Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003129.1

Orthogroup ID

OG0014048

Physical Location & Seq

Genomic Coordinates Reverse (-)

83164 .. 88487

Gene Structure 5324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003129.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggcagcgaacgttttgaaatgcggcacgggcataggcgcgcgtctgatattcctatctccgtctcctaaatctccacggccctttgagcattcacttgctcatttccaccaaatcactgcgaatagttatcgcagtatttgtagcaaaccgaaagtttgtgattctgctgctgatgcgtcatcaccatcggcaagaagaagaagcgtggtctcctctttttgcgccgccacagatgttgaggaggcacaggtagaggcagaggcgataagcgatggtgatgaggaacagaaaaagataaaggatgcagccgacctgcttgacataagggttgggctagtccttagggcatggaggcatgaggaagctgattctctttacgtggaagaggttgacatcggagagcctgaacccagaatcatctgcagtgggcttgtcaattacattcctattgatcacattcaggagagaaaagtagttgtccttgctaatctgaagcccaggaacatgcggggtgtcaagtcttgtggaatgcttatggccgcttctgatgcttcccatgagagtgttgagcttcttgtgcctcctgagggttcacttcctggccaaaggatatggtttggctctgaagatgatcatcaaaatcagcctcctcctgccacacctaaccagattcaaaagaaaaagatatgggagctggtgcaacctcatctgaagacagatgatacttgtatggctatgcttgggatgcatataatgcggacatctgcaggagatgtttgctactcggaggcaatcaaggtggtgtcagccataactcctgttccaggaggagtaggacctgttgttcgatcgtgtggtggtgacgtgaacatggtgcaacaggcaacggagttcctggattggtggcggcggtggatgcggtcggtgtccgggctgtgtcagccttgttggaccttgggccttgactttccttttgggccacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_bind

Protein Analysis

329

Amino Acids

36.09

Weight (kDa)

5.82

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59980
fragaria_vesca	FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica	MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica	Prupe.6G126300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0084251
rosa_laevigata	RLG00000015603
rosa_multiflora	Rmu_sc0003129.1_g000017
rosa_roxburghii	Rroxscaffold_2G00156210
rosa_rugosa	Rorug01G0452100
rosa_samantha	Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana	Rw2G000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	324
AccII	CGCG	2 cut(s)	41, 43
AciI	CCGC	8 cut(s)	24, 228, 511, 543, 760, 910, 913, 922
AclI	AACGTT	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	540, 604
AcuI	CTGAAG	3 cut(s)	515, 648, 734
AfiI	CCNNNNNNNGG	2 cut(s)	590, 827
AgsI	TTSAA	2 cut(s)	19, 677
AjiI	CACGTC	1 cut(s)	868
AjnI	CCWGG	4 cut(s)	500, 601, 826, 897
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
AluBI	AGCT	3 cut(s)	368, 574, 697
AluI	AGCT	3 cut(s)	368, 574, 697
Alw26I	GTCTC	2 cut(s)	69, 217
AoxI	GGCC	5 cut(s)	80, 540, 604, 961, 980
ApeKI	GCWGC	3 cut(s)	5, 170, 308
ArsI	GACNNNNNNTTYG	3 cut(s)	831, 863, 959
AspLEI	GCGC	3 cut(s)	41, 43, 227
AspS9I	GGNCC	5 cut(s)	81, 839, 954, 961, 980
AsuC2I	CCSGG	1 cut(s)	934
AsuHPI	GGTGA	3 cut(s)	177, 290, 875
AvaII	GGWCC	2 cut(s)	839, 954
AxyI	CCTNAGG	2 cut(s)	344, 588
BalI	TGGCCA	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	722
BbvI	GCAGC	3 cut(s)	17, 157, 320
BccI	CCATC	2 cut(s)	196, 269
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	4 cut(s)	502, 603, 828, 899
BclI	TGATCA	2 cut(s)	454, 634
BcnI	CCSGG	1 cut(s)	934
BcoDI	GTCTC	2 cut(s)	69, 217
BfaI	CTAG	2 cut(s)	338, 988
BfmI	CTRYAG	2 cut(s)	424, 768
BfuAI	ACCTGC	1 cut(s)	324
BisI	GCNGC	7 cut(s)	6, 25, 171, 228, 309, 543, 911
BlsI	GCNGC	7 cut(s)	7, 26, 172, 229, 310, 544, 912
Bme1390I	CCNGG	5 cut(s)	502, 603, 828, 899, 934
Bme18I	GGWCC	2 cut(s)	839, 954
BmgBI	CACGTC	1 cut(s)	868
BmgT120I	GGNCC	5 cut(s)	81, 839, 954, 961, 980
BmrFI	CCNGG	5 cut(s)	502, 603, 828, 899, 934
BmsI	GCATC	5 cut(s)	166, 295, 541, 738, 909
BpiI	GAAGAC	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	934
BsaAI	YACGTR	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	3 cut(s)	77, 500, 957
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 827
Bse21I	CCTNAGG	2 cut(s)	344, 588
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	4 cut(s)	502, 603, 828, 899
BseDI	CCNNGG	3 cut(s)	77, 500, 957
BseGI	GGATG	3 cut(s)	310, 753, 924
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	590, 827
BseMII	CTCAG	1 cut(s)	579
BsePI	GCGCGC	1 cut(s)	39
BseRI	GAGGAG	4 cut(s)	205, 257, 642, 846
BseXI	GCAGC	3 cut(s)	17, 157, 320
Bsh1236I	CGCG	2 cut(s)	41, 43
Bsh1285I	CGRYCG	2 cut(s)	854, 926
BshFI	GGCC	5 cut(s)	82, 542, 606, 963, 982
BsiEI	CGRYCG	2 cut(s)	854, 926
BsiSI	CCGG	1 cut(s)	933
BslI	CCNNNNNNNGG	2 cut(s)	590, 827
BsmAI	GTCTC	2 cut(s)	69, 217
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	2 cut(s)	91, 537
BsnI	GGCC	5 cut(s)	82, 542, 606, 963, 982
Bso31I	GGTCTC	1 cut(s)	217
Bsp143I	GATC	3 cut(s)	454, 634, 851
BspACI	CCGC	8 cut(s)	24, 228, 511, 543, 760, 910, 913, 922
BspANI	GGCC	5 cut(s)	82, 542, 606, 963, 982
BspCNI	CTCAG	1 cut(s)	580
BspFNI	CGCG	2 cut(s)	41, 43
BspMAI	CTGCAG	2 cut(s)	428, 772
BspMI	ACCTGC	1 cut(s)	324
BspTNI	GGTCTC	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	77, 500, 957
BssHII	GCGCGC	1 cut(s)	39
BssMI	GATC	3 cut(s)	454, 634, 851
BssT1I	CCWWGG	1 cut(s)	957
Bst2UI	CCWGG	4 cut(s)	502, 603, 828, 899
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstBAI	YACGTR	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	2 cut(s)	344, 588
BstDSI	CCRYGG	1 cut(s)	77
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	310, 753, 924
BstFNI	CGCG	2 cut(s)	41, 43
BstHHI	GCGC	3 cut(s)	41, 43, 227
BstKTI	GATC	3 cut(s)	457, 637, 854
BstMAI	GTCTC	2 cut(s)	69, 217
BstMBI	GATC	3 cut(s)	454, 634, 851
BstMCI	CGRYCG	2 cut(s)	854, 926
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 88, 176, 551, 580, 748, 757, 919, 943
BstNI	CCWGG	4 cut(s)	502, 603, 828, 899
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	5 cut(s)	500, 601, 826, 897, 932
BstSFI	CTRYAG	2 cut(s)	424, 768
BstUI	CGCG	2 cut(s)	41, 43
BstV1I	GCAGC	3 cut(s)	17, 157, 320
BstV2I	GAAGAC	1 cut(s)	722
Bsu36I	CCTNAGG	2 cut(s)	344, 588
BsuRI	GGCC	5 cut(s)	82, 542, 606, 963, 982
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	868
BtsCI	GGATG	3 cut(s)	310, 753, 924
BtsI	GCAGTG	2 cut(s)	117, 433
BtsIMutI	CAGTG	2 cut(s)	117, 433
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	3 cut(s)	41, 43, 227
Cfr13I	GGNCC	5 cut(s)	81, 839, 954, 961, 980
CseI	GACGC	2 cut(s)	32, 168
CspCI	CAANNNNNGTGG	6 cut(s)	220, 255, 508, 543, 783, 818
CviAII	CATG	5 cut(s)	351, 359, 508, 560, 874
DdeI	CTNAG	2 cut(s)	344, 588
DpnI	GATC	3 cut(s)	456, 636, 853
DpnII	GATC	3 cut(s)	454, 634, 851
EaeI	YGGCCR	2 cut(s)	540, 604
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	957
Eco31I	GGTCTC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	839, 954
Eco57I	CTGAAG	3 cut(s)	515, 648, 734
Eco81I	CCTNAGG	2 cut(s)	344, 588
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoO109I	RGGNCCY	1 cut(s)	839
EcoRII	CCWGG	4 cut(s)	500, 601, 826, 897
EcoT14I	CCWWGG	1 cut(s)	957
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	957
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	5 cut(s)	354, 362, 511, 563, 877
FatI	CATG	5 cut(s)	350, 358, 507, 559, 873
FauI	CCCGC	1 cut(s)	504
FbaI	TGATCA	2 cut(s)	454, 634
Fnu4HI	GCNGC	7 cut(s)	6, 25, 171, 228, 309, 543, 911
FokI	GGATG	3 cut(s)	317, 760, 931
Fsp4HI	GCNGC	7 cut(s)	6, 25, 171, 228, 309, 543, 911
FspBI	CTAG	2 cut(s)	338, 988
GlaI	GCGC	3 cut(s)	40, 42, 226
GluI	GCNGC	7 cut(s)	6, 25, 171, 228, 309, 543, 911
HaeIII	GGCC	5 cut(s)	82, 542, 606, 963, 982
HapII	CCGG	1 cut(s)	933
HgaI	GACGC	2 cut(s)	32, 168
HhaI	GCGC	3 cut(s)	41, 43, 227
Hin1II	CATG	5 cut(s)	354, 362, 511, 563, 877
Hin6I	GCGC	3 cut(s)	39, 41, 225
HinP1I	GCGC	3 cut(s)	39, 41, 225
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	164, 371, 417, 673
HpaII	CCGG	1 cut(s)	933
HphI	GGTGA	3 cut(s)	177, 290, 875
Hpy166II	GTNNAC	3 cut(s)	394, 596, 871
Hpy188I	TCNGA	7 cut(s)	48, 401, 495, 550, 628, 714, 790
Hpy188III	TCNNGA	2 cut(s)	464, 587
Hpy8I	GTNNAC	3 cut(s)	394, 596, 871
HpyCH4IV	ACGT	3 cut(s)	12, 381, 867
HpyCH4V	TGCA	6 cut(s)	308, 426, 703, 751, 770, 880
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 88, 176, 551, 580, 748, 757, 919, 943
HpyF3I	CTNAG	2 cut(s)	344, 588
HpySE526I	ACGT	3 cut(s)	12, 381, 867
Hsp92II	CATG	5 cut(s)	354, 362, 511, 563, 877
HspAI	GCGC	3 cut(s)	39, 41, 225
Ksp22I	TGATCA	2 cut(s)	454, 634
Kzo9I	GATC	3 cut(s)	454, 634, 851
LmnI	GCTCC	1 cut(s)	694
Lsp1109I	GCAGC	3 cut(s)	17, 157, 320
LweI	GCATC	5 cut(s)	166, 295, 541, 738, 909
MaeI	CTAG	2 cut(s)	338, 988
MaeII	ACGT	3 cut(s)	12, 381, 867
MaeIII	GTNAC	1 cut(s)	863
MalI	GATC	3 cut(s)	456, 636, 853
MboI	GATC	3 cut(s)	454, 634, 851
MboII	GAAGA	5 cut(s)	210, 213, 398, 641, 727
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	1 cut(s)	439
MluNI	TGGCCA	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	932
Mox20I	TGGCCA	1 cut(s)	606
Mph1103I	ATGCAT	1 cut(s)	753
MscI	TGGCCA	1 cut(s)	606
MslI	CAYNNNNRTG	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	606
MspI	CCGG	1 cut(s)	933
MspR9I	CCNGG	5 cut(s)	502, 603, 828, 899, 934
Mva1269I	GAATGC	2 cut(s)	91, 537
MvaI	CCWGG	4 cut(s)	502, 603, 828, 899
MvnI	CGCG	2 cut(s)	41, 43
MwoI	GCNNNNNNNGC	9 cut(s)	30, 88, 176, 551, 580, 748, 757, 919, 943
NciI	CCSGG	1 cut(s)	934
NdeII	GATC	3 cut(s)	454, 634, 851
NlaIII	CATG	5 cut(s)	354, 362, 511, 563, 877
NmuCI	GTSAC	1 cut(s)	863
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	511
PauI	GCGCGC	1 cut(s)	39
PctI	GAATGC	2 cut(s)	91, 537
PfeI	GAWTC	4 cut(s)	164, 371, 417, 673
PfoI	TCCNGGA	2 cut(s)	826, 897
PkrI	GCNGC	7 cut(s)	7, 26, 172, 229, 310, 544, 912
Ple19I	CGATCG	1 cut(s)	854
Ppu21I	YACGTR	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	839
Psp1406I	AACGTT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	839
Psp6I	CCWGG	4 cut(s)	500, 601, 826, 897
PspGI	CCWGG	4 cut(s)	500, 601, 826, 897
PspPI	GGNCC	5 cut(s)	81, 839, 954, 961, 980
PspPPI	RGGWCCY	1 cut(s)	839
PstI	CTGCAG	2 cut(s)	428, 772
PteI	GCGCGC	1 cut(s)	39
PvuI	CGATCG	1 cut(s)	854
RseI	CAYNNNNRTG	1 cut(s)	564
SatI	GCNGC	7 cut(s)	6, 25, 171, 228, 309, 543, 911
Sau3AI	GATC	3 cut(s)	454, 634, 851
Sau96I	GGNCC	5 cut(s)	81, 839, 954, 961, 980
ScrFI	CCNGG	5 cut(s)	502, 603, 828, 899, 934
SfaNI	GCATC	5 cut(s)	166, 295, 541, 738, 909
SfcI	CTRYAG	2 cut(s)	424, 768
SinI	GGWCC	2 cut(s)	839, 954
SmiMI	CAYNNNNRTG	1 cut(s)	564
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	8 cut(s)	24, 228, 511, 543, 760, 910, 913, 922
SspMI	CTAG	2 cut(s)	338, 988
StyD4I	CCNGG	5 cut(s)	500, 601, 826, 897, 932
StyI	CCWWGG	1 cut(s)	957
TaiI	ACGT	3 cut(s)	15, 384, 870
TaqI	TCGA	1 cut(s)	850
TasI	AATT	1 cut(s)	439
TauI	GCSGC	4 cut(s)	27, 230, 545, 913
TfiI	GAWTC	4 cut(s)	164, 371, 417, 673
TscAI	CASTG	2 cut(s)	124, 433
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	3 cut(s)	5, 170, 308
Tsp45I	GTSAC	1 cut(s)	863
TspGWI	ACGGA	2 cut(s)	51, 905
TspRI	CASTG	2 cut(s)	124, 433
VpaK11BI	GGWCC	2 cut(s)	839, 954
XagI	CCTNNNNNAGG	1 cut(s)	825
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	2 cut(s)	338, 988
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.