Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009158

Physical Location & Seq

Genomic Coordinates Reverse (-)

731234 .. 743060

Gene Structure 11827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2601 bp

ATGGCTTCCACAGCCTCCTCATTCTCTCCAACCCCTCCTCATGCTCAGGGCTGGAGAAGACCTCCCAAACTCCATAACCACAAGTCCCTCAAAAACCTTCACTTTCTCTTCAGCTCAACCTCCAACTCCAACACCCTCTTCTTCAAGCCCTCACTCTCTTCCTCCACTCATTTCCCTCTCAGCCTCAAACCCACTCCAGACCCAGTTCAGTTCCACCAGCTAAACGACTCCGTCCAAGACAATCTCGTCGAAAACCTCGAGAATTCCATGAAATTCCAGGTACCCATCACCGAATTTCACCTAGTTAAGTCTCCAGAGTCGTCCCCAAGAATCTTCATCCAAGACCCACCATGGATTGCGTCCCTCTTTCTGAAGGGTATGTTCAAGAAAGCCAATAAAGAACTGAAATTGGAGTCGAAGGAAATCGATAGGAGGAAGTACAATCTGCTGAGGAGGAGGCAGATTAAGGCGGAGACTGAGGCGTGGGAGAAGATGGTGGATGAGTATAAGGACTTGGAGAGAGTAATGCGTGAGAAGAAGCTGGCTCCGAGCTTGCCTTATGTAAAGGCCTTGTTTTTGGGGTGGTTTGAGCCACTGAGGGAGGCCATTGCTAAGGAGCAGAAGGCACAGCAAACCAAGAAGCACAAGGCAGCGTTTGCGCCGCACATTGATTTGTTGCCCGCGGATAAGATGGCACTGATTGTAATGCATAAGCTGATGGGGTTGGTGATGATGGGGAATCAAGATGGGTGTGTTCAGGTGGTTCAGGCTGCCGTGCACATTGGTATGGCCATAGAGCAGGAGGTTCGGATTCACAGTTTCTTGGAGAAGACTAAAAGTCTCCAGAGAAAGAAGAGTGCGGCTGCGGATGAAGATGGTCTGAGCAAGGAGAAGGAGATACTGAGGAAACGTGTTAATGGTTTGATTAGAAGGAAAAGACTGGTTGAGGTGCAAAAGCTACTGAAAAAAGAAGATATGAAGCCCTGGGGTCGGGATACACAGGCTAAGCTGGGAAGTCGGCTGATAGAACTATTAACAGAAACAGCTCATGTACAACCTCCACTTGACCAATTGGCAGATGGTCCACCTGATGTTAGACCTGCATTTAGGCACAGACTAAAGGCTGCGGCAAAAAGTCCAGGGCAGAAACTTGTGAAGAACTATGGAGTTATTGAATGTGATCCCCTAGTTCTTACCGGACTTGATAAAACTGCTAAACATATGTTGATTCCTTATGTGCCAATGTTGGTGCCTCCCAAAAGATGGAAAGGGTATGACAAGGGTGGACACTTGTTCCTACCTTCTTATGTCATGCGTACCCATGGATCTAGGAAGCAGGTAGATACAATGAGAAATATTCCTGGAAGACAGATGCAGAAAGTATTTGAGGCCCTCGATATGCTTGGAAGCACCAAATGGCGGATTAATAAAAAGGTTCTTAACGTGGTGGAGAGCATCTGGGCTAGAGGTGGCAACATTGCAGGCCTGGTTGATCGTGAAGATGTTCCTGTACCAGAGAAACCACCATCTGAGGATTTAACAGAAATTCAGGAATGGAGATGGAGTGCAAGAAAAGCAAAGAAGCTTAACCAAGAGAGGCATTCTCAACGATGTGATACTGAACTTAAGCTCTCTGTTGCGCGCAGAATGAAAGACGAGGAAGGCTTTTATTATCCCCACAATCTTGATTTCCGAGGCCGAGCATACCCAATGCATCCCCATTTGAATCATTTGAGTTCTGATCTATGTCGAGGAGTCCTTGAATTTGCTGAAGGGCGGCCATTGGGGAAGTCCGGATTGCGATGGCTGAAGATTCATTTAGCAAACTTGTATTCAGGTGGTGTTGAAAAGCTTTCATACGATGGGCGTATAGCATTCGTGGATAACCACATTGATGATATATTTGATTCAGCAACAAACCCTGTTAATGGAAATCATTGGTGGTTAACTGCTGAAGATCCTTTACAGTGCCTAGCTGCTTGTATCAATCTATCAGAAGCCTTAAATAGCCCATCACCACATACTGTCATTTCTCATTTACCCATCCATCAGGATGGTTCATGCAATGGCTTACAGCACTATGCAGCCTTGGGGAGAGATACTTTGGAAGCAGCTGCAGTCAACTTAGTTGCTGGAGAGAAACCTGCTGATGTGTATTCAGAAATAGCTGTGAGGGTACATGACATTATGAAGAGAGACAGCAATAAGGACCCAACTACCAGCCCAAATGCTTTATTGGCTAGAGTCTTAGTTGATCAGATTGATCGGAAATTGGTGAAACAGACTGTGATGACTTCAGTATATGGTGTTACTTACGTTGGGGCGCGTGAACAGATAAAAAGAAGATTAGAAGAGAAGGGTCTTATAACTGATGATAGACTGTTGTTCACCGCAGCTTGTTATGCTGCTAAAGTGACACTGGCTGCCCTTGGAGAGATTTTCCAAGCTGCACGTGGCATAATGAGCTGGCTTGGTGATTGTGCCAAGGTAATTGCTTCAGAAAATCAGCCTGTTCGTTGGACGACTCCTCTAGGTCTTCCTGTTGTGCAACCATACTGTAAAAGTGAACGACATCTTGTAAGTTTTGACATATTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

866

Amino Acids

98.09

Weight (kDa)

9.46

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	153 - 470	4.6e-75	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	593 - 860	3e-106	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24120 AT2G24120
fragaria_vesca	FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 FvH4_1g00590
malus_domestica	MD02G1004800.v1.1
prunus_persica	Prupe.7G266200_v2.0.a1 Prupe.7G266200_v2.0.a1
pyrus_communis	pycom02g00340 pycom15g13310
rosa_chinensis	RchiOBHm_Chr2g0085221
rosa_laevigata	RLG00000015668
rosa_multiflora	Rmu_sc0008510.1_g000002 Rmu_sc0011989.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155550
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG006900 Rh2BG007500 Rh2CG008300 Rh2DG008600
rosa_wichuraiana	Rw2G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2366
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	3 cut(s)	1108, 1327, 2152
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	2 cut(s)	280, 1249
AccB7I	CCANNNNNTGG	1 cut(s)	1263
AccII	CGCG	3 cut(s)	683, 1642, 2326
AccIII	TCCGGA	1 cut(s)	1793
AclWI	GGATC	3 cut(s)	1175, 1333, 1952
AcoI	YGGCCR	2 cut(s)	789, 1778
AcsI	RAATTY	5 cut(s)	262, 272, 293, 1545, 1763
AcuI	CTGAAG	7 cut(s)	94, 392, 1791, 1829, 1974, 2280, 2481
AcvI	CACGTG	1 cut(s)	2453
AfaI	GTAC	6 cut(s)	282, 440, 1053, 1318, 1512, 2178
AfiI	CCNNNNNNNGG	4 cut(s)	990, 1263, 1419, 1928
AflII	CTTAAG	1 cut(s)	1625
AflIII	ACRYGT	1 cut(s)	910
AgsI	TTSAA	6 cut(s)	145, 385, 1175, 1726, 1763, 1847
AhdI	GACNNNNNGTC	1 cut(s)	837
AjnI	CCWGG	5 cut(s)	276, 983, 1138, 1360, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
Alw21I	GWGCWC	1 cut(s)	780
Alw26I	GTCTC	4 cut(s)	315, 467, 845, 2190
Alw44I	GTGCAC	1 cut(s)	776
AlwI	GGATC	3 cut(s)	1175, 1333, 1952
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	1793
AoxI	GGCC	7 cut(s)	567, 603, 789, 1389, 1483, 1696, 1778
ApaLI	GTGCAC	1 cut(s)	776
ApoI	RAATTY	5 cut(s)	262, 272, 293, 1545, 1763
AseI	ATTAAT	1 cut(s)	1425
Asp700I	GAANNNNTTC	1 cut(s)	1503
Asp718I	GGTACC	1 cut(s)	280
AspLEI	GCGC	4 cut(s)	661, 1642, 1644, 2326
AspS9I	GGNCC	3 cut(s)	1082, 1390, 2209
AsuHPI	GGTGA	7 cut(s)	280, 290, 739, 2007, 2287, 2380, 2486
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	1082, 2209
BaeGI	GKGCMC	1 cut(s)	780
BalI	TGGCCA	1 cut(s)	791
BanI	GGYRCC	2 cut(s)	280, 1249
BarI	GAAGNNNNNNTAC	2 cut(s)	1947, 1979
BbrPI	CACGTG	1 cut(s)	2453
BbsI	GAAGAC	4 cut(s)	64, 836, 1372, 2528
Bbv12I	GWGCWC	1 cut(s)	780
BbvCI	CCTCAGC	1 cut(s)	449
BceAI	ACGGC	1 cut(s)	758
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BciT130I	CCWGG	5 cut(s)	278, 985, 1140, 1362, 1487
BciVI	GTATCC	1 cut(s)	988
BclI	TGATCA	1 cut(s)	2254
BcoDI	GTCTC	4 cut(s)	315, 467, 845, 2190
BfaI	CTAG	7 cut(s)	302, 1187, 1329, 1464, 1973, 2241, 2531
BfmI	CTRYAG	1 cut(s)	2115
BfrI	CTTAAG	1 cut(s)	1625
BfuAI	ACCTGC	3 cut(s)	1108, 1327, 2152
BfuI	GTATCC	1 cut(s)	988
BlpI	GCTNAGC	1 cut(s)	1005
Bme1390I	CCNGG	5 cut(s)	278, 985, 1140, 1362, 1487
Bme18I	GGWCC	2 cut(s)	1082, 2209
BmeRI	GACNNNNNGTC	1 cut(s)	837
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	1082, 1390, 2209
BmiI	GGNNCC	4 cut(s)	282, 546, 1251, 2211
BmrFI	CCNGG	5 cut(s)	278, 985, 1140, 1362, 1487
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	3 cut(s)	1362, 1464, 1723
BmuI	ACTGGG	1 cut(s)	197
BpiI	GAAGAC	4 cut(s)	64, 836, 1372, 2528
BplI	GAGNNNNNCTC	4 cut(s)	46, 78, 1588, 1620
BpmI	CTGGAG	5 cut(s)	73, 180, 297, 827, 2154
Bpu10I	CCTNAGC	3 cut(s)	45, 449, 612
Bpu1102I	GCTNAGC	1 cut(s)	1005
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	2453
BsaWI	WCCGGW	2 cut(s)	1196, 1793
BsaXI	ACNNNNNCTCC	2 cut(s)	1549, 1579
Bsc4I	CCNNNNNNNGG	4 cut(s)	990, 1263, 1419, 1928
Bse1I	ACTGG	3 cut(s)	203, 945, 2424
Bse3DI	GCAATG	3 cut(s)	606, 1476, 2071
BseAI	TCCGGA	1 cut(s)	1793
BseBI	CCWGG	5 cut(s)	278, 985, 1140, 1362, 1487
BseCI	ATCGAT	1 cut(s)	426
BseGI	GGATG	6 cut(s)	336, 505, 874, 1714, 2043, 2059
BseLI	CCNNNNNNNGG	4 cut(s)	990, 1263, 1419, 1928
BseMI	GCAATG	3 cut(s)	606, 1476, 2071
BseMII	CTCAG	8 cut(s)	59, 193, 440, 468, 587, 872, 893, 1521
BseNI	ACTGG	3 cut(s)	203, 945, 2424
BsePI	GCGCGC	1 cut(s)	1640
BseRI	GAGGAG	6 cut(s)	7, 27, 466, 469, 1767, 2517
BseSI	GKGCMC	1 cut(s)	780
BseYI	CCCAGC	1 cut(s)	1009
BsgI	GTGCAG	1 cut(s)	2433
Bsh1236I	CGCG	3 cut(s)	683, 1642, 2326
BshFI	GGCC	7 cut(s)	569, 605, 791, 1391, 1485, 1698, 1780
BshNI	GGYRCC	2 cut(s)	280, 1249
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	780
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	1197, 1794
BslFI	GGGAC	3 cut(s)	70, 307, 346
BslI	CCNNNNNNNGG	4 cut(s)	990, 1263, 1419, 1928
BsmAI	GTCTC	4 cut(s)	315, 467, 845, 2190
BsmFI	GGGAC	3 cut(s)	70, 307, 346
BsmI	GAATGC	2 cut(s)	1600, 1874
BsnI	GGCC	7 cut(s)	569, 605, 791, 1391, 1485, 1698, 1780
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp13I	TCCGGA	1 cut(s)	1793
Bsp1407I	TGTACA	1 cut(s)	1051
Bsp143I	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
Bsp1720I	GCTNAGC	1 cut(s)	1005
Bsp19I	CCATGG	2 cut(s)	350, 1321
BspANI	GGCC	7 cut(s)	569, 605, 791, 1391, 1485, 1698, 1780
BspCNI	CTCAG	8 cut(s)	58, 192, 441, 469, 588, 873, 894, 1522
BspDI	ATCGAT	1 cut(s)	426
BspEI	TCCGGA	1 cut(s)	1793
BspFNI	CGCG	3 cut(s)	683, 1642, 2326
BspLI	GGNNCC	4 cut(s)	282, 546, 1251, 2211
BspMAI	CTGCAG	1 cut(s)	2119
BspMI	ACCTGC	3 cut(s)	1108, 1327, 2152
BspPI	GGATC	3 cut(s)	1175, 1333, 1952
BspT107I	GGYRCC	2 cut(s)	280, 1249
BspTI	CTTAAG	1 cut(s)	1625
BsrDI	GCAATG	3 cut(s)	606, 1476, 2071
BsrGI	TGTACA	1 cut(s)	1051
BsrI	ACTGG	3 cut(s)	203, 945, 2424
BssHII	GCGCGC	1 cut(s)	1640
BssMI	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
BssT1I	CCWWGG	5 cut(s)	350, 1321, 2088, 2428, 2484
Bst2UI	CCWGG	5 cut(s)	278, 985, 1140, 1362, 1487
Bst4CI	ACNGT	6 cut(s)	818, 1968, 2026, 2287, 2382, 2558
Bst6I	CTCTTC	6 cut(s)	113, 143, 163, 848, 2186, 2346
BstAFI	CTTAAG	1 cut(s)	1625
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstAUI	TGTACA	1 cut(s)	1051
BstBAI	YACGTR	1 cut(s)	2453
BstC8I	GCNNGC	6 cut(s)	543, 554, 681, 1483, 1642, 2468
BstDSI	CCRYGG	3 cut(s)	350, 681, 1321
BstF5I	GGATG	6 cut(s)	336, 505, 874, 1714, 2043, 2059
BstFNI	CGCG	3 cut(s)	683, 1642, 2326
BstHHI	GCGC	4 cut(s)	661, 1642, 1644, 2326
BstKTI	GATC	7 cut(s)	1183, 1328, 1495, 1744, 1960, 2257, 2266
BstMAI	GTCTC	4 cut(s)	315, 467, 845, 2190
BstMBI	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 656, 1574, 2237, 2402, 2463
BstNI	CCWGG	5 cut(s)	278, 985, 1140, 1362, 1487
BstSCI	CCNGG	5 cut(s)	276, 983, 1138, 1360, 1485
BstSFI	CTRYAG	1 cut(s)	2115
BstSLI	GKGCMC	1 cut(s)	780
BstUI	CGCG	3 cut(s)	683, 1642, 2326
BstV2I	GAAGAC	4 cut(s)	64, 836, 1372, 2528
BstX2I	RGATCY	2 cut(s)	1325, 1957
BstXI	CCANNNNNNTGG	1 cut(s)	2054
BstYI	RGATCY	2 cut(s)	1325, 1957
Bsu15I	ATCGAT	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	7 cut(s)	569, 605, 791, 1391, 1485, 1698, 1780
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	3 cut(s)	350, 681, 1321
BtgZI	GCGATG	1 cut(s)	1816
BtsCI	GGATG	6 cut(s)	336, 505, 874, 1714, 2043, 2059
BtsIMutI	CAGTG	4 cut(s)	593, 695, 1973, 2417
BveI	ACCTGC	3 cut(s)	1108, 1327, 2152
Cac8I	GCNNGC	6 cut(s)	543, 554, 681, 1483, 1642, 2468
CfoI	GCGC	4 cut(s)	661, 1642, 1644, 2326
Cfr13I	GGNCC	3 cut(s)	1082, 1390, 2209
Cfr42I	CCGCGG	1 cut(s)	684
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	6 cut(s)	281, 439, 1052, 1317, 1511, 2177
CviAII	CATG	8 cut(s)	41, 268, 351, 1049, 1312, 1322, 2061, 2180
CviQI	GTAC	6 cut(s)	281, 439, 1052, 1317, 1511, 2177
DpnI	GATC	7 cut(s)	1182, 1327, 1494, 1743, 1959, 2256, 2265
DpnII	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
DrdI	GACNNNNNNGTC	1 cut(s)	245
DriI	GACNNNNNGTC	1 cut(s)	837
DseDI	GACNNNNNNGTC	1 cut(s)	245
EaeI	YGGCCR	2 cut(s)	789, 1778
Eam1104I	CTCTTC	6 cut(s)	113, 143, 163, 848, 2186, 2346
Eam1105I	GACNNNNNGTC	1 cut(s)	837
EarI	CTCTTC	6 cut(s)	113, 143, 163, 848, 2186, 2346
EciI	GGCGGA	2 cut(s)	485, 1435
Eco130I	CCWWGG	5 cut(s)	350, 1321, 2088, 2428, 2484
Eco147I	AGGCCT	2 cut(s)	569, 1485
Eco47I	GGWCC	2 cut(s)	1082, 2209
Eco57I	CTGAAG	7 cut(s)	94, 392, 1791, 1829, 1974, 2280, 2481
Eco72I	CACGTG	1 cut(s)	2453
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	2 cut(s)	1390, 2209
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	5 cut(s)	276, 983, 1138, 1360, 1485
EcoT14I	CCWWGG	5 cut(s)	350, 1321, 2088, 2428, 2484
EcoT22I	ATGCAT	2 cut(s)	711, 1716
ErhI	CCWWGG	5 cut(s)	350, 1321, 2088, 2428, 2484
FaeI	CATG	8 cut(s)	44, 271, 354, 1052, 1315, 1325, 2064, 2183
FaqI	GGGAC	3 cut(s)	70, 307, 346
FatI	CATG	8 cut(s)	40, 267, 350, 1048, 1311, 1321, 2060, 2179
FauI	CCCGC	1 cut(s)	688
FauNDI	CATATG	1 cut(s)	1221
FbaI	TGATCA	1 cut(s)	2254
FokI	GGATG	6 cut(s)	323, 512, 881, 1701, 2030, 2066
FspBI	CTAG	7 cut(s)	302, 1187, 1329, 1464, 1973, 2241, 2531
GlaI	GCGC	4 cut(s)	660, 1641, 1643, 2325
GsaI	CCCAGC	1 cut(s)	1013
GsuI	CTGGAG	5 cut(s)	73, 180, 297, 827, 2154
HaeIII	GGCC	7 cut(s)	569, 605, 791, 1391, 1485, 1698, 1780
HapII	CCGG	2 cut(s)	1197, 1794
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	4 cut(s)	661, 1642, 1644, 2326
Hin1II	CATG	8 cut(s)	44, 271, 354, 1052, 1315, 1325, 2064, 2183
Hin6I	GCGC	4 cut(s)	659, 1640, 1642, 2324
HinP1I	GCGC	4 cut(s)	659, 1640, 1642, 2324
HincII	GTYRAC	2 cut(s)	1947, 2122
HindII	GTYRAC	2 cut(s)	1947, 2122
HindIII	AAGCTT	2 cut(s)	1583, 1850
HpaI	GTTAAC	1 cut(s)	1947
HpaII	CCGG	2 cut(s)	1197, 1794
HphI	GGTGA	7 cut(s)	280, 290, 739, 2007, 2287, 2380, 2486
Hpy166II	GTNNAC	8 cut(s)	778, 1085, 1286, 1947, 2122, 2330, 2388, 2567
Hpy8I	GTNNAC	8 cut(s)	778, 1085, 1286, 1947, 2122, 2330, 2388, 2567
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	6 cut(s)	818, 1968, 2026, 2287, 2382, 2558
HpyCH4IV	ACGT	4 cut(s)	910, 1443, 2316, 2452
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 656, 1574, 2237, 2402, 2463
HpySE526I	ACGT	4 cut(s)	910, 1443, 2316, 2452
Hsp92II	CATG	8 cut(s)	44, 271, 354, 1052, 1315, 1325, 2064, 2183
HspAI	GCGC	4 cut(s)	659, 1640, 1642, 2324
Kpn2I	TCCGGA	1 cut(s)	1793
KpnI	GGTACC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	2254
KspAI	GTTAAC	1 cut(s)	1947
KspI	CCGCGG	1 cut(s)	684
Kzo9I	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
LmnI	GCTCC	2 cut(s)	550, 616
LweI	GCATC	3 cut(s)	1362, 1464, 1723
MaeI	CTAG	7 cut(s)	302, 1187, 1329, 1464, 1973, 2241, 2531
MaeII	ACGT	4 cut(s)	910, 1443, 2316, 2452
MaeIII	GTNAC	2 cut(s)	2308, 2413
MalI	GATC	7 cut(s)	1182, 1327, 1494, 1743, 1959, 2256, 2265
MboI	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
MfeI	CAATTG	1 cut(s)	1070
MflI	RGATCY	2 cut(s)	1325, 1957
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	791
MluCI	AATT	9 cut(s)	262, 272, 293, 407, 1070, 1545, 1763, 2270, 2490
MluNI	TGGCCA	1 cut(s)	791
MlyI	GAGTC	6 cut(s)	221, 326, 422, 1764, 2253, 2518
MmeI	TCCRAC	4 cut(s)	53, 147, 153, 2498
Mox20I	TGGCCA	1 cut(s)	791
Mph1103I	ATGCAT	2 cut(s)	711, 1716
MroI	TCCGGA	1 cut(s)	1793
MroXI	GAANNNNTTC	1 cut(s)	1503
MscI	TGGCCA	1 cut(s)	791
MslI	CAYNNNNRTG	3 cut(s)	785, 1893, 2052
Msp20I	TGGCCA	1 cut(s)	791
MspA1I	CMGCKG	2 cut(s)	683, 2114
MspCI	CTTAAG	1 cut(s)	1625
MspI	CCGG	2 cut(s)	1197, 1794
MspR9I	CCNGG	5 cut(s)	278, 985, 1140, 1362, 1487
MunI	CAATTG	1 cut(s)	1070
Mva1269I	GAATGC	2 cut(s)	1600, 1874
MvaI	CCWGG	5 cut(s)	278, 985, 1140, 1362, 1487
MvnI	CGCG	3 cut(s)	683, 1642, 2326
MwoI	GCNNNNNNNGC	6 cut(s)	11, 656, 1574, 2237, 2402, 2463
NcoI	CCATGG	2 cut(s)	350, 1321
NdeI	CATATG	1 cut(s)	1221
NdeII	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
NlaIII	CATG	8 cut(s)	44, 271, 354, 1052, 1315, 1325, 2064, 2183
NlaIV	GGNNCC	4 cut(s)	282, 546, 1251, 2211
NmeAIII	GCCGAG	1 cut(s)	1724
NmuCI	GTSAC	1 cut(s)	2413
NsiI	ATGCAT	2 cut(s)	711, 1716
PaeR7I	CTCGAG	1 cut(s)	257
PasI	CCCWGGG	1 cut(s)	984
PauI	GCGCGC	1 cut(s)	1640
PceI	AGGCCT	2 cut(s)	569, 1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	1600, 1874
PdmI	GAANNNNTTC	1 cut(s)	1503
PfeI	GAWTC	7 cut(s)	330, 739, 811, 1228, 1726, 1813, 1907
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	1263
PfoI	TCCNGGA	1 cut(s)	1360
PleI	GAGTC	6 cut(s)	221, 325, 421, 1763, 2252, 2518
PmaCI	CACGTG	1 cut(s)	2453
PmlI	CACGTG	1 cut(s)	2453
PpsI	GAGTC	6 cut(s)	221, 325, 421, 1763, 2252, 2518
Ppu21I	YACGTR	1 cut(s)	2453
PpuMI	RGGWCCY	1 cut(s)	2209
PshBI	ATTAAT	1 cut(s)	1425
PsiI	TTATAA	1 cut(s)	2366
Psp5II	RGGWCCY	1 cut(s)	2209
Psp6I	CCWGG	5 cut(s)	276, 983, 1138, 1360, 1485
PspCI	CACGTG	1 cut(s)	2453
PspFI	CCCAGC	1 cut(s)	1009
PspGI	CCWGG	5 cut(s)	276, 983, 1138, 1360, 1485
PspN4I	GGNNCC	4 cut(s)	282, 546, 1251, 2211
PspPI	GGNCC	3 cut(s)	1082, 1390, 2209
PspPPI	RGGWCCY	1 cut(s)	2209
PstI	CTGCAG	1 cut(s)	2119
PsuI	RGATCY	2 cut(s)	1325, 1957
PsyI	GACNNNGTC	1 cut(s)	230
PteI	GCGCGC	1 cut(s)	1640
PvuII	CAGCTG	1 cut(s)	2114
RsaI	GTAC	6 cut(s)	282, 440, 1053, 1318, 1512, 2178
RsaNI	GTAC	6 cut(s)	281, 439, 1052, 1317, 1511, 2177
RseI	CAYNNNNRTG	3 cut(s)	785, 1893, 2052
SacII	CCGCGG	1 cut(s)	684
Sau3AI	GATC	7 cut(s)	1180, 1325, 1492, 1741, 1957, 2254, 2263
Sau96I	GGNCC	3 cut(s)	1082, 1390, 2209
SchI	GAGTC	6 cut(s)	221, 326, 422, 1764, 2253, 2518
ScrFI	CCNGG	5 cut(s)	278, 985, 1140, 1362, 1487
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	3 cut(s)	1362, 1464, 1723
SfcI	CTRYAG	1 cut(s)	2115
Sfr274I	CTCGAG	1 cut(s)	257
Sfr303I	CCGCGG	1 cut(s)	684
SgrBI	CCGCGG	1 cut(s)	684
SinI	GGWCC	2 cut(s)	1082, 2209
SlaI	CTCGAG	1 cut(s)	257
SmiMI	CAYNNNNRTG	3 cut(s)	785, 1893, 2052
SmlI	CTYRAG	2 cut(s)	257, 1625
SmoI	CTYRAG	2 cut(s)	257, 1625
Sse9I	AATT	9 cut(s)	262, 272, 293, 407, 1070, 1545, 1763, 2270, 2490
SseBI	AGGCCT	2 cut(s)	569, 1485
SspI	AATATT	1 cut(s)	1357
SspMI	CTAG	7 cut(s)	302, 1187, 1329, 1464, 1973, 2241, 2531
StuI	AGGCCT	2 cut(s)	569, 1485
StyD4I	CCNGG	5 cut(s)	276, 983, 1138, 1360, 1485
StyI	CCWWGG	5 cut(s)	350, 1321, 2088, 2428, 2484
TaaI	ACNGT	6 cut(s)	818, 1968, 2026, 2287, 2382, 2558
TaiI	ACGT	4 cut(s)	913, 1446, 2319, 2455
TaqI	TCGA	6 cut(s)	249, 258, 416, 426, 1395, 1750
TasI	AATT	9 cut(s)	262, 272, 293, 407, 1070, 1545, 1763, 2270, 2490
TatI	WGTACW	2 cut(s)	438, 1051
TauI	GCSGC	4 cut(s)	664, 863, 1130, 1780
TfiI	GAWTC	7 cut(s)	330, 739, 811, 1228, 1726, 1813, 1907
TscAI	CASTG	4 cut(s)	600, 702, 1973, 2424
TseFI	GTSAC	1 cut(s)	2413
Tsp45I	GTSAC	1 cut(s)	2413
TspDTI	ATGAA	9 cut(s)	284, 325, 885, 992, 1664, 1805, 1845, 2049, 2204
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	4 cut(s)	600, 702, 1973, 2424
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	1263
Vha464I	CTTAAG	1 cut(s)	1625
VneI	GTGCAC	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	1082, 2209
VspI	ATTAAT	1 cut(s)	1425
XapI	RAATTY	5 cut(s)	262, 272, 293, 1545, 1763
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1076, 2450
XhoI	CTCGAG	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	1503
XspI	CTAG	7 cut(s)	302, 1187, 1329, 1464, 1973, 2241, 2531
Zsp2I	ATGCAT	2 cut(s)	711, 1716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.