Rorug01G0452100

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014048
Physical Location & Seq
Reverse (-)
54687125 .. 54692383
5259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0452100.1

Sequence Viewer

Length: 963 bp
ATGGAATGCGGCGAAACCTGGATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCATGAATCACTAGCTGGGAAATTCCCTGTTGCTTTTGCCAAACCAATGAGTGATTTCGAAGGTCGGGCAGAATCTGAATTGTATAGGGATTTGCTGTACTCTTTGCAAGATGCTGGGTGCCGGATGAGGCTGCTGGGGGCATTAGCAGTTTTCCTGAAGCCAACAAGAACAGGACTCATGATAGGAGGCCGCCTCACATTGCAGAAGGATATAATTGTGTTCTCGCATTCAGTTTATGTAAGAGTATCCGGTAGCAAGGGGGAAGAATTAAACGGTACTGGTTACACTTTGGCCCAATTTCTGACAGACATCGTAGGTTTCACATCAAAAGTGGGTTTTCATACTGATTTGGATTCCATCGATTACCTTGATGGGAAGATGCTGAAAGATGAGACCAAGACTGGTGTTATGGAATGGGAACCTATGGGATCGAATCCCTTGTATCATCAGGTTGAGAAGAAGCAGCCGGGGATCAAATGGTTGAATTTGTGGGACAGCGCTGAAGGTAAACAAAAATCTAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTGTGGGCGACTATGTGTATGTGAAAGACTCTGAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTCGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATAGAATGCAAGGGTTGTGGTAAGTTGGGACCTGCATGCTGTTCTGAGGGAGGACGTGCTGTTCTCAGGAGGTGTGGTCATTGTTATGATTTTGGTCACTGGGGGGACGTCTGCCCGAACTATAAGTATATGCCCCTTTCGGCCTTCCCACATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

320

Amino Acids

35.73

Weight (kDa)

5.3

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 912
Acc36I ACCTGC 1 cut(s) 841
AccB1I GGYRCC 1 cut(s) 177
AciI CCGC 3 cut(s) 9, 53, 250
AclWI GGATC 4 cut(s) 63, 496, 539, 738
AcsI RAATTY 2 cut(s) 80, 544
AcuI CTGAAG 2 cut(s) 236, 582
AcyI GRCGYC 2 cut(s) 790, 909
AfaI GTAC 2 cut(s) 158, 337
AfeI AGCGCT 1 cut(s) 559
AgsI TTSAA 1 cut(s) 544
AjiI CACGTC 1 cut(s) 857
AjnI CCWGG 3 cut(s) 17, 726, 772
AloI GAACNNNNNNTCC 2 cut(s) 846, 878
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 446, 797
AlwI GGATC 4 cut(s) 63, 496, 539, 738
AlwNI CAGNNNCTG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 559
AoxI GGCC 3 cut(s) 247, 351, 942
ApeKI GCWGC 2 cut(s) 190, 523
ApoI RAATTY 2 cut(s) 80, 544
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 352, 830
AsuC2I CCSGG 1 cut(s) 528
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 830
BanI GGYRCC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 177, 535
BccI CCATC 3 cut(s) 425, 425, 674
BciT130I CCWGG 3 cut(s) 19, 728, 774
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 446, 797
BfaI CTAG 2 cut(s) 71, 758
BfoI RGCGCY 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 841
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 4 cut(s) 10, 191, 250, 524
BlsI GCNGC 4 cut(s) 11, 192, 251, 525
Bme1390I CCNGG 4 cut(s) 19, 528, 728, 774
Bme18I GGWCC 1 cut(s) 830
BmgBI CACGTC 1 cut(s) 857
BmgT120I GGNCC 2 cut(s) 352, 830
BmiI GGNNCC 3 cut(s) 179, 480, 831
BmrFI CCNGG 4 cut(s) 19, 528, 728, 774
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 4 cut(s) 12, 160, 429, 595
BmuI ACTGGG 1 cut(s) 910
BplI GAGNNNNNCTC 2 cut(s) 237, 269
BpmI CTGGAG 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 420
BsaHI GRCGYC 2 cut(s) 790, 909
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 3 cut(s) 45, 527, 752
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bse1I ACTGG 3 cut(s) 343, 466, 905
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 3 cut(s) 19, 728, 774
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 3 cut(s) 45, 527, 752
BseGI GGATG 2 cut(s) 27, 189
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 837, 880
BseNI ACTGG 3 cut(s) 343, 466, 905
BseXI GCAGC 2 cut(s) 177, 535
BseYI CCCAGC 3 cut(s) 74, 173, 193
BshFI GGCC 3 cut(s) 249, 353, 944
BshNI GGYRCC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 420
BsiSI CCGG 4 cut(s) 26, 181, 309, 527
BslFI GGGAC 4 cut(s) 566, 696, 843, 920
BsmAI GTCTC 2 cut(s) 446, 797
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 4 cut(s) 566, 696, 843, 920
BsmI GAATGC 3 cut(s) 11, 286, 812
BsnI GGCC 3 cut(s) 249, 353, 944
Bso31I GGTCTC 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 117
Bsp143I GATC 5 cut(s) 55, 488, 531, 591, 730
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 3 cut(s) 9, 53, 250
BspANI GGCC 3 cut(s) 249, 353, 944
BspCNI CTCAG 2 cut(s) 838, 879
BspDI ATCGAT 1 cut(s) 420
BspHI TCATGA 2 cut(s) 61, 237
BspLI GGNNCC 3 cut(s) 179, 480, 831
BspMI ACCTGC 1 cut(s) 841
BspPI GGATC 4 cut(s) 63, 496, 539, 738
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 3 cut(s) 343, 466, 905
BssECI CCNNGG 3 cut(s) 45, 527, 752
BssMI GATC 5 cut(s) 55, 488, 531, 591, 730
BssNI GRCGYC 2 cut(s) 790, 909
BssT1I CCWWGG 2 cut(s) 45, 752
Bst2UI CCWGG 3 cut(s) 19, 728, 774
Bst4CI ACNGT 3 cut(s) 335, 674, 784
BstACI GRCGYC 2 cut(s) 790, 909
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 838
BstDEI CTNAG 2 cut(s) 846, 866
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 2 cut(s) 27, 189
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 5 cut(s) 58, 491, 534, 594, 733
BstMAI GTCTC 2 cut(s) 446, 797
BstMBI GATC 5 cut(s) 55, 488, 531, 591, 730
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 3 cut(s) 19, 728, 774
BstNSI RCATGY 1 cut(s) 840
BstSCI CCNGG 4 cut(s) 17, 526, 726, 772
BstV1I GCAGC 2 cut(s) 177, 535
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 420
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 3 cut(s) 249, 353, 944
BsuTUI ATCGAT 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 752
BtrI CACGTC 1 cut(s) 857
BtsCI GGATG 2 cut(s) 27, 189
BtsIMutI CAGTG 2 cut(s) 679, 898
BveI ACCTGC 1 cut(s) 841
Cac8I GCNNGC 1 cut(s) 838
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 2 cut(s) 61, 237
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 352, 830
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 779
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 2 cut(s) 157, 336
CspCI CAANNNNNGTGG 2 cut(s) 799, 834
CviAII CATG 5 cut(s) 62, 238, 753, 837, 960
CviJI RGCY 9 cut(s) 44, 74, 190, 220, 249, 353, 526, 757, 944
CviKI_1 RGCY 9 cut(s) 44, 74, 190, 220, 249, 353, 526, 757, 944
CviQI GTAC 2 cut(s) 157, 336
DdeI CTNAG 2 cut(s) 846, 866
DpnI GATC 5 cut(s) 57, 490, 533, 593, 732
DpnII GATC 5 cut(s) 55, 488, 531, 591, 730
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 45, 752
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 830
Eco47III AGCGCT 1 cut(s) 559
Eco57I CTGAAG 2 cut(s) 236, 582
EcoO109I RGGNCCY 1 cut(s) 830
EcoRII CCWGG 3 cut(s) 17, 726, 772
EcoT14I CCWWGG 2 cut(s) 45, 752
ErhI CCWWGG 2 cut(s) 45, 752
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 5 cut(s) 65, 241, 756, 840, 963
FaqI GGGAC 4 cut(s) 566, 696, 843, 920
FatI CATG 5 cut(s) 61, 237, 752, 836, 959
Fnu4HI GCNGC 4 cut(s) 10, 191, 250, 524
FokI GGATG 2 cut(s) 34, 196
Fsp4HI GCNGC 4 cut(s) 10, 191, 250, 524
FspBI CTAG 2 cut(s) 71, 758
GlaI GCGC 1 cut(s) 559
GluI GCNGC 4 cut(s) 10, 191, 250, 524
GsaI CCCAGC 3 cut(s) 78, 177, 197
GsuI CTGGAG 1 cut(s) 630
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 3 cut(s) 249, 353, 944
HapII CCGG 4 cut(s) 26, 181, 309, 527
HgaI GACGC 1 cut(s) 779
HhaI GCGC 1 cut(s) 560
Hin1I GRCGYC 2 cut(s) 790, 909
Hin1II CATG 5 cut(s) 65, 241, 756, 840, 963
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HinfI GANTC 6 cut(s) 65, 131, 234, 413, 493, 653
HpaII CCGG 4 cut(s) 26, 181, 309, 527
Hpy166II GTNNAC 1 cut(s) 569
Hpy188I TCNGA 5 cut(s) 136, 363, 591, 658, 847
Hpy188III TCNNGA 4 cut(s) 62, 214, 238, 868
Hpy8I GTNNAC 1 cut(s) 569
HpyAV CCTTC 6 cut(s) 113, 259, 557, 692, 698, 955
HpyCH4III ACNGT 3 cut(s) 335, 674, 784
HpyCH4IV ACGT 2 cut(s) 856, 909
HpyCH4V TGCA 4 cut(s) 166, 262, 810, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 2 cut(s) 846, 866
HpySE526I ACGT 2 cut(s) 856, 909
Hsp92I GRCGYC 2 cut(s) 790, 909
Hsp92II CATG 5 cut(s) 65, 241, 756, 840, 963
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 5 cut(s) 55, 488, 531, 591, 730
Lsp1109I GCAGC 2 cut(s) 177, 535
LweI GCATC 4 cut(s) 12, 160, 429, 595
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 2 cut(s) 71, 758
MaeII ACGT 2 cut(s) 856, 909
MaeIII GTNAC 2 cut(s) 341, 896
MalI GATC 5 cut(s) 57, 490, 533, 593, 732
MboI GATC 5 cut(s) 55, 488, 531, 591, 730
MboII GAAGA 8 cut(s) 50, 335, 448, 529, 677, 689, 704, 707
MflI RGATCY 1 cut(s) 55
MluCI AATT 7 cut(s) 30, 80, 137, 273, 326, 356, 544
MlyI GAGTC 2 cut(s) 228, 647
MnlI CCTC 7 cut(s) 43, 180, 239, 263, 841, 845, 864
MseI TTAA 2 cut(s) 329, 762
MslI CAYNNNNRTG 1 cut(s) 885
MspI CCGG 4 cut(s) 26, 181, 309, 527
MspR9I CCNGG 4 cut(s) 19, 528, 728, 774
Mva1269I GAATGC 3 cut(s) 11, 286, 812
MvaI CCWGG 3 cut(s) 19, 728, 774
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 528
NcoI CCATGG 1 cut(s) 752
NdeII GATC 5 cut(s) 55, 488, 531, 591, 730
NlaIII CATG 5 cut(s) 65, 241, 756, 840, 963
NlaIV GGNNCC 3 cut(s) 179, 480, 831
NmuCI GTSAC 1 cut(s) 896
NspI RCATGY 1 cut(s) 840
NspV TTCGAA 1 cut(s) 117
PaeI GCATGC 1 cut(s) 840
PagI TCATGA 2 cut(s) 61, 237
PctI GAATGC 3 cut(s) 11, 286, 812
PfeI GAWTC 4 cut(s) 65, 131, 413, 493
PkrI GCNGC 4 cut(s) 11, 192, 251, 525
PleI GAGTC 2 cut(s) 228, 647
PpsI GAGTC 2 cut(s) 228, 647
PpuMI RGGWCCY 1 cut(s) 830
Psp5II RGGWCCY 1 cut(s) 830
Psp6I CCWGG 3 cut(s) 17, 726, 772
PspFI CCCAGC 3 cut(s) 74, 173, 193
PspGI CCWGG 3 cut(s) 17, 726, 772
PspN4I GGNNCC 3 cut(s) 179, 480, 831
PspPI GGNCC 2 cut(s) 352, 830
PspPPI RGGWCCY 1 cut(s) 830
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 158, 337
RsaNI GTAC 2 cut(s) 157, 336
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 2 cut(s) 329, 762
SatI GCNGC 4 cut(s) 10, 191, 250, 524
Sau3AI GATC 5 cut(s) 55, 488, 531, 591, 730
Sau96I GGNCC 2 cut(s) 352, 830
SchI GAGTC 2 cut(s) 228, 647
ScrFI CCNGG 4 cut(s) 19, 528, 728, 774
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 4 cut(s) 12, 160, 429, 595
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 830
SmiMI CAYNNNNRTG 1 cut(s) 885
SphI GCATGC 1 cut(s) 840
Sse9I AATT 7 cut(s) 30, 80, 137, 273, 326, 356, 544
SsiI CCGC 3 cut(s) 9, 53, 250
SspMI CTAG 2 cut(s) 71, 758
StyD4I CCNGG 4 cut(s) 17, 526, 726, 772
StyI CCWWGG 2 cut(s) 45, 752
TaaI ACNGT 3 cut(s) 335, 674, 784
TaiI ACGT 2 cut(s) 859, 912
TaqI TCGA 4 cut(s) 117, 420, 491, 723
TasI AATT 7 cut(s) 30, 80, 137, 273, 326, 356, 544
TatI WGTACW 1 cut(s) 156
TauI GCSGC 2 cut(s) 12, 252
TfiI GAWTC 4 cut(s) 65, 131, 413, 493
Tru1I TTAA 2 cut(s) 329, 762
Tru9I TTAA 2 cut(s) 329, 762
TscAI CASTG 2 cut(s) 679, 905
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 2 cut(s) 190, 523
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 3 cut(s) 50, 78, 389
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 679, 905
VpaK11BI GGWCC 1 cut(s) 830
XapI RAATTY 2 cut(s) 80, 544
XceI RCATGY 1 cut(s) 840
XspI CTAG 2 cut(s) 71, 758
ZraI GACGTC 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.