
BslFI GGGAC 3 cut(s) 772, 794, 832
BslI CCNNNNNNNGG 3 cut(s) 502, 586, 923
BsmAI GTCTC 1 cut(s) 89
BsmFI GGGAC 3 cut(s) 772, 794, 832
BsmI GAATGC 2 cut(s) 613, 694
BsnI GGCC 2 cut(s) 1059, 1078
Bso31I GGTCTC 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 399, 553
Bsp143I GATC 2 cut(s) 835, 947
BspACI CCGC 6 cut(s) 95, 141, 520, 1006, 1009, 1018
BspANI GGCC 2 cut(s) 1059, 1078
BspCNI CTCAG 2 cut(s) 99, 761
BspFNI CGCG 1 cut(s) 732
BspLI GGNNCC 4 cut(s) 386, 531, 671, 837
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 2 cut(s) 830, 843
BspT107I GGYRCC 1 cut(s) 669
BspTNI GGTCTC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 141
BsrI ACTGG 4 cut(s) 111, 788, 827, 840
BssECI CCNNGG 2 cut(s) 794, 1053
BssHII GCGCGC 1 cut(s) 730
BssMI GATC 2 cut(s) 835, 947
BssT1I CCWWGG 1 cut(s) 1053
Bst2UI CCWGG 4 cut(s) 222, 795, 924, 995
Bst4CI ACNGT 3 cut(s) 341, 401, 682
Bst6I CTCTTC 1 cut(s) 426
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 5 cut(s) 95, 126, 292, 562, 732
BstDEI CTNAG 4 cut(s) 86, 555, 748, 769
BstENI CCTNNNNNAGG 1 cut(s) 921
BstF5I GGATG 3 cut(s) 487, 490, 1020
BstFNI CGCG 1 cut(s) 732
BstHHI GCGC 3 cut(s) 15, 732, 734
BstKTI GATC 2 cut(s) 838, 950
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 2 cut(s) 835, 947
BstMCI CGRYCG 2 cut(s) 950, 1022
BstMWI GCNNNNNNNGC 3 cut(s) 557, 1015, 1039
BstNI CCWGG 4 cut(s) 222, 795, 924, 995
BstSCI CCNGG 5 cut(s) 220, 793, 922, 993, 1028
BstSFI CTRYAG 1 cut(s) 105
BstSLI GKGCMC 2 cut(s) 399, 553
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 119, 166, 190, 424
BstV2I GAAGAC 2 cut(s) 93, 220
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
Bsu36I CCTNAGG 1 cut(s) 555
BsuRI GGCC 2 cut(s) 1059, 1078
BtrI CACGTC 1 cut(s) 964
BtsCI GGATG 3 cut(s) 487, 490, 1020
BtsI GCAGTG 1 cut(s) 618
BtsIMutI CAGTG 2 cut(s) 118, 618
Cac8I GCNNGC 5 cut(s) 95, 126, 292, 562, 732
CfoI GCGC 3 cut(s) 15, 732, 734
Cfr13I GGNCC 5 cut(s) 168, 935, 1050, 1057, 1076
Csp6I GTAC 2 cut(s) 24, 342
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviAII CATG 5 cut(s) 66, 502, 517, 851, 970
CviQI GTAC 2 cut(s) 24, 342
DdeI CTNAG 4 cut(s) 86, 555, 748, 769
DpnI GATC 2 cut(s) 837, 949
DpnII GATC 2 cut(s) 835, 947
DraIII CACNNNGTG 1 cut(s) 676
DriI GACNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 426
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 1053
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 3 cut(s) 168, 935, 1050
Eco57I CTGAAG 3 cut(s) 54, 366, 809
Eco72I CACGTG 1 cut(s) 676
Eco81I CCTNAGG 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 921
EcoO109I RGGNCCY 1 cut(s) 935
EcoRII CCWGG 4 cut(s) 220, 793, 922, 993
EcoT14I CCWWGG 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 1053
FaeI CATG 5 cut(s) 69, 505, 520, 854, 973
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 3 cut(s) 772, 794, 832
FatI CATG 5 cut(s) 65, 501, 516, 850, 969
FauI CCCGC 2 cut(s) 102, 513
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 108, 180, 204, 413, 1007
FokI GGATG 3 cut(s) 477, 494, 1027
Fsp4HI GCNGC 5 cut(s) 108, 180, 204, 413, 1007
FspBI CTAG 1 cut(s) 1084
GlaI GCGC 3 cut(s) 14, 731, 733
GluI GCNGC 5 cut(s) 108, 180, 204, 413, 1007
HaeIII GGCC 2 cut(s) 1059, 1078
HapII CCGG 2 cut(s) 382, 1029
HhaI GCGC 3 cut(s) 15, 732, 734
Hin1II CATG 5 cut(s) 69, 505, 520, 854, 973
Hin6I GCGC 3 cut(s) 13, 730, 732
HinP1I GCGC 3 cut(s) 13, 730, 732
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 5 cut(s) 257, 508, 724, 760, 823
HpaII CCGG 2 cut(s) 382, 1029
HphI GGTGA 2 cut(s) 694, 971
Hpy166II GTNNAC 3 cut(s) 72, 397, 967
Hpy188I TCNGA 4 cut(s) 305, 581, 751, 886
Hpy188III TCNNGA 2 cut(s) 171, 467
Hpy8I GTNNAC 3 cut(s) 72, 397, 967
Hpy99I CGWCG 3 cut(s) 52, 55, 394
HpyAV CCTTC 2 cut(s) 193, 519
HpyCH4III ACNGT 3 cut(s) 341, 401, 682
HpyCH4IV ACGT 3 cut(s) 53, 675, 963
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 1015, 1039
HpyF3I CTNAG 4 cut(s) 86, 555, 748, 769
HpySE526I ACGT 3 cut(s) 53, 675, 963
Hsp92II CATG 5 cut(s) 69, 505, 520, 854, 973
HspAI GCGC 3 cut(s) 13, 730, 732
Kzo9I GATC 2 cut(s) 835, 947
LmnI GCTCC 2 cut(s) 420, 582
Lsp1109I GCAGC 4 cut(s) 119, 166, 190, 424
LweI GCATC 1 cut(s) 1005
MaeI CTAG 1 cut(s) 1084
MaeII ACGT 3 cut(s) 53, 675, 963
MaeIII GTNAC 4 cut(s) 245, 310, 676, 959
MalI GATC 2 cut(s) 837, 949
MbiI CCGCTC 1 cut(s) 141
MboI GATC 2 cut(s) 835, 947
MboII GAAGA 6 cut(s) 93, 225, 413, 616, 636, 728
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 399, 553
MluCI AATT 4 cut(s) 405, 454, 569, 719
MlyI GAGTC 2 cut(s) 718, 754
MmeI TCCRAC 2 cut(s) 283, 1028
MnlI CCTC 7 cut(s) 87, 429, 433, 506, 660, 880, 920
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 3 cut(s) 284, 378, 831
MslI CAYNNNNRTG 2 cut(s) 64, 267
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 2 cut(s) 382, 1029
MspR9I CCNGG 5 cut(s) 222, 795, 924, 995, 1030
Mva1269I GAATGC 2 cut(s) 613, 694
MvaI CCWGG 4 cut(s) 222, 795, 924, 995
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 3 cut(s) 557, 1015, 1039
NciI CCSGG 1 cut(s) 1030
NdeII GATC 2 cut(s) 835, 947
NlaIII CATG 5 cut(s) 69, 505, 520, 854, 973
NlaIV GGNNCC 4 cut(s) 386, 531, 671, 837
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 3 cut(s) 310, 676, 959
PauI GCGCGC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 68
PctI GAATGC 2 cut(s) 613, 694
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 257, 508, 823
PfoI TCCNGGA 2 cut(s) 922, 993
PkrI GCNGC 5 cut(s) 109, 181, 205, 414, 1008
Ple19I CGATCG 1 cut(s) 950
PleI GAGTC 2 cut(s) 718, 754
PmaCI CACGTG 1 cut(s) 676
PmlI CACGTG 1 cut(s) 676
PpsI GAGTC 2 cut(s) 718, 754
Ppu21I YACGTR 1 cut(s) 676
PpuMI RGGWCCY 1 cut(s) 935
PsiI TTATAA 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 4 cut(s) 220, 793, 922, 993
PspCI CACGTG 1 cut(s) 676
PspGI CCWGG 4 cut(s) 220, 793, 922, 993
PspN4I GGNNCC 4 cut(s) 386, 531, 671, 837
PspPI GGNCC 5 cut(s) 168, 935, 1050, 1057, 1076
PspPPI RGGWCCY 1 cut(s) 935
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 835
PteI GCGCGC 1 cut(s) 730
PvuI CGATCG 1 cut(s) 950
RsaI GTAC 2 cut(s) 25, 343
RsaNI GTAC 2 cut(s) 24, 342
RseI CAYNNNNRTG 2 cut(s) 64, 267
SalI GTCGAC 1 cut(s) 70
SaqAI TTAA 3 cut(s) 284, 378, 831
SatI GCNGC 5 cut(s) 108, 180, 204, 413, 1007
Sau3AI GATC 2 cut(s) 835, 947
Sau96I GGNCC 5 cut(s) 168, 935, 1050, 1057, 1076
SchI GAGTC 2 cut(s) 718, 754
ScrFI CCNGG 5 cut(s) 222, 795, 924, 995, 1030
SduI GDGCHC 2 cut(s) 399, 553
SfaNI GCATC 1 cut(s) 1005
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 3 cut(s) 168, 935, 1050
SmiMI CAYNNNNRTG 2 cut(s) 64, 267
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 4 cut(s) 405, 454, 569, 719
SsiI CCGC 6 cut(s) 95, 141, 520, 1006, 1009, 1018
SspMI CTAG 1 cut(s) 1084
StyD4I CCNGG 5 cut(s) 220, 793, 922, 993, 1028
StyI CCWWGG 1 cut(s) 1053
TaaI ACNGT 3 cut(s) 341, 401, 682
TaiI ACGT 3 cut(s) 56, 678, 966
TaqI TCGA 4 cut(s) 47, 71, 352, 946
TaqII GACCGA 1 cut(s) 71
TasI AATT 4 cut(s) 405, 454, 569, 719
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 1009
TfiI GAWTC 3 cut(s) 257, 508, 823
Tru1I TTAA 3 cut(s) 284, 378, 831
Tru9I TTAA 3 cut(s) 284, 378, 831
TscAI CASTG 2 cut(s) 118, 618
TseFI GTSAC 3 cut(s) 310, 676, 959
TseI GCWGC 4 cut(s) 107, 179, 203, 412
Tsp45I GTSAC 3 cut(s) 310, 676, 959
TspDTI ATGAA 4 cut(s) 212, 360, 479, 687
TspGWI ACGGA 1 cut(s) 1001
TspRI CASTG 2 cut(s) 118, 618
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 3 cut(s) 168, 935, 1050
XagI CCTNNNNNAGG 1 cut(s) 921
XapI RAATTY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 1 cut(s) 1084
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.