DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24120 AT2G24120 |
| fragaria_vesca | FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 |
| malus_domestica | MD02G1004800.v1.1 |
| prunus_persica | Prupe.7G266200_v2.0.a1 Prupe.7G266200_v2.0.a1 |
| pyrus_communis | pycom02g00340 pycom15g13310 |
| rosa_chinensis | RchiOBHm_Chr2g0085221 |
| rosa_laevigata | RLG00000015668 |
| rosa_multiflora | Rmu_sc0008510.1_g000002 Rmu_sc0011989.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00155550 |
| rosa_rugosa | Rorug01G0458400 |
| rosa_samantha | Rh2AG006900 Rh2BG007500 Rh2CG008300 Rh2DG008600 |
| rosa_wichuraiana | Rw2G000660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 562 |
| Acc36I | ACCTGC | 4 cut(s) | 562, 697, 1054, 1317 |
| AccB1I | GGYRCC | 1 cut(s) | 976 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 990 |
| AccII | CGCG | 2 cut(s) | 277, 311 |
| AclWI | GGATC | 1 cut(s) | 1060 |
| AcoI | YGGCCR | 2 cut(s) | 140, 738 |
| AcsI | RAATTY | 1 cut(s) | 1244 |
| AcuI | CTGAAG | 3 cut(s) | 341, 1272, 1310 |
| AfaI | GTAC | 7 cut(s) | 8, 128, 332, 455, 509, 780, 1045 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 990, 1315, 1409 |
| AgsI | TTSAA | 6 cut(s) | 205, 355, 716, 1244, 1328, 1392 |
| AjnI | CCWGG | 1 cut(s) | 865 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 182, 214 |
| Alw26I | GTCTC | 4 cut(s) | 71, 416, 817, 1407 |
| AlwI | GGATC | 1 cut(s) | 1060 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1102 |
| Ama87I | CYCGRG | 2 cut(s) | 49, 56 |
| AoxI | GGCC | 6 cut(s) | 140, 339, 516, 738, 849, 1177 |
| ApeKI | GCWGC | 6 cut(s) | 61, 568, 577, 625, 719, 854 |
| ApoI | RAATTY | 1 cut(s) | 1244 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1109 |
| AspLEI | GCGC | 4 cut(s) | 313, 610, 646, 1350 |
| AspS9I | GGNCC | 1 cut(s) | 809 |
| AsuHPI | GGTGA | 1 cut(s) | 261 |
| AvaI | CYCGRG | 2 cut(s) | 49, 56 |
| AvaII | GGWCC | 1 cut(s) | 809 |
| BalI | TGGCCA | 1 cut(s) | 740 |
| BanI | GGYRCC | 1 cut(s) | 976 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 314, 346 |
| BbsI | GAAGAC | 1 cut(s) | 210 |
| BbvCI | CCTCAGC | 2 cut(s) | 239, 545 |
| BbvI | GCAGC | 6 cut(s) | 48, 580, 589, 612, 706, 866 |
| BccI | CCATC | 6 cut(s) | 9, 217, 634, 661, 730, 800 |
| BceAI | ACGGC | 1 cut(s) | 283 |
| BciT130I | CCWGG | 1 cut(s) | 867 |
| BclI | TGATCA | 1 cut(s) | 1363 |
| BcoDI | GTCTC | 4 cut(s) | 71, 416, 817, 1407 |
| BfoI | RGCGCY | 1 cut(s) | 647 |
| BfuAI | ACCTGC | 4 cut(s) | 562, 697, 1054, 1317 |
| BlpI | GCTNAGC | 2 cut(s) | 158, 181 |
| Bme1390I | CCNGG | 1 cut(s) | 867 |
| Bme18I | GGWCC | 1 cut(s) | 809 |
| BmeT110I | CYCGRG | 2 cut(s) | 49, 56 |
| BmgT120I | GGNCC | 1 cut(s) | 809 |
| BmiI | GGNNCC | 2 cut(s) | 495, 978 |
| BmrFI | CCNGG | 1 cut(s) | 867 |
| BmrI | ACTGGG | 1 cut(s) | 933 |
| BmsI | GCATC | 3 cut(s) | 1060, 1089, 1204 |
| BmuI | ACTGGG | 1 cut(s) | 933 |
| BpiI | GAAGAC | 1 cut(s) | 210 |
| Bpu10I | CCTNAGC | 2 cut(s) | 239, 545 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 158, 181 |
| BpuEI | CTTGAG | 1 cut(s) | 230 |
| BsaAI | YACGTR | 1 cut(s) | 511 |
| BsaBI | GATNNNNATC | 1 cut(s) | 284 |
| BsaI | GGTCTC | 1 cut(s) | 817 |
| BsaJI | CCNNGG | 3 cut(s) | 275, 299, 866 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 990, 1315, 1409 |
| Bse118I | RCCGGY | 2 cut(s) | 378, 826 |
| Bse1I | ACTGG | 2 cut(s) | 796, 928 |
| Bse3DI | GCAATG | 1 cut(s) | 1080 |
| Bse8I | GATNNNNATC | 1 cut(s) | 284 |
| BseBI | CCWGG | 1 cut(s) | 867 |
| BseDI | CCNNGG | 3 cut(s) | 275, 299, 866 |
| BseGI | GGATG | 3 cut(s) | 741, 1141, 1195 |
| BseJI | GATNNNNATC | 1 cut(s) | 284 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 990, 1315, 1409 |
| BseMI | GCAATG | 1 cut(s) | 1080 |
| BseMII | CTCAG | 4 cut(s) | 172, 195, 253, 536 |
| BseNI | ACTGG | 2 cut(s) | 796, 928 |
| BseRI | GAGGAG | 2 cut(s) | 464, 1358 |
| BseXI | GCAGC | 6 cut(s) | 48, 580, 589, 612, 706, 866 |
| BsgI | GTGCAG | 2 cut(s) | 596, 725 |
| Bsh1236I | CGCG | 2 cut(s) | 277, 311 |
| Bsh1285I | CGRYCG | 1 cut(s) | 379 |
| BshFI | GGCC | 6 cut(s) | 142, 341, 518, 740, 851, 1179 |
| BshNI | GGYRCC | 1 cut(s) | 976 |
| BsiEI | CGRYCG | 1 cut(s) | 379 |
| BsiHKCI | CYCGRG | 2 cut(s) | 49, 56 |
| BsiSI | CCGG | 4 cut(s) | 379, 400, 632, 827 |
| BsiWI | CGTACG | 2 cut(s) | 6, 507 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 990, 1315, 1409 |
| BsmAI | GTCTC | 4 cut(s) | 71, 416, 817, 1407 |
| BsmBI | CGTCTC | 2 cut(s) | 71, 416 |
| BsnI | GGCC | 6 cut(s) | 142, 341, 518, 740, 851, 1179 |
| Bso31I | GGTCTC | 1 cut(s) | 817 |
| BsoBI | CYCGRG | 2 cut(s) | 49, 56 |
| Bsp1407I | TGTACA | 2 cut(s) | 330, 778 |
| Bsp143I | GATC | 3 cut(s) | 1052, 1222, 1363 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 158, 181 |
| BspANI | GGCC | 6 cut(s) | 142, 341, 518, 740, 851, 1179 |
| BspCNI | CTCAG | 4 cut(s) | 171, 194, 252, 537 |
| BspFNI | CGCG | 2 cut(s) | 277, 311 |
| BspLI | GGNNCC | 2 cut(s) | 495, 978 |
| BspMI | ACCTGC | 4 cut(s) | 562, 697, 1054, 1317 |
| BspPI | GGATC | 1 cut(s) | 1060 |
| BspT107I | GGYRCC | 1 cut(s) | 976 |
| BspTNI | GGTCTC | 1 cut(s) | 817 |
| BsrDI | GCAATG | 1 cut(s) | 1080 |
| BsrFI | RCCGGY | 2 cut(s) | 378, 826 |
| BsrGI | TGTACA | 2 cut(s) | 330, 778 |
| BsrI | ACTGG | 2 cut(s) | 796, 928 |
| BssAI | RCCGGY | 2 cut(s) | 378, 826 |
| BssECI | CCNNGG | 3 cut(s) | 275, 299, 866 |
| BssMI | GATC | 3 cut(s) | 1052, 1222, 1363 |
| Bst2UI | CCWGG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 2 cut(s) | 131, 216 |
| Bst6I | CTCTTC | 2 cut(s) | 109, 203 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 574 |
| BstAUI | TGTACA | 2 cut(s) | 330, 778 |
| BstBAI | YACGTR | 1 cut(s) | 511 |
| BstC8I | GCNNGC | 3 cut(s) | 492, 1123, 1314 |
| BstDEI | CTNAG | 4 cut(s) | 158, 181, 239, 545 |
| BstDSI | CCRYGG | 2 cut(s) | 275, 299 |
| BstF5I | GGATG | 3 cut(s) | 741, 1141, 1195 |
| BstFNI | CGCG | 2 cut(s) | 277, 311 |
| BstH2I | RGCGCY | 1 cut(s) | 647 |
| BstHHI | GCGC | 4 cut(s) | 313, 610, 646, 1350 |
| BstKTI | GATC | 3 cut(s) | 1055, 1225, 1366 |
| BstMAI | GTCTC | 4 cut(s) | 71, 416, 817, 1407 |
| BstMBI | GATC | 3 cut(s) | 1052, 1222, 1363 |
| BstMCI | CGRYCG | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 61, 92, 154, 574, 577, 605 |
| BstNI | CCWGG | 1 cut(s) | 867 |
| BstNSI | RCATGY | 1 cut(s) | 1316 |
| BstSCI | CCNGG | 1 cut(s) | 865 |
| BstUI | CGCG | 2 cut(s) | 277, 311 |
| BstV1I | GCAGC | 6 cut(s) | 48, 580, 589, 612, 706, 866 |
| BstV2I | GAAGAC | 1 cut(s) | 210 |
| BsuRI | GGCC | 6 cut(s) | 142, 341, 518, 740, 851, 1179 |
| BtgI | CCRYGG | 2 cut(s) | 275, 299 |
| BtsCI | GGATG | 3 cut(s) | 741, 1141, 1195 |
| BtsIMutI | CAGTG | 1 cut(s) | 212 |
| BveI | ACCTGC | 4 cut(s) | 562, 697, 1054, 1317 |
| Cac8I | GCNNGC | 3 cut(s) | 492, 1123, 1314 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1102 |
| CfoI | GCGC | 4 cut(s) | 313, 610, 646, 1350 |
| Cfr10I | RCCGGY | 2 cut(s) | 378, 826 |
| Cfr13I | GGNCC | 1 cut(s) | 809 |
| Cfr42I | CCGCGG | 1 cut(s) | 278 |
| CseI | GACGC | 1 cut(s) | 53 |
| Csp6I | GTAC | 7 cut(s) | 7, 127, 331, 454, 508, 779, 1044 |
| CviAII | CATG | 4 cut(s) | 138, 1039, 1049, 1313 |
| CviQI | GTAC | 7 cut(s) | 7, 127, 331, 454, 508, 779, 1044 |
| DdeI | CTNAG | 4 cut(s) | 158, 181, 239, 545 |
| DpnI | GATC | 3 cut(s) | 1054, 1224, 1365 |
| DpnII | GATC | 3 cut(s) | 1052, 1222, 1363 |
| DraI | TTTAAA | 1 cut(s) | 1206 |
| EaeI | YGGCCR | 2 cut(s) | 140, 738 |
| Eam1104I | CTCTTC | 2 cut(s) | 109, 203 |
| EarI | CTCTTC | 2 cut(s) | 109, 203 |
| EciI | GGCGGA | 2 cut(s) | 397, 434 |
| Eco147I | AGGCCT | 1 cut(s) | 518 |
| Eco31I | GGTCTC | 1 cut(s) | 817 |
| Eco47I | GGWCC | 1 cut(s) | 809 |
| Eco57I | CTGAAG | 3 cut(s) | 341, 1272, 1310 |
| Eco88I | CYCGRG | 2 cut(s) | 49, 56 |
| EcoRII | CCWGG | 1 cut(s) | 865 |
| EcoT22I | ATGCAT | 2 cut(s) | 660, 1197 |
| Esp3I | CGTCTC | 2 cut(s) | 71, 416 |
| FaeI | CATG | 4 cut(s) | 141, 1042, 1052, 1316 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 158, 190 |
| FatI | CATG | 4 cut(s) | 137, 1038, 1048, 1312 |
| FauI | CCCGC | 2 cut(s) | 303, 1309 |
| FauNDI | CATATG | 1 cut(s) | 948 |
| FbaI | TGATCA | 1 cut(s) | 1363 |
| FokI | GGATG | 3 cut(s) | 748, 1148, 1182 |
| GlaI | GCGC | 4 cut(s) | 312, 609, 645, 1349 |
| HaeII | RGCGCY | 1 cut(s) | 647 |
| HaeIII | GGCC | 6 cut(s) | 142, 341, 518, 740, 851, 1179 |
| HapII | CCGG | 4 cut(s) | 379, 400, 632, 827 |
| HgaI | GACGC | 1 cut(s) | 53 |
| HhaI | GCGC | 4 cut(s) | 313, 610, 646, 1350 |
| Hin1II | CATG | 4 cut(s) | 141, 1042, 1052, 1316 |
| Hin6I | GCGC | 4 cut(s) | 311, 608, 644, 1348 |
| HinP1I | GCGC | 4 cut(s) | 311, 608, 644, 1348 |
| HinfI | GANTC | 9 cut(s) | 266, 362, 688, 760, 908, 955, 1236, 1294, 1388 |
| HpaII | CCGG | 4 cut(s) | 379, 400, 632, 827 |
| HphI | GGTGA | 1 cut(s) | 261 |
| Hpy166II | GTNNAC | 2 cut(s) | 812, 1280 |
| Hpy188I | TCNGA | 5 cut(s) | 14, 259, 321, 498, 1222 |
| Hpy188III | TCNNGA | 5 cut(s) | 49, 692, 733, 1089, 1166 |
| Hpy8I | GTNNAC | 2 cut(s) | 812, 1280 |
| HpyAV | CCTTC | 9 cut(s) | 109, 264, 316, 361, 508, 1038, 1126, 1136, 1247 |
| HpyCH4III | ACNGT | 2 cut(s) | 131, 216 |
| HpyCH4IV | ACGT | 4 cut(s) | 9, 125, 510, 1282 |
| HpyCH4V | TGCA | 7 cut(s) | 577, 658, 706, 1073, 1125, 1195, 1312 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 61, 92, 154, 574, 577, 605 |
| HpyF3I | CTNAG | 4 cut(s) | 158, 181, 239, 545 |
| HpySE526I | ACGT | 4 cut(s) | 9, 125, 510, 1282 |
| Hsp92II | CATG | 4 cut(s) | 141, 1042, 1052, 1316 |
| HspAI | GCGC | 4 cut(s) | 311, 608, 644, 1348 |
| Ksp22I | TGATCA | 1 cut(s) | 1363 |
| KspI | CCGCGG | 1 cut(s) | 278 |
| Kzo9I | GATC | 3 cut(s) | 1052, 1222, 1363 |
| LmnI | GCTCC | 3 cut(s) | 499, 565, 1345 |
| Lsp1109I | GCAGC | 6 cut(s) | 48, 580, 589, 612, 706, 866 |
| LweI | GCATC | 3 cut(s) | 1060, 1089, 1204 |
| MaeII | ACGT | 4 cut(s) | 9, 125, 510, 1282 |
| MaeIII | GTNAC | 1 cut(s) | 1013 |
| MalI | GATC | 3 cut(s) | 1054, 1224, 1365 |
| MboI | GATC | 3 cut(s) | 1052, 1222, 1363 |
| MlsI | TGGCCA | 1 cut(s) | 740 |
| MluCI | AATT | 5 cut(s) | 356, 391, 886, 915, 1244 |
| MluNI | TGGCCA | 1 cut(s) | 740 |
| MlyI | GAGTC | 2 cut(s) | 260, 371 |
| MmeI | TCCRAC | 2 cut(s) | 213, 282 |
| Mox20I | TGGCCA | 1 cut(s) | 740 |
| Mph1103I | ATGCAT | 2 cut(s) | 660, 1197 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1109 |
| MscI | TGGCCA | 1 cut(s) | 740 |
| MseI | TTAA | 4 cut(s) | 27, 792, 846, 1205 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1317, 1374 |
| Msp20I | TGGCCA | 1 cut(s) | 740 |
| MspA1I | CMGCKG | 2 cut(s) | 277, 544 |
| MspI | CCGG | 4 cut(s) | 379, 400, 632, 827 |
| MspR9I | CCNGG | 1 cut(s) | 867 |
| MvaI | CCWGG | 1 cut(s) | 867 |
| MvnI | CGCG | 2 cut(s) | 277, 311 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 61, 92, 154, 574, 577, 605 |
| NdeI | CATATG | 1 cut(s) | 948 |
| NdeII | GATC | 3 cut(s) | 1052, 1222, 1363 |
| NlaIII | CATG | 4 cut(s) | 141, 1042, 1052, 1316 |
| NlaIV | GGNNCC | 2 cut(s) | 495, 978 |
| NmeAIII | GCCGAG | 1 cut(s) | 1205 |
| NmuCI | GTSAC | 1 cut(s) | 1013 |
| NsiI | ATGCAT | 2 cut(s) | 660, 1197 |
| NspI | RCATGY | 1 cut(s) | 1316 |
| PaeI | GCATGC | 1 cut(s) | 1316 |
| PaeR7I | CTCGAG | 2 cut(s) | 49, 56 |
| PaqCI | CACCTGC | 1 cut(s) | 562 |
| PceI | AGGCCT | 1 cut(s) | 518 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1109 |
| PfeI | GAWTC | 7 cut(s) | 688, 760, 908, 955, 1236, 1294, 1388 |
| Pfl23II | CGTACG | 2 cut(s) | 6, 507 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 990 |
| PleI | GAGTC | 2 cut(s) | 260, 370 |
| PpsI | GAGTC | 2 cut(s) | 260, 370 |
| Ppu21I | YACGTR | 1 cut(s) | 511 |
| Psp6I | CCWGG | 1 cut(s) | 865 |
| PspGI | CCWGG | 1 cut(s) | 865 |
| PspLI | CGTACG | 2 cut(s) | 6, 507 |
| PspN4I | GGNNCC | 2 cut(s) | 495, 978 |
| PspPI | GGNCC | 1 cut(s) | 809 |
| PspXI | VCTCGAGB | 1 cut(s) | 56 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 380, 412 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1102 |
| RsaI | GTAC | 7 cut(s) | 8, 128, 332, 455, 509, 780, 1045 |
| RsaNI | GTAC | 7 cut(s) | 7, 127, 331, 454, 508, 779, 1044 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1317, 1374 |
| SacII | CCGCGG | 1 cut(s) | 278 |
| SaqAI | TTAA | 4 cut(s) | 27, 792, 846, 1205 |
| Sau3AI | GATC | 3 cut(s) | 1052, 1222, 1363 |
| Sau96I | GGNCC | 1 cut(s) | 809 |
| SchI | GAGTC | 2 cut(s) | 260, 371 |
| ScrFI | CCNGG | 1 cut(s) | 867 |
| SfaNI | GCATC | 3 cut(s) | 1060, 1089, 1204 |
| Sfr274I | CTCGAG | 2 cut(s) | 49, 56 |
| Sfr303I | CCGCGG | 1 cut(s) | 278 |
| SgrBI | CCGCGG | 1 cut(s) | 278 |
| SinI | GGWCC | 1 cut(s) | 809 |
| SlaI | CTCGAG | 2 cut(s) | 49, 56 |
| SmiI | ATTTAAAT | 1 cut(s) | 1206 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1317, 1374 |
| SmlI | CTYRAG | 3 cut(s) | 49, 56, 245 |
| SmoI | CTYRAG | 3 cut(s) | 49, 56, 245 |
| SphI | GCATGC | 1 cut(s) | 1316 |
| Sse9I | AATT | 5 cut(s) | 356, 391, 886, 915, 1244 |
| SseBI | AGGCCT | 1 cut(s) | 518 |
| SspI | AATATT | 1 cut(s) | 1084 |
| StuI | AGGCCT | 1 cut(s) | 518 |
| StyD4I | CCNGG | 1 cut(s) | 865 |
| SwaI | ATTTAAAT | 1 cut(s) | 1206 |
| TaaI | ACNGT | 2 cut(s) | 131, 216 |
| TaiI | ACGT | 4 cut(s) | 12, 128, 513, 1285 |
| TaqI | TCGA | 8 cut(s) | 50, 57, 152, 365, 375, 1113, 1174, 1231 |
| TasI | AATT | 5 cut(s) | 356, 391, 886, 915, 1244 |
| TatI | WGTACW | 3 cut(s) | 330, 453, 778 |
| TauI | GCSGC | 9 cut(s) | 277, 311, 406, 409, 544, 602, 613, 631, 854 |
| TfiI | GAWTC | 7 cut(s) | 688, 760, 908, 955, 1236, 1294, 1388 |
| Tru1I | TTAA | 4 cut(s) | 27, 792, 846, 1205 |
| Tru9I | TTAA | 4 cut(s) | 27, 792, 846, 1205 |
| TscAI | CASTG | 1 cut(s) | 219 |
| TseFI | GTSAC | 1 cut(s) | 1013 |
| TseI | GCWGC | 6 cut(s) | 61, 568, 577, 625, 719, 854 |
| Tsp45I | GTSAC | 1 cut(s) | 1013 |
| TspDTI | ATGAA | 4 cut(s) | 28, 716, 1145, 1286 |
| TspGWI | ACGGA | 2 cut(s) | 440, 495 |
| TspRI | CASTG | 1 cut(s) | 219 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 990 |
| VpaK11BI | GGWCC | 1 cut(s) | 809 |
| XapI | RAATTY | 1 cut(s) | 1244 |
| XceI | RCATGY | 1 cut(s) | 1316 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 803 |
| XhoI | CTCGAG | 2 cut(s) | 49, 56 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1109 |
| Zsp2I | ATGCAT | 2 cut(s) | 660, 1197 |