pycom15g13310

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
9102176 .. 9107389
5214 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g13310.8

Sequence Viewer

Length: 1419 bp
ATGTCGTACGTCAGATGGTTAGTGTTTAAGCGAGGTTTCATCTTCTTCTCGAGGCTCGAGCTGCGTCTCGCTCTCTCAAAAATGGCTTCCACAGCCTCCTTCTCTTCTTGCCCACAAGCTCAAACGTACAGTTCCACATGGCCGAAGCTGTCGAAGCTCAGCCACAAGTTCCTCTTTAGCTCAGCCTCCAACCGCCTCTTCTTCAACCCATCACTGTCTTCCTCCACTCCTTTCCCCCTCAGCCTCAAGCCCCCTTCCGACCCCGACTCACCGCCGCGGATTTTTATCCAAGACCCGCCGTGGATTGCCGCGCTGTTTCTGAAGGGAATGTACAAAAAGGCCAACCAAGAGTTGAAATTGGAGTCGAAGGAAATCGACCGGCGGAAGTATAATTTGTTCCGGCGGCGGCAGATAAAGGCGGAGACGGAGGCGTGGGAGAGAATGGTGGAGGAGTACAGGGATTTGGAACGAGTAATGTGGGAGAAGAAGCTGGCTCCGAGCTTTCCGTACGTGAAGGCCTTGTTTTTGGGGTGGTTTGAGCCGCTGAGGGAGGCGATTGCGAGGGAGCAGCAGGTGCAGCAAACGAAGAAGCACAAAGCGGCGTTTGCGCCGCACATTGACTTGCTGCCGCCGGATAAGATGGCGCTGATTGTTATGCATAAGATGATGGGTTTGGTTATGGTGGGGAATCAAGACGGGTGTGTGCAGGTTGTTCAAGCTGCTGTTCATATCGGGATGGCCATAGAGCAGGAGGTTAGGATTCACAAAACAGCTTATGTACAACCTCCACTTAACCAGTTGGTAGATGGTCCACCTGATGTGAGACCGGCATTTAGGCACAGATTTAAGGCCGCAGCAAAAAGTCCAGGGCAGAAACTTGTGAAGAATTATGGAGTTATAGAATGTGATTCCCTAATTCTTACTGGGCTTGATAAAACTGCTAAACATATGTTGATTCCTTATGTGCCAATGTTGGTGCCTCCCAGAAAGTGGAAAGGGTATGACAGGGGTGGTCACTTGTTCCTACCTTCTTATGTCATGCGTACTCATGGATCAAGGAAGCAGGTAGATGCAATGAGGAATATTTCTGGAAAGCAGATGCTGAATGTATTCGAGGTTGCTTGCAAGATGAAGGATGAGGAAGGCTTTTATTATCCTCACAATCTTGATTTTCGAGGCCGAGCTTACCCAATGCATCCACATTTAAATCATTTGAGTTCTGATCTCTGTCGAGGAATCCTTGAATTTGCTGAAGGACGACCATTAGGGAAGTCTGGTTTACGTTGGCTGAAGATTCATTTATCAAACCTGCATGCGGGTGGTGTTGAAAAGGTTTCGTATGAGGAGCGCAAAGGATTTGTTGATCATCACATTGATGATATAGTTGATTCAACAACAAACCCTGTAAATGGAGACTGA

Protein Analysis

473

Amino Acids

54.15

Weight (kDa)

9.66

Isoelectric Point (pI)

54.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
Acc36I ACCTGC 4 cut(s) 562, 697, 1054, 1317
AccB1I GGYRCC 1 cut(s) 976
AccB7I CCANNNNNTGG 1 cut(s) 990
AccII CGCG 2 cut(s) 277, 311
AclWI GGATC 1 cut(s) 1060
AcoI YGGCCR 2 cut(s) 140, 738
AcsI RAATTY 1 cut(s) 1244
AcuI CTGAAG 3 cut(s) 341, 1272, 1310
AfaI GTAC 7 cut(s) 8, 128, 332, 455, 509, 780, 1045
AfiI CCNNNNNNNGG 3 cut(s) 990, 1315, 1409
AgsI TTSAA 6 cut(s) 205, 355, 716, 1244, 1328, 1392
AjnI CCWGG 1 cut(s) 865
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
Alw26I GTCTC 4 cut(s) 71, 416, 817, 1407
AlwI GGATC 1 cut(s) 1060
AlwNI CAGNNNCTG 1 cut(s) 1102
Ama87I CYCGRG 2 cut(s) 49, 56
AoxI GGCC 6 cut(s) 140, 339, 516, 738, 849, 1177
ApeKI GCWGC 6 cut(s) 61, 568, 577, 625, 719, 854
ApoI RAATTY 1 cut(s) 1244
Asp700I GAANNNNTTC 1 cut(s) 1109
AspLEI GCGC 4 cut(s) 313, 610, 646, 1350
AspS9I GGNCC 1 cut(s) 809
AsuHPI GGTGA 1 cut(s) 261
AvaI CYCGRG 2 cut(s) 49, 56
AvaII GGWCC 1 cut(s) 809
BalI TGGCCA 1 cut(s) 740
BanI GGYRCC 1 cut(s) 976
BarI GAAGNNNNNNTAC 2 cut(s) 314, 346
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 2 cut(s) 239, 545
BbvI GCAGC 6 cut(s) 48, 580, 589, 612, 706, 866
BccI CCATC 6 cut(s) 9, 217, 634, 661, 730, 800
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 867
BclI TGATCA 1 cut(s) 1363
BcoDI GTCTC 4 cut(s) 71, 416, 817, 1407
BfoI RGCGCY 1 cut(s) 647
BfuAI ACCTGC 4 cut(s) 562, 697, 1054, 1317
BlpI GCTNAGC 2 cut(s) 158, 181
Bme1390I CCNGG 1 cut(s) 867
Bme18I GGWCC 1 cut(s) 809
BmeT110I CYCGRG 2 cut(s) 49, 56
BmgT120I GGNCC 1 cut(s) 809
BmiI GGNNCC 2 cut(s) 495, 978
BmrFI CCNGG 1 cut(s) 867
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 3 cut(s) 1060, 1089, 1204
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 239, 545
Bpu1102I GCTNAGC 2 cut(s) 158, 181
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 275, 299, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 990, 1315, 1409
Bse118I RCCGGY 2 cut(s) 378, 826
Bse1I ACTGG 2 cut(s) 796, 928
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 867
BseDI CCNNGG 3 cut(s) 275, 299, 866
BseGI GGATG 3 cut(s) 741, 1141, 1195
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 990, 1315, 1409
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 4 cut(s) 172, 195, 253, 536
BseNI ACTGG 2 cut(s) 796, 928
BseRI GAGGAG 2 cut(s) 464, 1358
BseXI GCAGC 6 cut(s) 48, 580, 589, 612, 706, 866
BsgI GTGCAG 2 cut(s) 596, 725
Bsh1236I CGCG 2 cut(s) 277, 311
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 6 cut(s) 142, 341, 518, 740, 851, 1179
BshNI GGYRCC 1 cut(s) 976
BsiEI CGRYCG 1 cut(s) 379
BsiHKCI CYCGRG 2 cut(s) 49, 56
BsiSI CCGG 4 cut(s) 379, 400, 632, 827
BsiWI CGTACG 2 cut(s) 6, 507
BslI CCNNNNNNNGG 3 cut(s) 990, 1315, 1409
BsmAI GTCTC 4 cut(s) 71, 416, 817, 1407
BsmBI CGTCTC 2 cut(s) 71, 416
BsnI GGCC 6 cut(s) 142, 341, 518, 740, 851, 1179
Bso31I GGTCTC 1 cut(s) 817
BsoBI CYCGRG 2 cut(s) 49, 56
Bsp1407I TGTACA 2 cut(s) 330, 778
Bsp143I GATC 3 cut(s) 1052, 1222, 1363
Bsp1720I GCTNAGC 2 cut(s) 158, 181
BspANI GGCC 6 cut(s) 142, 341, 518, 740, 851, 1179
BspCNI CTCAG 4 cut(s) 171, 194, 252, 537
BspFNI CGCG 2 cut(s) 277, 311
BspLI GGNNCC 2 cut(s) 495, 978
BspMI ACCTGC 4 cut(s) 562, 697, 1054, 1317
BspPI GGATC 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 976
BspTNI GGTCTC 1 cut(s) 817
BsrDI GCAATG 1 cut(s) 1080
BsrFI RCCGGY 2 cut(s) 378, 826
BsrGI TGTACA 2 cut(s) 330, 778
BsrI ACTGG 2 cut(s) 796, 928
BssAI RCCGGY 2 cut(s) 378, 826
BssECI CCNNGG 3 cut(s) 275, 299, 866
BssMI GATC 3 cut(s) 1052, 1222, 1363
Bst2UI CCWGG 1 cut(s) 867
Bst4CI ACNGT 2 cut(s) 131, 216
Bst6I CTCTTC 2 cut(s) 109, 203
BstAPI GCANNNNNTGC 1 cut(s) 574
BstAUI TGTACA 2 cut(s) 330, 778
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 3 cut(s) 492, 1123, 1314
BstDEI CTNAG 4 cut(s) 158, 181, 239, 545
BstDSI CCRYGG 2 cut(s) 275, 299
BstF5I GGATG 3 cut(s) 741, 1141, 1195
BstFNI CGCG 2 cut(s) 277, 311
BstH2I RGCGCY 1 cut(s) 647
BstHHI GCGC 4 cut(s) 313, 610, 646, 1350
BstKTI GATC 3 cut(s) 1055, 1225, 1366
BstMAI GTCTC 4 cut(s) 71, 416, 817, 1407
BstMBI GATC 3 cut(s) 1052, 1222, 1363
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 6 cut(s) 61, 92, 154, 574, 577, 605
BstNI CCWGG 1 cut(s) 867
BstNSI RCATGY 1 cut(s) 1316
BstSCI CCNGG 1 cut(s) 865
BstUI CGCG 2 cut(s) 277, 311
BstV1I GCAGC 6 cut(s) 48, 580, 589, 612, 706, 866
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 6 cut(s) 142, 341, 518, 740, 851, 1179
BtgI CCRYGG 2 cut(s) 275, 299
BtsCI GGATG 3 cut(s) 741, 1141, 1195
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 4 cut(s) 562, 697, 1054, 1317
Cac8I GCNNGC 3 cut(s) 492, 1123, 1314
CaiI CAGNNNCTG 1 cut(s) 1102
CfoI GCGC 4 cut(s) 313, 610, 646, 1350
Cfr10I RCCGGY 2 cut(s) 378, 826
Cfr13I GGNCC 1 cut(s) 809
Cfr42I CCGCGG 1 cut(s) 278
CseI GACGC 1 cut(s) 53
Csp6I GTAC 7 cut(s) 7, 127, 331, 454, 508, 779, 1044
CviAII CATG 4 cut(s) 138, 1039, 1049, 1313
CviQI GTAC 7 cut(s) 7, 127, 331, 454, 508, 779, 1044
DdeI CTNAG 4 cut(s) 158, 181, 239, 545
DpnI GATC 3 cut(s) 1054, 1224, 1365
DpnII GATC 3 cut(s) 1052, 1222, 1363
DraI TTTAAA 1 cut(s) 1206
EaeI YGGCCR 2 cut(s) 140, 738
Eam1104I CTCTTC 2 cut(s) 109, 203
EarI CTCTTC 2 cut(s) 109, 203
EciI GGCGGA 2 cut(s) 397, 434
Eco147I AGGCCT 1 cut(s) 518
Eco31I GGTCTC 1 cut(s) 817
Eco47I GGWCC 1 cut(s) 809
Eco57I CTGAAG 3 cut(s) 341, 1272, 1310
Eco88I CYCGRG 2 cut(s) 49, 56
EcoRII CCWGG 1 cut(s) 865
EcoT22I ATGCAT 2 cut(s) 660, 1197
Esp3I CGTCTC 2 cut(s) 71, 416
FaeI CATG 4 cut(s) 141, 1042, 1052, 1316
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 4 cut(s) 137, 1038, 1048, 1312
FauI CCCGC 2 cut(s) 303, 1309
FauNDI CATATG 1 cut(s) 948
FbaI TGATCA 1 cut(s) 1363
FokI GGATG 3 cut(s) 748, 1148, 1182
GlaI GCGC 4 cut(s) 312, 609, 645, 1349
HaeII RGCGCY 1 cut(s) 647
HaeIII GGCC 6 cut(s) 142, 341, 518, 740, 851, 1179
HapII CCGG 4 cut(s) 379, 400, 632, 827
HgaI GACGC 1 cut(s) 53
HhaI GCGC 4 cut(s) 313, 610, 646, 1350
Hin1II CATG 4 cut(s) 141, 1042, 1052, 1316
Hin6I GCGC 4 cut(s) 311, 608, 644, 1348
HinP1I GCGC 4 cut(s) 311, 608, 644, 1348
HinfI GANTC 9 cut(s) 266, 362, 688, 760, 908, 955, 1236, 1294, 1388
HpaII CCGG 4 cut(s) 379, 400, 632, 827
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 812, 1280
Hpy188I TCNGA 5 cut(s) 14, 259, 321, 498, 1222
Hpy188III TCNNGA 5 cut(s) 49, 692, 733, 1089, 1166
Hpy8I GTNNAC 2 cut(s) 812, 1280
HpyAV CCTTC 9 cut(s) 109, 264, 316, 361, 508, 1038, 1126, 1136, 1247
HpyCH4III ACNGT 2 cut(s) 131, 216
HpyCH4IV ACGT 4 cut(s) 9, 125, 510, 1282
HpyCH4V TGCA 7 cut(s) 577, 658, 706, 1073, 1125, 1195, 1312
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 92, 154, 574, 577, 605
HpyF3I CTNAG 4 cut(s) 158, 181, 239, 545
HpySE526I ACGT 4 cut(s) 9, 125, 510, 1282
Hsp92II CATG 4 cut(s) 141, 1042, 1052, 1316
HspAI GCGC 4 cut(s) 311, 608, 644, 1348
Ksp22I TGATCA 1 cut(s) 1363
KspI CCGCGG 1 cut(s) 278
Kzo9I GATC 3 cut(s) 1052, 1222, 1363
LmnI GCTCC 3 cut(s) 499, 565, 1345
Lsp1109I GCAGC 6 cut(s) 48, 580, 589, 612, 706, 866
LweI GCATC 3 cut(s) 1060, 1089, 1204
MaeII ACGT 4 cut(s) 9, 125, 510, 1282
MaeIII GTNAC 1 cut(s) 1013
MalI GATC 3 cut(s) 1054, 1224, 1365
MboI GATC 3 cut(s) 1052, 1222, 1363
MlsI TGGCCA 1 cut(s) 740
MluCI AATT 5 cut(s) 356, 391, 886, 915, 1244
MluNI TGGCCA 1 cut(s) 740
MlyI GAGTC 2 cut(s) 260, 371
MmeI TCCRAC 2 cut(s) 213, 282
Mox20I TGGCCA 1 cut(s) 740
Mph1103I ATGCAT 2 cut(s) 660, 1197
MroXI GAANNNNTTC 1 cut(s) 1109
MscI TGGCCA 1 cut(s) 740
MseI TTAA 4 cut(s) 27, 792, 846, 1205
MslI CAYNNNNRTG 2 cut(s) 1317, 1374
Msp20I TGGCCA 1 cut(s) 740
MspA1I CMGCKG 2 cut(s) 277, 544
MspI CCGG 4 cut(s) 379, 400, 632, 827
MspR9I CCNGG 1 cut(s) 867
MvaI CCWGG 1 cut(s) 867
MvnI CGCG 2 cut(s) 277, 311
MwoI GCNNNNNNNGC 6 cut(s) 61, 92, 154, 574, 577, 605
NdeI CATATG 1 cut(s) 948
NdeII GATC 3 cut(s) 1052, 1222, 1363
NlaIII CATG 4 cut(s) 141, 1042, 1052, 1316
NlaIV GGNNCC 2 cut(s) 495, 978
NmeAIII GCCGAG 1 cut(s) 1205
NmuCI GTSAC 1 cut(s) 1013
NsiI ATGCAT 2 cut(s) 660, 1197
NspI RCATGY 1 cut(s) 1316
PaeI GCATGC 1 cut(s) 1316
PaeR7I CTCGAG 2 cut(s) 49, 56
PaqCI CACCTGC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 518
PdmI GAANNNNTTC 1 cut(s) 1109
PfeI GAWTC 7 cut(s) 688, 760, 908, 955, 1236, 1294, 1388
Pfl23II CGTACG 2 cut(s) 6, 507
PflMI CCANNNNNTGG 1 cut(s) 990
PleI GAGTC 2 cut(s) 260, 370
PpsI GAGTC 2 cut(s) 260, 370
Ppu21I YACGTR 1 cut(s) 511
Psp6I CCWGG 1 cut(s) 865
PspGI CCWGG 1 cut(s) 865
PspLI CGTACG 2 cut(s) 6, 507
PspN4I GGNNCC 2 cut(s) 495, 978
PspPI GGNCC 1 cut(s) 809
PspXI VCTCGAGB 1 cut(s) 56
PsrI GAACNNNNNNTAC 2 cut(s) 380, 412
PstNI CAGNNNCTG 1 cut(s) 1102
RsaI GTAC 7 cut(s) 8, 128, 332, 455, 509, 780, 1045
RsaNI GTAC 7 cut(s) 7, 127, 331, 454, 508, 779, 1044
RseI CAYNNNNRTG 2 cut(s) 1317, 1374
SacII CCGCGG 1 cut(s) 278
SaqAI TTAA 4 cut(s) 27, 792, 846, 1205
Sau3AI GATC 3 cut(s) 1052, 1222, 1363
Sau96I GGNCC 1 cut(s) 809
SchI GAGTC 2 cut(s) 260, 371
ScrFI CCNGG 1 cut(s) 867
SfaNI GCATC 3 cut(s) 1060, 1089, 1204
Sfr274I CTCGAG 2 cut(s) 49, 56
Sfr303I CCGCGG 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 278
SinI GGWCC 1 cut(s) 809
SlaI CTCGAG 2 cut(s) 49, 56
SmiI ATTTAAAT 1 cut(s) 1206
SmiMI CAYNNNNRTG 2 cut(s) 1317, 1374
SmlI CTYRAG 3 cut(s) 49, 56, 245
SmoI CTYRAG 3 cut(s) 49, 56, 245
SphI GCATGC 1 cut(s) 1316
Sse9I AATT 5 cut(s) 356, 391, 886, 915, 1244
SseBI AGGCCT 1 cut(s) 518
SspI AATATT 1 cut(s) 1084
StuI AGGCCT 1 cut(s) 518
StyD4I CCNGG 1 cut(s) 865
SwaI ATTTAAAT 1 cut(s) 1206
TaaI ACNGT 2 cut(s) 131, 216
TaiI ACGT 4 cut(s) 12, 128, 513, 1285
TaqI TCGA 8 cut(s) 50, 57, 152, 365, 375, 1113, 1174, 1231
TasI AATT 5 cut(s) 356, 391, 886, 915, 1244
TatI WGTACW 3 cut(s) 330, 453, 778
TauI GCSGC 9 cut(s) 277, 311, 406, 409, 544, 602, 613, 631, 854
TfiI GAWTC 7 cut(s) 688, 760, 908, 955, 1236, 1294, 1388
Tru1I TTAA 4 cut(s) 27, 792, 846, 1205
Tru9I TTAA 4 cut(s) 27, 792, 846, 1205
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 6 cut(s) 61, 568, 577, 625, 719, 854
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 4 cut(s) 28, 716, 1145, 1286
TspGWI ACGGA 2 cut(s) 440, 495
TspRI CASTG 1 cut(s) 219
Van91I CCANNNNNTGG 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 809
XapI RAATTY 1 cut(s) 1244
XceI RCATGY 1 cut(s) 1316
XcmI CCANNNNNNNNNTGG 1 cut(s) 803
XhoI CTCGAG 2 cut(s) 49, 56
XmnI GAANNNNTTC 1 cut(s) 1109
Zsp2I ATGCAT 2 cut(s) 660, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.