RLG00000015603

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014048
Physical Location & Seq
Forward (+)
91316 .. 94608
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015603

Sequence Viewer

Length: 822 bp
ATGGCAGCGAACGTTTTGAAATGCGGCACGGGCATAGGCGCGCGTCTGATATTCCTATCTCCGTCTCCTAAATCTCCACGGCCCTTTGGGCATTCACTTGCTCATTTCCACCAAATCACTGCGGATAGTTATCGTAGTATTTGTAGCAAACCGAAAGTTTGTGATTCTGCTGCTGATGCATCATCACCATCGGCAAGAAGCAGAAGCGTGGTCTCTTTTTGCGCCGCCACAGATGCTTCTTCTGTTGAGGAGGCACAGGTAGAGGCAGAGGCGATAAGCGATGGTGATGAGGAACAGAAAAAGATAAAGGATGCAGCCGACCTGCTTGACATAAGGGTTGGGCTAGTCCTTAGGGCATGGAGGCATGAGGAAGCTGATTCTCTTTACGTGGAAGAGGTTGACATCGGAGAGCCTGAATCCAGAATCATCTGCAGTGGGCTTGTCAATTACATTTCTATTGATCACATTCAGGAGAGAAAAGTAGTTGTCCTTGCTAATCTGAAGCCCAGGAACATGCGGGGTGTCAAGTCTTGTGGAATGCTTATGGCCGCTGCTGATGCTTCCCATGAGAATGTTGAGCTTCTTGTGCCTCCTGAGGGTTCACTTCCTGGCCAAAGGATATGGTTCGGCTCTGAAGATGATCATCAAACTCAGCCTCCTCCTGCCACACCTAACCAGATTCAAAAGAAAAAGATATGGGAGCTGGTGCAACCTCATCTGAAGACAGATGACAATTGTATGGCTATGCTTGGGATGCATATAATGCGGACATCTGCAGGTGTGATAATCAGCAGATCTCTAAAACACGCAAATATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

274

Amino Acids

29.73

Weight (kDa)

6.06

Isoelectric Point (pI)

49.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_bind PF01588 111 - 205 7.2e-28 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 767
Acc36I ACCTGC 2 cut(s) 330, 767
AccII CGCG 2 cut(s) 41, 43
AciI CCGC 6 cut(s) 24, 122, 225, 517, 549, 766
AclI AACGTT 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 546, 610
AcuI CTGAAG 3 cut(s) 521, 654, 740
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 2 cut(s) 19, 683
AjnI CCWGG 2 cut(s) 506, 607
AluBI AGCT 3 cut(s) 374, 580, 703
AluI AGCT 3 cut(s) 374, 580, 703
Alw26I GTCTC 2 cut(s) 69, 217
AoxI GGCC 3 cut(s) 80, 546, 610
ApeKI GCWGC 4 cut(s) 5, 170, 314, 551
AspLEI GCGC 3 cut(s) 41, 43, 224
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 177, 296
AxyI CCTNAGG 2 cut(s) 350, 594
BalI TGGCCA 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 728
BbvI GCAGC 4 cut(s) 17, 157, 326, 538
BccI CCATC 2 cut(s) 196, 275
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 508, 609
BclI TGATCA 2 cut(s) 460, 640
BcoDI GTCTC 2 cut(s) 69, 217
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 430, 774
BfuAI ACCTGC 2 cut(s) 330, 767
BglI GCCNNNNNGGC 1 cut(s) 88
BglII AGATCT 1 cut(s) 794
BisI GCNGC 7 cut(s) 6, 25, 171, 225, 315, 549, 552
BlsI GCNGC 7 cut(s) 7, 26, 172, 226, 316, 550, 553
Bme1390I CCNGG 2 cut(s) 508, 609
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 508, 609
BmsI GCATC 6 cut(s) 166, 188, 223, 301, 547, 744
BpiI GAAGAC 1 cut(s) 728
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 2 cut(s) 129, 642
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 77, 506
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse21I CCTNAGG 2 cut(s) 350, 594
Bse8I GATNNNNATC 2 cut(s) 129, 642
BseBI CCWGG 2 cut(s) 508, 609
BseDI CCNNGG 2 cut(s) 77, 506
BseGI GGATG 2 cut(s) 316, 759
BseJI GATNNNNATC 2 cut(s) 129, 642
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMII CTCAG 2 cut(s) 585, 665
BsePI GCGCGC 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 263, 648
BseXI GCAGC 4 cut(s) 17, 157, 326, 538
Bsh1236I CGCG 2 cut(s) 41, 43
BshFI GGCC 3 cut(s) 82, 548, 612
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 2 cut(s) 69, 217
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 2 cut(s) 91, 543
BsnI GGCC 3 cut(s) 82, 548, 612
Bso31I GGTCTC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 460, 640, 794
BspACI CCGC 6 cut(s) 24, 122, 225, 517, 549, 766
BspANI GGCC 3 cut(s) 82, 548, 612
BspCNI CTCAG 2 cut(s) 586, 664
BspFNI CGCG 2 cut(s) 41, 43
BspMAI CTGCAG 2 cut(s) 434, 778
BspMI ACCTGC 2 cut(s) 330, 767
BspTNI GGTCTC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 77, 506
BssHII GCGCGC 1 cut(s) 39
BssMI GATC 3 cut(s) 460, 640, 794
Bst2UI CCWGG 2 cut(s) 508, 609
Bst6I CTCTTC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 350, 594, 651
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 316, 759
BstFNI CGCG 2 cut(s) 41, 43
BstHHI GCGC 3 cut(s) 41, 43, 224
BstKTI GATC 3 cut(s) 463, 643, 797
BstMAI GTCTC 2 cut(s) 69, 217
BstMBI GATC 3 cut(s) 460, 640, 794
BstMWI GCNNNNNNNGC 8 cut(s) 30, 88, 176, 233, 557, 586, 754, 763
BstNI CCWGG 2 cut(s) 508, 609
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 506, 607
BstSFI CTRYAG 2 cut(s) 430, 774
BstUI CGCG 2 cut(s) 41, 43
BstV1I GCAGC 4 cut(s) 17, 157, 326, 538
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
Bsu36I CCTNAGG 2 cut(s) 350, 594
BsuRI GGCC 3 cut(s) 82, 548, 612
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 316, 759
BtsI GCAGTG 2 cut(s) 117, 439
BtsIMutI CAGTG 2 cut(s) 117, 439
BveI ACCTGC 2 cut(s) 330, 767
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 3 cut(s) 41, 43, 224
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 1 cut(s) 32
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 4 cut(s) 357, 365, 514, 566
DdeI CTNAG 3 cut(s) 350, 594, 651
DpnI GATC 3 cut(s) 462, 642, 796
DpnII GATC 3 cut(s) 460, 640, 794
EaeI YGGCCR 2 cut(s) 546, 610
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 521, 654, 740
Eco81I CCTNAGG 2 cut(s) 350, 594
EcoRII CCWGG 2 cut(s) 506, 607
EcoT22I ATGCAT 2 cut(s) 181, 759
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 360, 368, 517, 569
FatI CATG 4 cut(s) 356, 364, 513, 565
FauI CCCGC 1 cut(s) 510
FbaI TGATCA 2 cut(s) 460, 640
Fnu4HI GCNGC 7 cut(s) 6, 25, 171, 225, 315, 549, 552
FokI GGATG 2 cut(s) 323, 766
Fsp4HI GCNGC 7 cut(s) 6, 25, 171, 225, 315, 549, 552
FspBI CTAG 1 cut(s) 344
GlaI GCGC 3 cut(s) 40, 42, 223
GluI GCNGC 7 cut(s) 6, 25, 171, 225, 315, 549, 552
HaeIII GGCC 3 cut(s) 82, 548, 612
HgaI GACGC 1 cut(s) 32
HhaI GCGC 3 cut(s) 41, 43, 224
Hin1II CATG 4 cut(s) 360, 368, 517, 569
Hin6I GCGC 3 cut(s) 39, 41, 222
HinP1I GCGC 3 cut(s) 39, 41, 222
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 5 cut(s) 164, 377, 416, 423, 679
HphI GGTGA 2 cut(s) 177, 296
Hpy166II GTNNAC 2 cut(s) 400, 602
Hpy188I TCNGA 5 cut(s) 48, 407, 501, 634, 720
Hpy188III TCNNGA 3 cut(s) 420, 470, 593
Hpy8I GTNNAC 2 cut(s) 400, 602
HpyCH4IV ACGT 2 cut(s) 12, 387
HpyCH4V TGCA 6 cut(s) 179, 314, 432, 709, 757, 776
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 88, 176, 233, 557, 586, 754, 763
HpyF3I CTNAG 3 cut(s) 350, 594, 651
HpySE526I ACGT 2 cut(s) 12, 387
Hsp92II CATG 4 cut(s) 360, 368, 517, 569
HspAI GCGC 3 cut(s) 39, 41, 222
Ksp22I TGATCA 2 cut(s) 460, 640
Kzo9I GATC 3 cut(s) 460, 640, 794
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 4 cut(s) 17, 157, 326, 538
LweI GCATC 6 cut(s) 166, 188, 223, 301, 547, 744
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 12, 387
MalI GATC 3 cut(s) 462, 642, 796
MboI GATC 3 cut(s) 460, 640, 794
MboII GAAGA 4 cut(s) 231, 404, 647, 733
MfeI CAATTG 1 cut(s) 733
MflI RGATCY 1 cut(s) 794
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 2 cut(s) 445, 733
MluNI TGGCCA 1 cut(s) 612
Mox20I TGGCCA 1 cut(s) 612
Mph1103I ATGCAT 2 cut(s) 181, 759
MscI TGGCCA 1 cut(s) 612
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 508, 609
MunI CAATTG 1 cut(s) 733
Mva1269I GAATGC 2 cut(s) 91, 543
MvaI CCWGG 2 cut(s) 508, 609
MvnI CGCG 2 cut(s) 41, 43
MwoI GCNNNNNNNGC 8 cut(s) 30, 88, 176, 233, 557, 586, 754, 763
NdeII GATC 3 cut(s) 460, 640, 794
NlaIII CATG 4 cut(s) 360, 368, 517, 569
NsiI ATGCAT 2 cut(s) 181, 759
NspI RCATGY 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 767
PauI GCGCGC 1 cut(s) 39
PctI GAATGC 2 cut(s) 91, 543
PfeI GAWTC 5 cut(s) 164, 377, 416, 423, 679
PkrI GCNGC 7 cut(s) 7, 26, 172, 226, 316, 550, 553
Ppu21I YACGTR 1 cut(s) 388
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 506, 607
PspGI CCWGG 2 cut(s) 506, 607
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 2 cut(s) 434, 778
PsuI RGATCY 1 cut(s) 794
PteI GCGCGC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 570
SatI GCNGC 7 cut(s) 6, 25, 171, 225, 315, 549, 552
Sau3AI GATC 3 cut(s) 460, 640, 794
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 508, 609
SfaNI GCATC 6 cut(s) 166, 188, 223, 301, 547, 744
SfcI CTRYAG 2 cut(s) 430, 774
SmiMI CAYNNNNRTG 1 cut(s) 570
Sse9I AATT 2 cut(s) 445, 733
SsiI CCGC 6 cut(s) 24, 122, 225, 517, 549, 766
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 506, 607
TaiI ACGT 2 cut(s) 15, 390
TasI AATT 2 cut(s) 445, 733
TauI GCSGC 3 cut(s) 27, 227, 551
TfiI GAWTC 5 cut(s) 164, 377, 416, 423, 679
TscAI CASTG 2 cut(s) 124, 439
TseI GCWGC 4 cut(s) 5, 170, 314, 551
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 2 cut(s) 124, 439
XceI RCATGY 1 cut(s) 517
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 2 cut(s) 181, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.