DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24120 AT2G24120 |
| fragaria_vesca | FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 |
| malus_domestica | MD02G1004800.v1.1 |
| prunus_persica | Prupe.7G266200_v2.0.a1 Prupe.7G266200_v2.0.a1 |
| pyrus_communis | pycom02g00340 pycom15g13310 |
| rosa_chinensis | RchiOBHm_Chr2g0085221 |
| rosa_laevigata | RLG00000015668 |
| rosa_multiflora | Rmu_sc0008510.1_g000002 Rmu_sc0011989.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00155550 |
| rosa_rugosa | Rorug01G0458400 |
| rosa_samantha | Rh2AG006900 Rh2BG007500 Rh2CG008300 Rh2DG008600 |
| rosa_wichuraiana | Rw2G000660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 474 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| Acc36I | ACCTGC | 3 cut(s) | 1075, 1294, 2119 |
| Acc65I | GGTACC | 1 cut(s) | 277 |
| AccB1I | GGYRCC | 3 cut(s) | 277, 511, 1216 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1230 |
| AccI | GTMKAC | 2 cut(s) | 808, 2121 |
| AccII | CGCG | 2 cut(s) | 1094, 2293 |
| AccIII | TCCGGA | 1 cut(s) | 1760 |
| AclWI | GGATC | 5 cut(s) | 1142, 1300, 1496, 1509, 1919 |
| AcoI | YGGCCR | 3 cut(s) | 756, 1663, 2373 |
| AcsI | RAATTY | 5 cut(s) | 259, 1512, 1730, 2629, 2809 |
| AcuI | CTGAAG | 6 cut(s) | 1758, 1796, 1941, 2247, 2448, 2543 |
| AcvI | CACGTG | 1 cut(s) | 2420 |
| AcyI | GRCGYC | 1 cut(s) | 512 |
| AfaI | GTAC | 7 cut(s) | 279, 407, 1241, 1285, 1479, 2145, 2637 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 957, 1230, 1386, 1895, 2239, 2870 |
| AflII | CTTAAG | 1 cut(s) | 1592 |
| AflIII | ACRYGT | 1 cut(s) | 877 |
| AjnI | CCWGG | 4 cut(s) | 306, 950, 1105, 1452 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 119, 151 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2605, 2637 |
| Alw21I | GWGCWC | 2 cut(s) | 747, 2787 |
| Alw26I | GTCTC | 3 cut(s) | 434, 1057, 2157 |
| Alw44I | GTGCAC | 1 cut(s) | 743 |
| AlwI | GGATC | 5 cut(s) | 1142, 1300, 1496, 1509, 1919 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2566 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| Aor13HI | TCCGGA | 1 cut(s) | 1760 |
| ApaLI | GTGCAC | 1 cut(s) | 743 |
| ApoI | RAATTY | 5 cut(s) | 259, 1512, 1730, 2629, 2809 |
| AseI | ATTAAT | 1 cut(s) | 1392 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1324, 1470 |
| Asp718I | GGTACC | 1 cut(s) | 277 |
| AspLEI | GCGC | 4 cut(s) | 514, 595, 628, 2293 |
| AspS9I | GGNCC | 6 cut(s) | 310, 661, 1049, 1357, 2176, 2746 |
| AsuHPI | GGTGA | 6 cut(s) | 706, 1974, 2254, 2347, 2453, 2885 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 4 cut(s) | 310, 1049, 2176, 2746 |
| BaeGI | GKGCMC | 2 cut(s) | 747, 1257 |
| BalI | TGGCCA | 1 cut(s) | 758 |
| BamHI | GGATCC | 1 cut(s) | 1501 |
| BanI | GGYRCC | 3 cut(s) | 277, 511, 1216 |
| BanII | GRGCYC | 1 cut(s) | 2787 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1914, 1946 |
| BbrPI | CACGTG | 1 cut(s) | 2420 |
| BbsI | GAAGAC | 4 cut(s) | 61, 827, 1339, 2495 |
| Bbv12I | GWGCWC | 2 cut(s) | 747, 2787 |
| BbvCI | CCTCAGC | 1 cut(s) | 416 |
| BceAI | ACGGC | 2 cut(s) | 508, 2631 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 755, 789, 1160, 1194 |
| BciT130I | CCWGG | 4 cut(s) | 308, 952, 1107, 1454 |
| BciVI | GTATCC | 1 cut(s) | 955 |
| BcoDI | GTCTC | 3 cut(s) | 434, 1057, 2157 |
| BfaI | CTAG | 6 cut(s) | 1154, 1296, 1431, 1940, 2498, 2816 |
| BfmI | CTRYAG | 3 cut(s) | 809, 2680, 2788 |
| BfoI | RGCGCY | 1 cut(s) | 515 |
| BfrI | CTTAAG | 1 cut(s) | 1592 |
| BfuAI | ACCTGC | 3 cut(s) | 1075, 1294, 2119 |
| BfuI | GTATCC | 1 cut(s) | 955 |
| BlpI | GCTNAGC | 1 cut(s) | 972 |
| Bme1390I | CCNGG | 4 cut(s) | 308, 952, 1107, 1454 |
| Bme18I | GGWCC | 4 cut(s) | 310, 1049, 2176, 2746 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 6 cut(s) | 310, 661, 1049, 1357, 2176, 2746 |
| BmiI | GGNNCC | 7 cut(s) | 279, 312, 513, 707, 1218, 1503, 2178 |
| BmrFI | CCNGG | 4 cut(s) | 308, 952, 1107, 1454 |
| BmsI | GCATC | 4 cut(s) | 1329, 1431, 1690, 2677 |
| BpiI | GAAGAC | 4 cut(s) | 61, 827, 1339, 2495 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 43, 75, 1555, 1587 |
| BpmI | CTGGAG | 2 cut(s) | 70, 2121 |
| Bpu10I | CCTNAGC | 2 cut(s) | 416, 579 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 972 |
| BpuEI | CTTGAG | 1 cut(s) | 2825 |
| BsaAI | YACGTR | 1 cut(s) | 2420 |
| BsaHI | GRCGYC | 1 cut(s) | 512 |
| BsaI | GGTCTC | 1 cut(s) | 1057 |
| BsaJI | CCNNGG | 8 cut(s) | 317, 950, 951, 1092, 1106, 2055, 2395, 2451 |
| BsaWI | WCCGGW | 2 cut(s) | 1760, 2232 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 101, 113, 131, 143, 1516, 1546, 2839, 2869 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 957, 1230, 1386, 1895, 2239, 2870 |
| Bse118I | RCCGGY | 1 cut(s) | 646 |
| Bse1I | ACTGG | 2 cut(s) | 912, 1036 |
| Bse3DI | GCAATG | 3 cut(s) | 573, 1443, 2038 |
| BseAI | TCCGGA | 1 cut(s) | 1760 |
| BseBI | CCWGG | 4 cut(s) | 308, 952, 1107, 1454 |
| BseDI | CCNNGG | 8 cut(s) | 317, 950, 951, 1092, 1106, 2055, 2395, 2451 |
| BseGI | GGATG | 6 cut(s) | 303, 1633, 1681, 2010, 2026, 2692 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 957, 1230, 1386, 1895, 2239, 2870 |
| BseMI | GCAATG | 3 cut(s) | 573, 1443, 2038 |
| BseMII | CTCAG | 7 cut(s) | 190, 407, 554, 839, 860, 1488, 2139 |
| BseNI | ACTGG | 2 cut(s) | 912, 1036 |
| BseRI | GAGGAG | 5 cut(s) | 7, 10, 433, 436, 2484 |
| BseSI | GKGCMC | 2 cut(s) | 747, 1257 |
| BseYI | CCCAGC | 1 cut(s) | 976 |
| BsgI | GTGCAG | 1 cut(s) | 2400 |
| Bsh1236I | CGCG | 2 cut(s) | 1094, 2293 |
| BshNI | GGYRCC | 3 cut(s) | 277, 511, 1216 |
| BsiHKAI | GWGCWC | 2 cut(s) | 747, 2787 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BsiSI | CCGG | 4 cut(s) | 647, 1164, 1761, 2233 |
| BslFI | GGGAC | 1 cut(s) | 67 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 957, 1230, 1386, 1895, 2239, 2870 |
| BsmAI | GTCTC | 3 cut(s) | 434, 1057, 2157 |
| BsmBI | CGTCTC | 1 cut(s) | 434 |
| BsmFI | GGGAC | 1 cut(s) | 67 |
| BsmI | GAATGC | 1 cut(s) | 1567 |
| Bso31I | GGTCTC | 1 cut(s) | 1057 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 3 cut(s) | 747, 1257, 2787 |
| Bsp13I | TCCGGA | 1 cut(s) | 1760 |
| Bsp1407I | TGTACA | 1 cut(s) | 2635 |
| Bsp143I | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 972 |
| Bsp19I | CCATGG | 1 cut(s) | 317 |
| BspCNI | CTCAG | 7 cut(s) | 189, 408, 555, 840, 861, 1489, 2138 |
| BspEI | TCCGGA | 1 cut(s) | 1760 |
| BspFNI | CGCG | 2 cut(s) | 1094, 2293 |
| BspLI | GGNNCC | 7 cut(s) | 279, 312, 513, 707, 1218, 1503, 2178 |
| BspMAI | CTGCAG | 1 cut(s) | 2684 |
| BspMI | ACCTGC | 3 cut(s) | 1075, 1294, 2119 |
| BspPI | GGATC | 5 cut(s) | 1142, 1300, 1496, 1509, 1919 |
| BspT107I | GGYRCC | 3 cut(s) | 277, 511, 1216 |
| BspTI | CTTAAG | 1 cut(s) | 1592 |
| BspTNI | GGTCTC | 1 cut(s) | 1057 |
| BsrDI | GCAATG | 3 cut(s) | 573, 1443, 2038 |
| BsrFI | RCCGGY | 1 cut(s) | 646 |
| BsrGI | TGTACA | 1 cut(s) | 2635 |
| BsrI | ACTGG | 2 cut(s) | 912, 1036 |
| BssAI | RCCGGY | 1 cut(s) | 646 |
| BssECI | CCNNGG | 8 cut(s) | 317, 950, 951, 1092, 1106, 2055, 2395, 2451 |
| BssMI | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| BssNAI | GTATAC | 1 cut(s) | 2122 |
| BssNI | GRCGYC | 1 cut(s) | 512 |
| BssT1I | CCWWGG | 4 cut(s) | 317, 2055, 2395, 2451 |
| Bst1107I | GTATAC | 1 cut(s) | 2122 |
| Bst2UI | CCWGG | 4 cut(s) | 308, 952, 1107, 1454 |
| Bst4CI | ACNGT | 5 cut(s) | 1935, 1993, 2254, 2525, 2651 |
| Bst6I | CTCTTC | 5 cut(s) | 110, 140, 160, 2056, 2562 |
| BstACI | GRCGYC | 1 cut(s) | 512 |
| BstAFI | CTTAAG | 1 cut(s) | 1592 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 925 |
| BstAUI | TGTACA | 1 cut(s) | 2635 |
| BstBAI | YACGTR | 1 cut(s) | 2420 |
| BstDSI | CCRYGG | 2 cut(s) | 317, 1092 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 955, 2868 |
| BstF5I | GGATG | 6 cut(s) | 303, 1633, 1681, 2010, 2026, 2692 |
| BstFNI | CGCG | 2 cut(s) | 1094, 2293 |
| BstH2I | RGCGCY | 1 cut(s) | 515 |
| BstHHI | GCGC | 4 cut(s) | 514, 595, 628, 2293 |
| BstKTI | GATC | 6 cut(s) | 1150, 1295, 1462, 1504, 1711, 1927 |
| BstMAI | GTCTC | 3 cut(s) | 434, 1057, 2157 |
| BstMBI | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 11, 520, 592, 925, 1541, 2204, 2369, 2430 |
| BstNI | CCWGG | 4 cut(s) | 308, 952, 1107, 1454 |
| BstNSI | RCATGY | 1 cut(s) | 2739 |
| BstSCI | CCNGG | 4 cut(s) | 306, 950, 1105, 1452 |
| BstSFI | CTRYAG | 3 cut(s) | 809, 2680, 2788 |
| BstSLI | GKGCMC | 2 cut(s) | 747, 1257 |
| BstUI | CGCG | 2 cut(s) | 1094, 2293 |
| BstV2I | GAAGAC | 4 cut(s) | 61, 827, 1339, 2495 |
| BstX2I | RGATCY | 3 cut(s) | 1292, 1501, 1924 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2021 |
| BstYI | RGATCY | 3 cut(s) | 1292, 1501, 1924 |
| BstZ17I | GTATAC | 1 cut(s) | 2122 |
| BsuI | GTATCC | 1 cut(s) | 955 |
| BtgI | CCRYGG | 2 cut(s) | 317, 1092 |
| BtsCI | GGATG | 6 cut(s) | 303, 1633, 1681, 2010, 2026, 2692 |
| BtsIMutI | CAGTG | 3 cut(s) | 1584, 1940, 2334 |
| BveI | ACCTGC | 3 cut(s) | 1075, 1294, 2119 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2566 |
| CfoI | GCGC | 4 cut(s) | 514, 595, 628, 2293 |
| Cfr10I | RCCGGY | 1 cut(s) | 646 |
| Cfr13I | GGNCC | 6 cut(s) | 310, 661, 1049, 1357, 2176, 2746 |
| Cfr42I | CCGCGG | 1 cut(s) | 1095 |
| CseI | GACGC | 1 cut(s) | 315 |
| Csp6I | GTAC | 7 cut(s) | 278, 406, 1240, 1284, 1478, 2144, 2636 |
| CviQI | GTAC | 7 cut(s) | 278, 406, 1240, 1284, 1478, 2144, 2636 |
| DinI | GGCGCC | 1 cut(s) | 513 |
| DpnI | GATC | 6 cut(s) | 1149, 1294, 1461, 1503, 1710, 1926 |
| DpnII | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| EaeI | YGGCCR | 3 cut(s) | 756, 1663, 2373 |
| Eam1104I | CTCTTC | 5 cut(s) | 110, 140, 160, 2056, 2562 |
| EarI | CTCTTC | 5 cut(s) | 110, 140, 160, 2056, 2562 |
| EciI | GGCGGA | 4 cut(s) | 452, 665, 1402, 1849 |
| Ecl136II | GAGCTC | 1 cut(s) | 2785 |
| Eco130I | CCWWGG | 4 cut(s) | 317, 2055, 2395, 2451 |
| Eco147I | AGGCCT | 1 cut(s) | 1452 |
| Eco24I | GRGCYC | 1 cut(s) | 2787 |
| Eco31I | GGTCTC | 1 cut(s) | 1057 |
| Eco32I | GATATC | 1 cut(s) | 1839 |
| Eco47I | GGWCC | 4 cut(s) | 310, 1049, 2176, 2746 |
| Eco53kI | GAGCTC | 1 cut(s) | 2785 |
| Eco57I | CTGAAG | 6 cut(s) | 1758, 1796, 1941, 2247, 2448, 2543 |
| Eco72I | CACGTG | 1 cut(s) | 2420 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| EcoICRI | GAGCTC | 1 cut(s) | 2785 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 955, 2868 |
| EcoO109I | RGGNCCY | 3 cut(s) | 310, 1357, 2176 |
| EcoRI | GAATTC | 1 cut(s) | 259 |
| EcoRII | CCWGG | 4 cut(s) | 306, 950, 1105, 1452 |
| EcoRV | GATATC | 1 cut(s) | 1839 |
| EcoT14I | CCWWGG | 4 cut(s) | 317, 2055, 2395, 2451 |
| EcoT22I | ATGCAT | 3 cut(s) | 678, 1683, 2737 |
| EcoT38I | GRGCYC | 1 cut(s) | 2787 |
| EgeI | GGCGCC | 1 cut(s) | 513 |
| EheI | GGCGCC | 1 cut(s) | 513 |
| ErhI | CCWWGG | 4 cut(s) | 317, 2055, 2395, 2451 |
| Esp3I | CGTCTC | 1 cut(s) | 434 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2053, 2085 |
| FaqI | GGGAC | 1 cut(s) | 67 |
| FauI | CCCGC | 1 cut(s) | 489 |
| FauNDI | CATATG | 2 cut(s) | 1188, 1825 |
| FblI | GTMKAC | 2 cut(s) | 808, 2121 |
| FokI | GGATG | 6 cut(s) | 290, 1640, 1668, 1997, 2033, 2699 |
| FriOI | GRGCYC | 1 cut(s) | 2787 |
| FspBI | CTAG | 6 cut(s) | 1154, 1296, 1431, 1940, 2498, 2816 |
| GlaI | GCGC | 4 cut(s) | 513, 594, 627, 2292 |
| GsaI | CCCAGC | 1 cut(s) | 980 |
| GsuI | CTGGAG | 2 cut(s) | 70, 2121 |
| HaeII | RGCGCY | 1 cut(s) | 515 |
| HapII | CCGG | 4 cut(s) | 647, 1164, 1761, 2233 |
| HgaI | GACGC | 1 cut(s) | 315 |
| HhaI | GCGC | 4 cut(s) | 514, 595, 628, 2293 |
| Hin1I | GRCGYC | 1 cut(s) | 512 |
| Hin6I | GCGC | 4 cut(s) | 512, 593, 626, 2291 |
| HinP1I | GCGC | 4 cut(s) | 512, 593, 626, 2291 |
| HincII | GTYRAC | 3 cut(s) | 361, 2089, 2847 |
| HindII | GTYRAC | 3 cut(s) | 361, 2089, 2847 |
| HindIII | AAGCTT | 4 cut(s) | 680, 1550, 1817, 2821 |
| HpaII | CCGG | 4 cut(s) | 647, 1164, 1761, 2233 |
| HphI | GGTGA | 6 cut(s) | 706, 1974, 2254, 2347, 2453, 2885 |
| Hpy99I | CGWCG | 2 cut(s) | 248, 331 |
| HpyCH4III | ACNGT | 5 cut(s) | 1935, 1993, 2254, 2525, 2651 |
| HpyCH4IV | ACGT | 3 cut(s) | 877, 1410, 2419 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 11, 520, 592, 925, 1541, 2204, 2369, 2430 |
| HpySE526I | ACGT | 3 cut(s) | 877, 1410, 2419 |
| Hsp92I | GRCGYC | 1 cut(s) | 512 |
| HspAI | GCGC | 4 cut(s) | 512, 593, 626, 2291 |
| KasI | GGCGCC | 1 cut(s) | 511 |
| Kpn2I | TCCGGA | 1 cut(s) | 1760 |
| KpnI | GGTACC | 1 cut(s) | 281 |
| KroI | GCCGGC | 1 cut(s) | 646 |
| KroNI | GCCGGC | 1 cut(s) | 648 |
| KspI | CCGCGG | 1 cut(s) | 1095 |
| Kzo9I | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| LmnI | GCTCC | 2 cut(s) | 583, 2782 |
| LweI | GCATC | 4 cut(s) | 1329, 1431, 1690, 2677 |
| MaeI | CTAG | 6 cut(s) | 1154, 1296, 1431, 1940, 2498, 2816 |
| MaeII | ACGT | 3 cut(s) | 877, 1410, 2419 |
| MaeIII | GTNAC | 5 cut(s) | 1580, 2275, 2380, 2585, 2873 |
| MalI | GATC | 6 cut(s) | 1149, 1294, 1461, 1503, 1710, 1926 |
| MboI | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| MflI | RGATCY | 3 cut(s) | 1292, 1501, 1924 |
| MhlI | GDGCHC | 3 cut(s) | 747, 1257, 2787 |
| MlsI | TGGCCA | 1 cut(s) | 758 |
| MluCI | AATT | 8 cut(s) | 206, 259, 1512, 1730, 2237, 2457, 2629, 2809 |
| MluNI | TGGCCA | 1 cut(s) | 758 |
| Mly113I | GGCGCC | 1 cut(s) | 512 |
| MlyI | GAGTC | 6 cut(s) | 218, 389, 1161, 2377, 2711, 2722 |
| MmeI | TCCRAC | 4 cut(s) | 144, 150, 1529, 2465 |
| Mox20I | TGGCCA | 1 cut(s) | 758 |
| Mph1103I | ATGCAT | 3 cut(s) | 678, 1683, 2737 |
| MroI | TCCGGA | 1 cut(s) | 1760 |
| MroNI | GCCGGC | 1 cut(s) | 646 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1324, 1470 |
| MscI | TGGCCA | 1 cut(s) | 758 |
| MseI | TTAA | 9 cut(s) | 432, 531, 1001, 1085, 1392, 1407, 1554, 1593, 1970 |
| MslI | CAYNNNNRTG | 5 cut(s) | 752, 1860, 2019, 2663, 2736 |
| Msp20I | TGGCCA | 1 cut(s) | 758 |
| MspA1I | CMGCKG | 4 cut(s) | 48, 1094, 1919, 2081 |
| MspCI | CTTAAG | 1 cut(s) | 1592 |
| MspI | CCGG | 4 cut(s) | 647, 1164, 1761, 2233 |
| MspR9I | CCNGG | 4 cut(s) | 308, 952, 1107, 1454 |
| Mva1269I | GAATGC | 1 cut(s) | 1567 |
| MvaI | CCWGG | 4 cut(s) | 308, 952, 1107, 1454 |
| MvnI | CGCG | 2 cut(s) | 1094, 2293 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 11, 520, 592, 925, 1541, 2204, 2369, 2430 |
| NaeI | GCCGGC | 1 cut(s) | 648 |
| NarI | GGCGCC | 1 cut(s) | 512 |
| NcoI | CCATGG | 1 cut(s) | 317 |
| NdeI | CATATG | 2 cut(s) | 1188, 1825 |
| NdeII | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| NgoMIV | GCCGGC | 1 cut(s) | 646 |
| NlaIV | GGNNCC | 7 cut(s) | 279, 312, 513, 707, 1218, 1503, 2178 |
| NmeAIII | GCCGAG | 2 cut(s) | 540, 1691 |
| NmuCI | GTSAC | 4 cut(s) | 1580, 2275, 2380, 2873 |
| NsiI | ATGCAT | 3 cut(s) | 678, 1683, 2737 |
| NspI | RCATGY | 1 cut(s) | 2739 |
| PaeR7I | CTCGAG | 1 cut(s) | 254 |
| PasI | CCCWGGG | 1 cut(s) | 951 |
| PceI | AGGCCT | 1 cut(s) | 1452 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 252 |
| PctI | GAATGC | 1 cut(s) | 1567 |
| PdiI | GCCGGC | 1 cut(s) | 648 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1324, 1470 |
| PfeI | GAWTC | 8 cut(s) | 250, 297, 778, 1195, 1693, 1780, 1874, 2755 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1230 |
| PfoI | TCCNGGA | 1 cut(s) | 306 |
| PleI | GAGTC | 6 cut(s) | 218, 388, 1161, 2377, 2711, 2722 |
| PluTI | GGCGCC | 1 cut(s) | 515 |
| PmaCI | CACGTG | 1 cut(s) | 2420 |
| PmlI | CACGTG | 1 cut(s) | 2420 |
| PpsI | GAGTC | 6 cut(s) | 218, 388, 1161, 2377, 2711, 2722 |
| Ppu21I | YACGTR | 1 cut(s) | 2420 |
| PpuMI | RGGWCCY | 2 cut(s) | 310, 2176 |
| PshBI | ATTAAT | 1 cut(s) | 1392 |
| PsiI | TTATAA | 1 cut(s) | 474 |
| Psp124BI | GAGCTC | 1 cut(s) | 2787 |
| Psp5II | RGGWCCY | 2 cut(s) | 310, 2176 |
| Psp6I | CCWGG | 4 cut(s) | 306, 950, 1105, 1452 |
| PspCI | CACGTG | 1 cut(s) | 2420 |
| PspFI | CCCAGC | 1 cut(s) | 976 |
| PspGI | CCWGG | 4 cut(s) | 306, 950, 1105, 1452 |
| PspN4I | GGNNCC | 7 cut(s) | 279, 312, 513, 707, 1218, 1503, 2178 |
| PspPI | GGNCC | 6 cut(s) | 310, 661, 1049, 1357, 2176, 2746 |
| PspPPI | RGGWCCY | 2 cut(s) | 310, 2176 |
| PstI | CTGCAG | 1 cut(s) | 2684 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2566 |
| PsuI | RGATCY | 3 cut(s) | 1292, 1501, 1924 |
| PvuII | CAGCTG | 2 cut(s) | 48, 1919 |
| RsaI | GTAC | 7 cut(s) | 279, 407, 1241, 1285, 1479, 2145, 2637 |
| RsaNI | GTAC | 7 cut(s) | 278, 406, 1240, 1284, 1478, 2144, 2636 |
| RseI | CAYNNNNRTG | 5 cut(s) | 752, 1860, 2019, 2663, 2736 |
| SacI | GAGCTC | 1 cut(s) | 2787 |
| SacII | CCGCGG | 1 cut(s) | 1095 |
| SaqAI | TTAA | 9 cut(s) | 432, 531, 1001, 1085, 1392, 1407, 1554, 1593, 1970 |
| Sau3AI | GATC | 6 cut(s) | 1147, 1292, 1459, 1501, 1708, 1924 |
| Sau96I | GGNCC | 6 cut(s) | 310, 661, 1049, 1357, 2176, 2746 |
| SbfI | CCTGCAGG | 1 cut(s) | 2684 |
| SchI | GAGTC | 6 cut(s) | 218, 389, 1161, 2377, 2711, 2722 |
| ScrFI | CCNGG | 4 cut(s) | 308, 952, 1107, 1454 |
| SdaI | CCTGCAGG | 1 cut(s) | 2684 |
| SduI | GDGCHC | 3 cut(s) | 747, 1257, 2787 |
| SfaNI | GCATC | 4 cut(s) | 1329, 1431, 1690, 2677 |
| SfcI | CTRYAG | 3 cut(s) | 809, 2680, 2788 |
| SfoI | GGCGCC | 1 cut(s) | 513 |
| Sfr274I | CTCGAG | 1 cut(s) | 254 |
| Sfr303I | CCGCGG | 1 cut(s) | 1095 |
| SgrBI | CCGCGG | 1 cut(s) | 1095 |
| SinI | GGWCC | 4 cut(s) | 310, 1049, 2176, 2746 |
| SlaI | CTCGAG | 1 cut(s) | 254 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 752, 1860, 2019, 2663, 2736 |
| SmlI | CTYRAG | 3 cut(s) | 254, 1592, 2804 |
| SmoI | CTYRAG | 3 cut(s) | 254, 1592, 2804 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2684 |
| Sse9I | AATT | 8 cut(s) | 206, 259, 1512, 1730, 2237, 2457, 2629, 2809 |
| SseBI | AGGCCT | 1 cut(s) | 1452 |
| SspDI | GGCGCC | 1 cut(s) | 511 |
| SspI | AATATT | 1 cut(s) | 1324 |
| SspMI | CTAG | 6 cut(s) | 1154, 1296, 1431, 1940, 2498, 2816 |
| SstI | GAGCTC | 1 cut(s) | 2787 |
| StuI | AGGCCT | 1 cut(s) | 1452 |
| StyD4I | CCNGG | 4 cut(s) | 306, 950, 1105, 1452 |
| StyI | CCWWGG | 4 cut(s) | 317, 2055, 2395, 2451 |
| TaaI | ACNGT | 5 cut(s) | 1935, 1993, 2254, 2525, 2651 |
| TaiI | ACGT | 3 cut(s) | 880, 1413, 2422 |
| TaqI | TCGA | 7 cut(s) | 246, 255, 383, 1170, 1362, 1717, 2880 |
| TasI | AATT | 8 cut(s) | 206, 259, 1512, 1730, 2237, 2457, 2629, 2809 |
| TatI | WGTACW | 2 cut(s) | 405, 2635 |
| TauI | GCSGC | 5 cut(s) | 1094, 1097, 1747, 2084, 2375 |
| TfiI | GAWTC | 8 cut(s) | 250, 297, 778, 1195, 1693, 1780, 1874, 2755 |
| Tru1I | TTAA | 9 cut(s) | 432, 531, 1001, 1085, 1392, 1407, 1554, 1593, 1970 |
| Tru9I | TTAA | 9 cut(s) | 432, 531, 1001, 1085, 1392, 1407, 1554, 1593, 1970 |
| TscAI | CASTG | 3 cut(s) | 1591, 1940, 2341 |
| TseFI | GTSAC | 4 cut(s) | 1580, 2275, 2380, 2873 |
| Tsp45I | GTSAC | 4 cut(s) | 1580, 2275, 2380, 2873 |
| TspGWI | ACGGA | 2 cut(s) | 217, 458 |
| TspRI | CASTG | 3 cut(s) | 1591, 1940, 2341 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1230 |
| Vha464I | CTTAAG | 1 cut(s) | 1592 |
| VneI | GTGCAC | 1 cut(s) | 743 |
| VpaK11BI | GGWCC | 4 cut(s) | 310, 1049, 2176, 2746 |
| VspI | ATTAAT | 1 cut(s) | 1392 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 955, 2868 |
| XapI | RAATTY | 5 cut(s) | 259, 1512, 1730, 2629, 2809 |
| XceI | RCATGY | 1 cut(s) | 2739 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 1043, 2383, 2417 |
| XhoI | CTCGAG | 1 cut(s) | 254 |
| XmiI | GTMKAC | 2 cut(s) | 808, 2121 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1324, 1470 |
| XspI | CTAG | 6 cut(s) | 1154, 1296, 1431, 1940, 2498, 2816 |
| Zsp2I | ATGCAT | 3 cut(s) | 678, 1683, 2737 |