Prupe.6G126300_v2.0.a1

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014048
Physical Location & Seq
Forward (+)
9704784 .. 9709337
4554 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G126300.1

Sequence Viewer

Length: 834 bp
ATGGCAACGAACCTTTTCAAATGCAGTACTGGCATCGGCGTCCGCCTGCTATTCCCCTTTGCCCATTCTGAGCTTCCTCTTAATTTCCATCAAATTAATTCTGCCATTAATGGTAATTATCATCATCTTGGTCTTCGCAACAAAAAACCCAAACTACCTTCTGCAAGAAGTCTGCTCTGGCACTCATCTTCTTCCTTTTGCACCGCCGCCTCGGCCACCGATGCTTCTGCCACCGGTGCTTCTGGGGCAGTGAGCGATGCTTCTATTGATGAGGCAGTGCCGCCGGTGAGCGACGTCGAGGACCAAAAACAGAGGATAAAGGATGCAGCCGACGTGCTCGACATAAGGGTTGGCCGAGTTCTTAAGGCATGGAGGCATGAGGAGGCTGATTCTCTTTATGTCGAAGAGGTCGACATCGGCGAGCCTGAACCCAGAACAATCTGCAGTGGCCTTGTGAAATATGTTCCTCTTGATCACCTTCAGGATAGAAATGTAGTTGTGCTTGCTAATCTGAAGCCCAGGAACATGCGTGGTGTTAAGTCTAGTGGAATGCTTTTGGCAGCTTCTGATGCTTCCCATGAGAATGTTGAGCTTCTTGTGCCTCCCGAGGGTTCACTCCCTGGCCAAAGAGTATGGTTTGGATCTGAAGATGATCATCAAAATCAGCCTCCTCCTGCCACAGCTAACCAGATTCAAAAGAAAAAGATATGGGAATTGGTGCAACCTCATCTGAAGACTGATGATTCTTGTATTGCTATACTTGGGGGGCATGTAATGCAGACATCTGCAGGCGTGGTAATCTCAAGTTCTCTGAAAAACGCAAATATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

278

Amino Acids

29.97

Weight (kDa)

6.25

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 411
AciI CCGC 4 cut(s) 43, 204, 207, 281
AclWI GGATC 1 cut(s) 649
AcoI YGGCCR 3 cut(s) 213, 352, 622
AcuI CTGAAG 4 cut(s) 464, 533, 666, 752
AcyI GRCGYC 2 cut(s) 39, 294
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 608
AflII CTTAAG 1 cut(s) 362
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 19, 695
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 2 cut(s) 518, 619
AluBI AGCT 4 cut(s) 73, 563, 592, 683
AluI AGCT 4 cut(s) 73, 563, 592, 683
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 649
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 4 cut(s) 213, 352, 448, 622
ApeKI GCWGC 2 cut(s) 326, 560
AseI ATTAAT 2 cut(s) 96, 108
AsiGI ACCGGT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 298, 467
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 1 cut(s) 301
BalI TGGCCA 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 125, 740
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 338, 572
BccI CCATC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 2 cut(s) 520, 621
BclI TGATCA 2 cut(s) 472, 652
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 442, 786
BfrI CTTAAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 4 cut(s) 207, 281, 327, 561
BlsI GCNGC 4 cut(s) 208, 282, 328, 562
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 520, 621
Bme18I GGWCC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 2 cut(s) 520, 621
BmsI GCATC 5 cut(s) 42, 211, 247, 313, 559
BpiI GAAGAC 2 cut(s) 125, 740
BpuEI CTTGAG 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 654
BsaHI GRCGYC 2 cut(s) 39, 294
BsaJI CCNNGG 4 cut(s) 210, 518, 606, 619
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 608
Bse118I RCCGGY 2 cut(s) 233, 283
Bse1I ACTGG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 2 cut(s) 520, 621
BseDI CCNNGG 4 cut(s) 210, 518, 606, 619
BseGI GGATG 1 cut(s) 328
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 608
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 34
BseRI GAGGAG 2 cut(s) 395, 660
BseXI GCAGC 2 cut(s) 338, 572
BshFI GGCC 4 cut(s) 215, 354, 450, 624
BshTI ACCGGT 1 cut(s) 233
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 2 cut(s) 234, 284
BslI CCNNNNNNNGG 1 cut(s) 608
BsmI GAATGC 1 cut(s) 555
BsnI GGCC 4 cut(s) 215, 354, 450, 624
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 472, 641, 652
BspACI CCGC 4 cut(s) 43, 204, 207, 281
BspANI GGCC 4 cut(s) 215, 354, 450, 624
BspCNI CTCAG 1 cut(s) 61
BspMAI CTGCAG 2 cut(s) 446, 790
BspPI GGATC 1 cut(s) 649
BspTI CTTAAG 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 233, 283
BsrI ACTGG 1 cut(s) 34
BssAI RCCGGY 2 cut(s) 233, 283
BssECI CCNNGG 4 cut(s) 210, 518, 606, 619
BssMI GATC 3 cut(s) 472, 641, 652
BssNI GRCGYC 2 cut(s) 39, 294
Bst2UI CCWGG 2 cut(s) 520, 621
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 2 cut(s) 39, 294
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 775
BstC8I GCNNGC 4 cut(s) 47, 422, 504, 790
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 3 cut(s) 475, 644, 655
BstMBI GATC 3 cut(s) 472, 641, 652
BstMWI GCNNNNNNNGC 8 cut(s) 30, 212, 221, 236, 245, 569, 598, 775
BstNI CCWGG 2 cut(s) 520, 621
BstNSI RCATGY 2 cut(s) 529, 773
BstSCI CCNGG 2 cut(s) 518, 619
BstSFI CTRYAG 2 cut(s) 442, 786
BstV1I GCAGC 2 cut(s) 338, 572
BstV2I GAAGAC 2 cut(s) 125, 740
BstX2I RGATCY 1 cut(s) 641
BstYI RGATCY 1 cut(s) 641
BsuRI GGCC 4 cut(s) 215, 354, 450, 624
BtgZI GCGATG 1 cut(s) 270
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 3 cut(s) 255, 282, 451
BtsIMutI CAGTG 3 cut(s) 255, 282, 451
Cac8I GCNNGC 4 cut(s) 47, 422, 504, 790
CaiI CAGNNNCTG 1 cut(s) 566
Cfr10I RCCGGY 2 cut(s) 233, 283
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 27
CspAI ACCGGT 1 cut(s) 233
CviAII CATG 5 cut(s) 369, 377, 526, 578, 770
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 69
DpnI GATC 3 cut(s) 474, 643, 654
DpnII GATC 3 cut(s) 472, 641, 652
EaeI YGGCCR 3 cut(s) 213, 352, 622
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 301
Eco57I CTGAAG 4 cut(s) 464, 533, 666, 752
Eco88I CYCGRG 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 518, 619
FaeI CATG 5 cut(s) 372, 380, 529, 581, 773
FatI CATG 5 cut(s) 368, 376, 525, 577, 769
FbaI TGATCA 2 cut(s) 472, 652
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 207, 281, 327, 561
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 4 cut(s) 207, 281, 327, 561
FspBI CTAG 1 cut(s) 543
GluI GCNGC 4 cut(s) 207, 281, 327, 561
HaeIII GGCC 4 cut(s) 215, 354, 450, 624
HapII CCGG 2 cut(s) 234, 284
HgaI GACGC 1 cut(s) 28
Hin1I GRCGYC 2 cut(s) 39, 294
Hin1II CATG 5 cut(s) 372, 380, 529, 581, 773
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 3 cut(s) 389, 691, 743
HpaII CCGG 2 cut(s) 234, 284
HphI GGTGA 2 cut(s) 298, 467
Hpy166II GTNNAC 2 cut(s) 412, 614
Hpy188I TCNGA 6 cut(s) 70, 513, 568, 646, 732, 813
Hpy188III TCNNGA 3 cut(s) 470, 482, 605
Hpy8I GTNNAC 2 cut(s) 412, 614
Hpy99I CGWCG 3 cut(s) 296, 299, 335
HpyAV CCTTC 2 cut(s) 168, 488
HpyCH4IV ACGT 2 cut(s) 294, 333
HpyCH4V TGCA 8 cut(s) 24, 164, 201, 326, 444, 721, 778, 788
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 212, 221, 236, 245, 569, 598, 775
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 2 cut(s) 294, 333
Hsp92I GRCGYC 2 cut(s) 39, 294
Hsp92II CATG 5 cut(s) 372, 380, 529, 581, 773
Ksp22I TGATCA 2 cut(s) 472, 652
Kzo9I GATC 3 cut(s) 472, 641, 652
Lsp1109I GCAGC 2 cut(s) 338, 572
LweI GCATC 5 cut(s) 42, 211, 247, 313, 559
MaeI CTAG 1 cut(s) 543
MaeII ACGT 2 cut(s) 294, 333
MalI GATC 3 cut(s) 474, 643, 654
MboI GATC 3 cut(s) 472, 641, 652
MboII GAAGA 6 cut(s) 125, 180, 183, 416, 659, 745
MflI RGATCY 1 cut(s) 641
MhlI GDGCHC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 624
MluCI AATT 5 cut(s) 82, 93, 97, 115, 713
MluNI TGGCCA 1 cut(s) 624
Mox20I TGGCCA 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 14
MscI TGGCCA 1 cut(s) 624
MseI TTAA 5 cut(s) 81, 96, 108, 363, 537
MslI CAYNNNNRTG 1 cut(s) 582
Msp20I TGGCCA 1 cut(s) 624
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 2 cut(s) 234, 284
MspR9I CCNGG 2 cut(s) 520, 621
Mva1269I GAATGC 1 cut(s) 555
MvaI CCWGG 2 cut(s) 520, 621
MwoI GCNNNNNNNGC 8 cut(s) 30, 212, 221, 236, 245, 569, 598, 775
NdeII GATC 3 cut(s) 472, 641, 652
NlaIII CATG 5 cut(s) 372, 380, 529, 581, 773
NmeAIII GCCGAG 2 cut(s) 191, 380
NspI RCATGY 2 cut(s) 529, 773
PcsI WCGNNNNNNNCGW 2 cut(s) 408, 417
PctI GAATGC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 389, 691, 743
PinAI ACCGGT 1 cut(s) 233
PkrI GCNGC 4 cut(s) 208, 282, 328, 562
PshBI ATTAAT 2 cut(s) 96, 108
Psp6I CCWGG 2 cut(s) 518, 619
PspGI CCWGG 2 cut(s) 518, 619
PspPI GGNCC 1 cut(s) 301
PstI CTGCAG 2 cut(s) 446, 790
PstNI CAGNNNCTG 1 cut(s) 566
PsuI RGATCY 1 cut(s) 641
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 582
SalI GTCGAC 1 cut(s) 410
SaqAI TTAA 5 cut(s) 81, 96, 108, 363, 537
SatI GCNGC 4 cut(s) 207, 281, 327, 561
Sau3AI GATC 3 cut(s) 472, 641, 652
Sau96I GGNCC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 520, 621
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 5 cut(s) 42, 211, 247, 313, 559
SfcI CTRYAG 2 cut(s) 442, 786
SgrAI CRCCGGYG 2 cut(s) 233, 283
SinI GGWCC 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 362, 802
SmoI CTYRAG 2 cut(s) 362, 802
Sse9I AATT 5 cut(s) 82, 93, 97, 115, 713
SsiI CCGC 4 cut(s) 43, 204, 207, 281
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 518, 619
TaiI ACGT 2 cut(s) 297, 336
TaqI TCGA 4 cut(s) 297, 339, 402, 411
TasI AATT 5 cut(s) 82, 93, 97, 115, 713
TatI WGTACW 1 cut(s) 26
TauI GCSGC 2 cut(s) 209, 283
TfiI GAWTC 3 cut(s) 389, 691, 743
Tru1I TTAA 5 cut(s) 81, 96, 108, 363, 537
Tru9I TTAA 5 cut(s) 81, 96, 108, 363, 537
TscAI CASTG 3 cut(s) 255, 282, 451
TseI GCWGC 2 cut(s) 326, 560
TspRI CASTG 3 cut(s) 255, 282, 451
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 301
VspI ATTAAT 2 cut(s) 96, 108
XceI RCATGY 2 cut(s) 529, 773
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 543
ZraI GACGTC 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.