FvH4_1g00030

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014048
Physical Location & Seq
Forward (+)
21075 .. 24289
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00030.t3

Sequence Viewer

Length: 867 bp
ATGGCAGCAAACGTTTTGAAATGCGGCGCGGGCATAGGAGCCCGTGTGATATTCCTCTGGCCGTCTCCTAAATCTCCACGCCCCTTTCCTCGTTTCAACCAGATCACTGCGAATAGTTATCCTAGTATTTGTAGCAAACCACTATCATCAGCAAGAACAAGAAGCGCGGTCTGTTTTTGCACCGCCACTTCGGCCACAGAGGCAGAGGCGATAAGCGATGCTGATGTGGAACATAAAAAGATAAAGGATGCAGCCGACCTGCTTGACATAAGGGTTGGGGTGATCCTCAGGGCATGGAGGCATGAGGAAGCCGATTCTCTTTACGTGGAAGAGGTTGACATTGGAGAGCCTGAACCCAGAATCATCTGCAGTGGGCTTGTCAATTACATTCCCATTGATCACCTTCAGGAGAGAAAAGTAGTTGTCCTTGCTAATCTGAAGCCCAGGAATATGCGGGGTGTCAAGTCTTGTGGAATGCTAATGGCCGCTTCTGATGCCTCCCATGAAAAAGTTGAGCTTCTTGAGCCTCCTGAGGGTTCACTTCCTGGCCAAAGGATATGGTTTGGCTCTGAAAATGATCATCAAAATCAGCCTCCTCCTGCCACACCTAACCAGAGCCTCAACGCCACGAAGGCCAATATTAGGAGTACATTCCTACCAAATAATGCCCATTATAAAATTTGGATGTGCAATTACATTATCAAAGTAAACTCCTACGGCAATGCCTGTTCACTTAGGAAGACTCCCAAGGCACCCATAAGAAGAGATCTCTCTCAAAAGCACCGACCTCAGCCCCAGCCCATCAAGAATGAAAATTCAAAAGAAAAAGATATGGGAGCTGGTGCAACCTCATCTGAAGACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

289

Amino Acids

31.83

Weight (kDa)

8.97

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_bind PF01588 90 - 184 2.7e-29 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
Acc36I ACCTGC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 751
AccII CGCG 2 cut(s) 29, 167
AciI CCGC 6 cut(s) 24, 29, 167, 183, 454, 486
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 4 cut(s) 59, 192, 483, 547
AcsI RAATTY 2 cut(s) 678, 814
AcuI CTGAAG 2 cut(s) 389, 458
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 533, 642
AgsI TTSAA 3 cut(s) 19, 97, 819
AjnI CCWGG 2 cut(s) 443, 544
AluBI AGCT 2 cut(s) 517, 839
AluI AGCT 2 cut(s) 517, 839
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 277
AoxI GGCC 5 cut(s) 59, 192, 483, 547, 633
ApeKI GCWGC 2 cut(s) 5, 251
ApoI RAATTY 2 cut(s) 678, 814
AspLEI GCGC 2 cut(s) 29, 167
AsuHPI GGTGA 2 cut(s) 292, 392
AxyI CCTNAGG 2 cut(s) 287, 531
BalI TGGCCA 1 cut(s) 549
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 746
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 2 cut(s) 17, 263
BccI CCATC 1 cut(s) 809
BceAI ACGGC 2 cut(s) 46, 733
BciT130I CCWGG 2 cut(s) 445, 546
BclI TGATCA 2 cut(s) 397, 577
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 267
BglI GCCNNNNNGGC 3 cut(s) 191, 200, 632
BglII AGATCT 1 cut(s) 766
BisI GCNGC 4 cut(s) 6, 25, 252, 486
BlsI GCNGC 4 cut(s) 7, 26, 253, 487
Bme1390I CCNGG 2 cut(s) 445, 546
BmiI GGNNCC 2 cut(s) 40, 753
BmrFI CCNGG 2 cut(s) 445, 546
BmsI GCATC 3 cut(s) 208, 238, 484
BpiI GAAGAC 1 cut(s) 746
Bpu10I CCTNAGC 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 443, 747
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 2 cut(s) 533, 642
Bse21I CCTNAGG 2 cut(s) 287, 531
Bse3DI GCAATG 1 cut(s) 727
BseBI CCWGG 2 cut(s) 445, 546
BseDI CCNNGG 2 cut(s) 443, 747
BseGI GGATG 2 cut(s) 253, 690
BseLI CCNNNNNNNGG 2 cut(s) 533, 642
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 3 cut(s) 301, 522, 803
BseRI GAGGAG 1 cut(s) 585
BseXI GCAGC 2 cut(s) 17, 263
BseYI CCCAGC 1 cut(s) 795
Bsh1236I CGCG 2 cut(s) 29, 167
BshFI GGCC 5 cut(s) 61, 194, 485, 549, 635
BshNI GGYRCC 1 cut(s) 751
BslI CCNNNNNNNGG 2 cut(s) 533, 642
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 480
BsnI GGCC 5 cut(s) 61, 194, 485, 549, 635
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 5 cut(s) 102, 282, 397, 577, 766
BspACI CCGC 6 cut(s) 24, 29, 167, 183, 454, 486
BspANI GGCC 5 cut(s) 61, 194, 485, 549, 635
BspCNI CTCAG 3 cut(s) 300, 523, 802
BspFNI CGCG 2 cut(s) 29, 167
BspLI GGNNCC 2 cut(s) 40, 753
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 751
BsrDI GCAATG 1 cut(s) 727
BssECI CCNNGG 2 cut(s) 443, 747
BssMI GATC 5 cut(s) 102, 282, 397, 577, 766
BssT1I CCWWGG 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 445, 546
Bst6I CTCTTC 2 cut(s) 324, 757
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 287, 531, 734, 789
BstF5I GGATG 2 cut(s) 253, 690
BstFNI CGCG 2 cut(s) 29, 167
BstHHI GCGC 2 cut(s) 29, 167
BstKTI GATC 5 cut(s) 105, 285, 400, 580, 769
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 5 cut(s) 102, 282, 397, 577, 766
BstMWI GCNNNNNNNGC 6 cut(s) 30, 191, 200, 494, 523, 632
BstNI CCWGG 2 cut(s) 445, 546
BstSCI CCNGG 2 cut(s) 443, 544
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 2 cut(s) 29, 167
BstV1I GCAGC 2 cut(s) 17, 263
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu36I CCTNAGG 2 cut(s) 287, 531
BsuRI GGCC 5 cut(s) 61, 194, 485, 549, 635
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 2 cut(s) 253, 690
BtsI GCAGTG 2 cut(s) 105, 376
BtsIMutI CAGTG 2 cut(s) 105, 376
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 2 cut(s) 29, 167
Csp6I GTAC 1 cut(s) 648
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 3 cut(s) 294, 302, 503
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 4 cut(s) 287, 531, 734, 789
DpnI GATC 5 cut(s) 104, 284, 399, 579, 768
DpnII GATC 5 cut(s) 102, 282, 397, 577, 766
EaeI YGGCCR 4 cut(s) 59, 192, 483, 547
Eam1104I CTCTTC 2 cut(s) 324, 757
EarI CTCTTC 2 cut(s) 324, 757
Eco130I CCWWGG 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 389, 458
Eco81I CCTNAGG 2 cut(s) 287, 531
EcoRII CCWGG 2 cut(s) 443, 544
EcoT14I CCWWGG 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 3 cut(s) 297, 305, 506
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 3 cut(s) 293, 301, 502
FauI CCCGC 2 cut(s) 22, 447
FbaI TGATCA 2 cut(s) 397, 577
Fnu4HI GCNGC 4 cut(s) 6, 25, 252, 486
FokI GGATG 2 cut(s) 260, 697
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 6, 25, 252, 486
FspBI CTAG 1 cut(s) 123
GlaI GCGC 2 cut(s) 28, 166
GluI GCNGC 4 cut(s) 6, 25, 252, 486
GsaI CCCAGC 1 cut(s) 799
HaeIII GGCC 5 cut(s) 61, 194, 485, 549, 635
HhaI GCGC 2 cut(s) 29, 167
Hin1II CATG 3 cut(s) 297, 305, 506
Hin6I GCGC 2 cut(s) 27, 165
HinP1I GCGC 2 cut(s) 27, 165
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 3 cut(s) 314, 360, 742
HphI GGTGA 2 cut(s) 292, 392
Hpy166II GTNNAC 4 cut(s) 337, 539, 709, 731
Hpy188I TCNGA 4 cut(s) 438, 493, 571, 856
Hpy188III TCNNGA 4 cut(s) 407, 521, 530, 805
Hpy8I GTNNAC 4 cut(s) 337, 539, 709, 731
HpyAV CCTTC 2 cut(s) 413, 625
HpyCH4IV ACGT 2 cut(s) 12, 324
HpyCH4V TGCA 5 cut(s) 180, 251, 369, 690, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 191, 200, 494, 523, 632
HpyF3I CTNAG 4 cut(s) 287, 531, 734, 789
HpySE526I ACGT 2 cut(s) 12, 324
Hsp92II CATG 3 cut(s) 297, 305, 506
HspAI GCGC 2 cut(s) 27, 165
Ksp22I TGATCA 2 cut(s) 397, 577
Kzo9I GATC 5 cut(s) 102, 282, 397, 577, 766
LmnI GCTCC 2 cut(s) 38, 836
Lsp1109I GCAGC 2 cut(s) 17, 263
LweI GCATC 3 cut(s) 208, 238, 484
MaeI CTAG 1 cut(s) 123
MaeII ACGT 2 cut(s) 12, 324
MalI GATC 5 cut(s) 104, 284, 399, 579, 768
MboI GATC 5 cut(s) 102, 282, 397, 577, 766
MboII GAAGA 3 cut(s) 341, 751, 774
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 549
MluCI AATT 4 cut(s) 382, 678, 691, 814
MluNI TGGCCA 1 cut(s) 549
MlyI GAGTC 1 cut(s) 736
Mox20I TGGCCA 1 cut(s) 549
MscI TGGCCA 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 549
MspR9I CCNGG 2 cut(s) 445, 546
Mva1269I GAATGC 1 cut(s) 480
MvaI CCWGG 2 cut(s) 445, 546
MvnI CGCG 2 cut(s) 29, 167
MwoI GCNNNNNNNGC 6 cut(s) 30, 191, 200, 494, 523, 632
NdeII GATC 5 cut(s) 102, 282, 397, 577, 766
NlaIII CATG 3 cut(s) 297, 305, 506
NlaIV GGNNCC 2 cut(s) 40, 753
PctI GAATGC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 314, 360
PkrI GCNGC 4 cut(s) 7, 26, 253, 487
PleI GAGTC 1 cut(s) 736
PpsI GAGTC 1 cut(s) 736
Ppu21I YACGTR 1 cut(s) 325
PsiI TTATAA 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 443, 544
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 2 cut(s) 443, 544
PspN4I GGNNCC 2 cut(s) 40, 753
PstI CTGCAG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 766
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SatI GCNGC 4 cut(s) 6, 25, 252, 486
Sau3AI GATC 5 cut(s) 102, 282, 397, 577, 766
SchI GAGTC 1 cut(s) 736
ScrFI CCNGG 2 cut(s) 445, 546
SduI GDGCHC 1 cut(s) 43
SfaNI GCATC 3 cut(s) 208, 238, 484
SfcI CTRYAG 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 4 cut(s) 382, 678, 691, 814
SsiI CCGC 6 cut(s) 24, 29, 167, 183, 454, 486
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 443, 544
StyI CCWWGG 1 cut(s) 747
TaiI ACGT 2 cut(s) 15, 327
TasI AATT 4 cut(s) 382, 678, 691, 814
TatI WGTACW 1 cut(s) 647
TauI GCSGC 2 cut(s) 27, 488
TfiI GAWTC 2 cut(s) 314, 360
TscAI CASTG 2 cut(s) 112, 376
TseI GCWGC 2 cut(s) 5, 251
TspDTI ATGAA 2 cut(s) 519, 825
TspRI CASTG 2 cut(s) 112, 376
XapI RAATTY 2 cut(s) 678, 814
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.