MD11G1171300.v1.1

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014048
Physical Location & Seq
Reverse (-)
18647941 .. 18652011
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1171300.v1.1.491

Sequence Viewer

Length: 909 bp
ATGAAACAAGGGAAAACCAGAGCCAGTGAGTTGCTATTGAGGATAGGGAGGAGGGGGAAAAGAATGGCAGCAACGAGCCTTTTGAAAGGAAAGTGCGCCGGCATCAGCGTCCGTCAGCTCTTCCCCTTCGCCCACCCGCACCGCCCTCTCAATTTCAACCAAATCAATTCCGCTGTCAATCACAATTACCACCACATCCGCATTCGCCGCGGAAAACTCACATTATCACCATCACCAAGACTCGCCGCCTTGTGGAACTCCTCTTCTCCCTTCTGCACCGCCGCCGACGCTTCTGCTGCTGCTTCTGCCTCTGCTTCTGAGGTAGTGAGCGATGCTGCTGTGGTCGACGAGGCAGTGCCCGTGAGCGAGGTTGTTCATGAACAGAAGAAGATAAAGGATGCAGCCGACCTGCTCGACATAAGGGTTGGCCGAGTCCTTAAGGCGTGGAGGCATGAGGAGGCTGATTCTCTTTATGTGGAGGAAGTCGACGTTGGTGAGCCCGAACCCAGAATCATCTGCAGTGGCCTTGTCAGATATATTCCTCTTGATCACCTTCAGGATAGAAATGTAGTTGTGCTTGCTAATCTGAAGCCGAGGAACATGCGCGGCGTGAAGTCTAATGGAATGCTTATGGCAGCTTCTGATGCTTCCCATGAGAATGTTGAGCTTCTCGTGCCACCTGAGGGTTCACTCCCTGGTGAAAGAGTATGGTTTGGCTCTGAAGAGGATCACCTAAATCAGCCTCCTGCTGCCTCGCCTAACCAGATTCAGAAGAAAAAGATATGGGAATTGGTGCAACCTCATATGAAGACCGACAATTCTTGTATTGCTTCACTTGGGGAGCATGTAATGCGGACATCTGCAGGTGTGGTAATCTCAACATCTCTGAAAAACGCAAACATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

303

Amino Acids

33.06

Weight (kDa)

9.17

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_bind PF01588 140 - 234 1.4e-29 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 854
Acc36I ACCTGC 2 cut(s) 417, 854
AccI GTMKAC 2 cut(s) 345, 486
AccII CGCG 2 cut(s) 210, 606
AclWI GGATC 1 cut(s) 735
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 3 cut(s) 539, 608, 741
AfiI CCNNNNNNNGG 2 cut(s) 252, 683
AflII CTTAAG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 85, 157
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 474, 506
AluBI AGCT 3 cut(s) 118, 638, 667
AluI AGCT 3 cut(s) 118, 638, 667
AlwI GGATC 1 cut(s) 735
AlwNI CAGNNNCTG 1 cut(s) 641
AoxI GGCC 2 cut(s) 427, 523
ApeKI GCWGC 7 cut(s) 68, 296, 299, 335, 401, 635, 749
AspLEI GCGC 2 cut(s) 98, 606
AsuHPI GGTGA 6 cut(s) 219, 225, 506, 542, 710, 722
AxyI CCTNAGG 1 cut(s) 681
BaeGI GKGCMC 1 cut(s) 360
BanII GRGCYC 1 cut(s) 501
BauI CACGAG 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 815
BbvI GCAGC 7 cut(s) 80, 283, 286, 322, 413, 647, 736
BccI CCATC 1 cut(s) 238
BcgI CGANNNNNNTGC 4 cut(s) 275, 309, 583, 617
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 547
BfmI CTRYAG 2 cut(s) 517, 861
BfrI CTTAAG 1 cut(s) 437
BfuAI ACCTGC 2 cut(s) 417, 854
Bme1390I CCNGG 1 cut(s) 696
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 4 cut(s) 111, 322, 388, 634
BpiI GAAGAC 1 cut(s) 815
BsaJI CCNNGG 3 cut(s) 208, 593, 694
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 683
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 24
Bse21I CCTNAGG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 3 cut(s) 208, 593, 694
BseGI GGATG 2 cut(s) 195, 403
BseLI CCNNNNNNNGG 2 cut(s) 252, 683
BseMII CTCAG 2 cut(s) 309, 672
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 3 cut(s) 64, 250, 470
BseSI GKGCMC 1 cut(s) 360
BseXI GCAGC 7 cut(s) 80, 283, 286, 322, 413, 647, 736
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 2 cut(s) 210, 606
BshFI GGCC 2 cut(s) 429, 525
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 252, 683
BsmI GAATGC 2 cut(s) 201, 630
BsnI GGCC 2 cut(s) 429, 525
Bsp1286I GDGCHC 2 cut(s) 360, 501
Bsp143I GATC 2 cut(s) 547, 727
BspANI GGCC 2 cut(s) 429, 525
BspCNI CTCAG 2 cut(s) 310, 673
BspFNI CGCG 2 cut(s) 210, 606
BspHI TCATGA 1 cut(s) 376
BspMAI CTGCAG 2 cut(s) 521, 865
BspMI ACCTGC 2 cut(s) 417, 854
BspPI GGATC 1 cut(s) 735
BspQI GCTCTTC 1 cut(s) 125
BspTI CTTAAG 1 cut(s) 437
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 208, 593, 694
BssMI GATC 2 cut(s) 547, 727
BssSI CACGAG 1 cut(s) 671
Bst2BI CACGAG 1 cut(s) 671
Bst2UI CCWGG 1 cut(s) 696
Bst6I CTCTTC 3 cut(s) 125, 268, 717
BstAFI CTTAAG 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 850
BstC8I GCNNGC 2 cut(s) 100, 579
BstDEI CTNAG 2 cut(s) 318, 681
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 195, 403
BstFNI CGCG 2 cut(s) 210, 606
BstHHI GCGC 2 cut(s) 98, 606
BstKTI GATC 2 cut(s) 550, 730
BstMBI GATC 2 cut(s) 547, 727
BstMWI GCNNNNNNNGC 7 cut(s) 207, 287, 296, 305, 644, 673, 850
BstNI CCWGG 1 cut(s) 696
BstNSI RCATGY 2 cut(s) 604, 848
BstSCI CCNGG 1 cut(s) 694
BstSFI CTRYAG 2 cut(s) 517, 861
BstSLI GKGCMC 1 cut(s) 360
BstUI CGCG 2 cut(s) 210, 606
BstV1I GCAGC 7 cut(s) 80, 283, 286, 322, 413, 647, 736
BstV2I GAAGAC 1 cut(s) 815
Bsu36I CCTNAGG 1 cut(s) 681
BsuRI GGCC 2 cut(s) 429, 525
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 2 cut(s) 195, 403
BtsI GCAGTG 2 cut(s) 360, 526
BtsIMutI CAGTG 3 cut(s) 31, 360, 526
BveI ACCTGC 2 cut(s) 417, 854
Cac8I GCNNGC 2 cut(s) 100, 579
CaiI CAGNNNCTG 1 cut(s) 641
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 98, 606
Cfr10I RCCGGY 1 cut(s) 98
Cfr42I CCGCGG 1 cut(s) 211
CseI GACGC 2 cut(s) 97, 296
CviAII CATG 5 cut(s) 377, 452, 601, 653, 845
DdeI CTNAG 2 cut(s) 318, 681
DpnI GATC 2 cut(s) 549, 729
DpnII GATC 2 cut(s) 547, 727
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 3 cut(s) 125, 268, 717
EarI CTCTTC 3 cut(s) 125, 268, 717
Eco24I GRGCYC 1 cut(s) 501
Eco57I CTGAAG 3 cut(s) 539, 608, 741
Eco81I CCTNAGG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 5 cut(s) 380, 455, 604, 656, 848
FatI CATG 5 cut(s) 376, 451, 600, 652, 844
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 2 cut(s) 345, 486
FokI GGATG 2 cut(s) 182, 410
FriOI GRGCYC 1 cut(s) 501
GlaI GCGC 2 cut(s) 97, 605
HaeIII GGCC 2 cut(s) 429, 525
HapII CCGG 1 cut(s) 99
HgaI GACGC 2 cut(s) 97, 296
HhaI GCGC 2 cut(s) 98, 606
Hin1II CATG 5 cut(s) 380, 455, 604, 656, 848
Hin6I GCGC 2 cut(s) 96, 604
HinP1I GCGC 2 cut(s) 96, 604
HincII GTYRAC 2 cut(s) 346, 487
HindII GTYRAC 2 cut(s) 346, 487
HinfI GANTC 5 cut(s) 240, 432, 464, 510, 766
HpaII CCGG 1 cut(s) 99
HphI GGTGA 6 cut(s) 219, 225, 506, 542, 710, 722
Hpy166II GTNNAC 3 cut(s) 346, 487, 689
Hpy188I TCNGA 7 cut(s) 319, 533, 588, 643, 721, 771, 888
Hpy188III TCNNGA 3 cut(s) 377, 545, 557
Hpy8I GTNNAC 3 cut(s) 346, 487, 689
Hpy99I CGWCG 3 cut(s) 290, 350, 491
HpyAV CCTTC 3 cut(s) 136, 280, 563
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 5 cut(s) 276, 401, 519, 796, 863
HpyF10VI GCNNNNNNNGC 7 cut(s) 207, 287, 296, 305, 644, 673, 850
HpyF3I CTNAG 2 cut(s) 318, 681
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 5 cut(s) 380, 455, 604, 656, 848
HspAI GCGC 2 cut(s) 96, 604
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 547
KspI CCGCGG 1 cut(s) 211
Kzo9I GATC 2 cut(s) 547, 727
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 841
Lsp1109I GCAGC 7 cut(s) 80, 283, 286, 322, 413, 647, 736
LweI GCATC 4 cut(s) 111, 322, 388, 634
MaeII ACGT 1 cut(s) 489
MalI GATC 2 cut(s) 549, 729
MboI GATC 2 cut(s) 547, 727
MboII GAAGA 7 cut(s) 112, 255, 397, 400, 734, 784, 820
MhlI GDGCHC 2 cut(s) 360, 501
MluCI AATT 5 cut(s) 151, 166, 184, 788, 817
MlyI GAGTC 2 cut(s) 234, 441
MroNI GCCGGC 1 cut(s) 98
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 2 cut(s) 173, 210
MspCI CTTAAG 1 cut(s) 437
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 201, 630
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 2 cut(s) 210, 606
MwoI GCNNNNNNNGC 7 cut(s) 207, 287, 296, 305, 644, 673, 850
NaeI GCCGGC 1 cut(s) 100
NdeI CATATG 1 cut(s) 804
NdeII GATC 2 cut(s) 547, 727
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 5 cut(s) 380, 455, 604, 656, 848
NmeAIII GCCGAG 2 cut(s) 455, 618
NspI RCATGY 2 cut(s) 604, 848
PagI TCATGA 1 cut(s) 376
PaqCI CACCTGC 1 cut(s) 854
PciSI GCTCTTC 1 cut(s) 125
PctI GAATGC 2 cut(s) 201, 630
PdiI GCCGGC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 464, 510, 766
PleI GAGTC 2 cut(s) 234, 440
PpsI GAGTC 2 cut(s) 234, 440
Psp6I CCWGG 1 cut(s) 694
PspGI CCWGG 1 cut(s) 694
PstI CTGCAG 2 cut(s) 521, 865
PstNI CAGNNNCTG 1 cut(s) 641
RseI CAYNNNNRTG 1 cut(s) 657
SacII CCGCGG 1 cut(s) 211
SalI GTCGAC 2 cut(s) 344, 485
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 2 cut(s) 547, 727
SchI GAGTC 2 cut(s) 234, 441
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 2 cut(s) 360, 501
SfaNI GCATC 4 cut(s) 111, 322, 388, 634
SfcI CTRYAG 2 cut(s) 517, 861
Sfr303I CCGCGG 1 cut(s) 211
SgrBI CCGCGG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 5 cut(s) 151, 166, 184, 788, 817
StyD4I CCNGG 1 cut(s) 694
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 345, 414, 486
TaqII GACCGA 1 cut(s) 827
TasI AATT 5 cut(s) 151, 166, 184, 788, 817
TauI GCSGC 4 cut(s) 210, 248, 284, 609
TfiI GAWTC 3 cut(s) 464, 510, 766
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 3 cut(s) 31, 360, 526
TseI GCWGC 7 cut(s) 68, 296, 299, 335, 401, 635, 749
TspDTI ATGAA 4 cut(s) 17, 365, 393, 821
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 3 cut(s) 31, 360, 526
Vha464I CTTAAG 1 cut(s) 437
XceI RCATGY 2 cut(s) 604, 848
XmiI GTMKAC 2 cut(s) 345, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.