Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009158

Physical Location & Seq

Genomic Coordinates Reverse (-)

540443 .. 552485

Gene Structure 12043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGGCTTCCACAGCAGCCTCCTCATTCTCTCCAACCCCTCCTCATGCTCAGAGTCAGGGCTGGAGAAGACCTCCCAAACTCCATAACCACCACAAGTCCCTCAAAAACCTTCACTTTCTCTTCAGCTCAACCTCCAACTCCAACACCCTCTTCTTCAAGCCCTCACTCTCTTCCTCCACTCATTTCCCTCTCAGCCTCAAACCCACTCCAGACCCAGTTCAGTTCCACCAGCTAAACGACTCCGTCCAAGACAATCTCGTCGAAAACCTCGAGAATTCCATGAAATTCCAGGTACCCATCACCGAATTTCACCTAACTAGGTCTCCAGAATCGTCCCCAAGAATCTTCATCCAAGACCCACCATGGATTGCGTCCCTCTTTTTGAAGGGTATGTTCAAGAAAGCCAATAAAGAACTGAAATTGGAGTCCAAGGAAATCGATAGGAGGAAGTACAATCTGCTGAGGAGGAGGCAGATTAAGGCGGAGACGGAGGCGTGGGAGAAGATGGTGGATGAGTATAAGGACTTGGAGAGAGTAATGCGTGAGAAGAAGCTGGCTCCGAGCTTGCCTTATGTAAAGGCCTTGTTTTTGGGGTGGTTTGAGCCACTGAGGGAGGCCATTGCTAAGGAGCAGAAGGCACAGCAAACCAAGAAGCACAAGGCGGCGTTTGCGCCCCACATTGATTTGTTGCCCGCGGATAAGATGGCCCTGATTGTAATGCATAAGCTGATGGGGTTGGTGATGATGGGGAATCAAGATGGGTGTGTTCAGGTGGTTCAGGCTGCCGTGCACATTGGTATGGCCATAGAGCAGGAGGTTCGGATTCACAGTTTCTTGGAGAAGACCAAAAGTCTTCAGAGAAAGAAGACTGCGGCTGCGGATGAAGATGGTCTGAGCAAGGAGAAGGAGATACTGAGGAAACGTGTTAATGGTTTGATTAGAAGGAAAAGACTGGTTGAGGTGCAAAAGCTACTGAAAAAAGAAGATATGAAGCCCTGGGGTCGGGATACACAGGCTAAGCTGGGAAGTCGGCTGATAGAACTATTAACAGAAACAGCTCATGTACAACCTCCGCTTGACCAATTGGCAGATGGTCCACCTGATGTTAGACCTGCATTTAGGCACAGACTAAAGGCTGCGGCAAAAAGTCCAGGGCAGAAACTTGTGAAGAACTATGGAGTTATTGAATGTGATCCCCTAGTTCTTACCGGACTTGATAAAACTGCTAAACATATGTTGATTCCTTATGTGCCAATGTTGGTGCCTCCCAAAAGATGGAAAGGGTATGACAAGGGTGGGCACTTGTTCCTACCTTCTTATGTCATGCGTACCCATGGATCTAGGAAGCAGGTAGATACAATGAGAAATATTCCTGGAAGACAGATGCAGAAAGTATTTGAGGCCCTCGATATGCTTGGAAGCACCAAATGGCGGATTAATAAAAAGGTTCTTAACGTGGTGGAGAGCATCTGGGCTAGAGGTGGCAACATTGCAGGCCTGGTTGATCGTGAAGATGTTCCTGTACCAGAGAAACCACCATCTGAGGATTTAACAGAAATTCAGGAATGGAGATGGAGTGCAAGAAAAGCAAAGAAGCTTAACCAAGAGAGGCATTCTCAACGATGTGACACTGAACTTAAGCTCTCTGTCGCGCGCAGAATGAAAGACGAGGAAGGCTTTTATTATCCCCACAATCTTGATTTCCGAGGCCGAGCATACCCAATGCATCCCCATTTGAATCATTTGAGTTCTGATCTATGTCGAGGAGTCCTTGAATTTGCTGAAGGGCGGCCATTGGGGAAGTCCGGATTGCGATGGCTGAAGATTCATTTAGCAAACTTGTATTCAGGTGGTGTTGAAAAGCTTTCATACGATGGGCGTATAGCATTCGTGGATAACCACATTGATGATATATTTGATTCAGCAACAAACCCTGTTAATGGAAATCGTTGGTGGTTAACTGCTGAAGATCCTTTACAGTGCCTAGCTGCTTGTATCAATCTATCAGAAGCCTTAAATAGCCCATCACCACATACTGTCATTTCTCATTTACCCATCCATCAGGATGGTTCATGCAATGGCTTACAGCACTATGCAGCCTTGGGGAGAGATACTTTGGAAGCAGCTGCAGTCAACTTAGTTGCTGGAGAGAAACCTGCTGATGTGTATTCAGAAATAGCTGTGAGGGTACATGACATTATGAAGAGAGACAGCGATAAGGACCCAACTACCAGCCCAAATGCTTTATTGGCTAGAGTCTTAGTCGATCAGATTGATCGGAAATTGGTGAAACAGACTGTGATGACTTCAGTATATGGTGTTACTTACGTTGGGGCGCGTGAACAGATAAAAAGAAGATTAGAGGAGAAGGGTCTTATAACTGATGATAGACTATTGTTCACCGCAGCTTGTTATGCTGCTAAAGTGACACTGGCTGCCCTTGGAGAGATTTTCCAAGCTGCACGTGGCATAATGAGCTGGCTTGGTGATTGTGCCAAGGTAATTGCTTCAGAAAATCAGCCTGTTCGTTGGACGACTCCTCTAGGTCTTCCTGTTGTGCAACCATACTGTAAAAGTGAACGACATCTTGTAAGTTTTGACATATTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

870

Amino Acids

98.58

Weight (kDa)

9.47

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	157 - 474	4.9e-75	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	597 - 864	1.7e-106	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24120 AT2G24120
fragaria_vesca	FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 FvH4_1g00590
malus_domestica	MD02G1004800.v1.1
prunus_persica	Prupe.7G266200_v2.0.a1 Prupe.7G266200_v2.0.a1
pyrus_communis	pycom02g00340 pycom15g13310
rosa_chinensis	RchiOBHm_Chr2g0085221
rosa_laevigata	RLG00000015668
rosa_multiflora	Rmu_sc0008510.1_g000002 Rmu_sc0011989.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155550
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG006900 Rh2BG007500 Rh2CG008300 Rh2DG008600
rosa_wichuraiana	Rw2G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2378
AasI	GACNNNNNNGTC	1 cut(s)	257
Acc36I	ACCTGC	3 cut(s)	1120, 1339, 2164
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	2 cut(s)	292, 1261
AccB7I	CCANNNNNTGG	1 cut(s)	1275
AccII	CGCG	4 cut(s)	695, 1652, 1654, 2338
AccIII	TCCGGA	1 cut(s)	1805
AclWI	GGATC	3 cut(s)	1187, 1345, 1964
AcoI	YGGCCR	2 cut(s)	801, 1790
AcsI	RAATTY	5 cut(s)	274, 284, 305, 1557, 1775
AcuI	CTGAAG	7 cut(s)	106, 839, 1803, 1841, 1986, 2292, 2493
AcvI	CACGTG	1 cut(s)	2465
AfaI	GTAC	6 cut(s)	294, 452, 1065, 1330, 1524, 2190
AfiI	CCNNNNNNNGG	4 cut(s)	1002, 1275, 1431, 1940
AflII	CTTAAG	1 cut(s)	1637
AflIII	ACRYGT	1 cut(s)	922
AgsI	TTSAA	7 cut(s)	157, 385, 397, 1187, 1738, 1775, 1859
AhdI	GACNNNNNGTC	1 cut(s)	849
AjnI	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	3 cut(s)	327, 479, 2202
Alw44I	GTGCAC	1 cut(s)	788
AlwI	GGATC	3 cut(s)	1187, 1345, 1964
Ama87I	CYCGRG	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	1805
AoxI	GGCC	8 cut(s)	579, 615, 705, 801, 1401, 1495, 1708, 1790
ApaLI	GTGCAC	1 cut(s)	788
ApoI	RAATTY	5 cut(s)	274, 284, 305, 1557, 1775
AseI	ATTAAT	1 cut(s)	1437
Asp700I	GAANNNNTTC	1 cut(s)	1515
Asp718I	GGTACC	1 cut(s)	292
AspLEI	GCGC	4 cut(s)	673, 1654, 1656, 2338
AspS9I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
AsuHPI	GGTGA	7 cut(s)	292, 302, 751, 2019, 2299, 2392, 2498
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	1094, 2221
BaeGI	GKGCMC	2 cut(s)	792, 1302
BalI	TGGCCA	1 cut(s)	803
BanI	GGYRCC	2 cut(s)	292, 1261
BarI	GAAGNNNNNNTAC	2 cut(s)	1959, 1991
BbrPI	CACGTG	1 cut(s)	2465
BbsI	GAAGAC	6 cut(s)	73, 845, 848, 872, 1384, 2540
Bbv12I	GWGCWC	1 cut(s)	792
BbvCI	CCTCAGC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	770
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BciVI	GTATCC	1 cut(s)	1000
BcoDI	GTCTC	3 cut(s)	327, 479, 2202
BfaI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
BfmI	CTRYAG	1 cut(s)	2127
BfrI	CTTAAG	1 cut(s)	1637
BfuAI	ACCTGC	3 cut(s)	1120, 1339, 2164
BfuI	GTATCC	1 cut(s)	1000
BlpI	GCTNAGC	1 cut(s)	1017
Bme1390I	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
Bme18I	GGWCC	2 cut(s)	1094, 2221
BmeRI	GACNNNNNGTC	1 cut(s)	849
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
BmiI	GGNNCC	4 cut(s)	294, 558, 1263, 2223
BmrFI	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
BmrI	ACTGGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	1374, 1476, 1735
BmuI	ACTGGG	1 cut(s)	209
BpiI	GAAGAC	6 cut(s)	73, 845, 848, 872, 1384, 2540
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 1600, 1632
BpmI	CTGGAG	4 cut(s)	82, 192, 309, 2166
Bpu10I	CCTNAGC	2 cut(s)	461, 624
Bpu1102I	GCTNAGC	1 cut(s)	1017
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	2465
BsaI	GGTCTC	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	1208, 1805
BsaXI	ACNNNNNCTCC	4 cut(s)	307, 337, 1561, 1591
Bsc4I	CCNNNNNNNGG	4 cut(s)	1002, 1275, 1431, 1940
Bse1I	ACTGG	3 cut(s)	215, 957, 2436
Bse3DI	GCAATG	3 cut(s)	618, 1488, 2083
BseAI	TCCGGA	1 cut(s)	1805
BseBI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BseCI	ATCGAT	1 cut(s)	438
BseGI	GGATG	6 cut(s)	348, 517, 886, 1726, 2055, 2071
BseLI	CCNNNNNNNGG	4 cut(s)	1002, 1275, 1431, 1940
BseMI	GCAATG	3 cut(s)	618, 1488, 2083
BseMII	CTCAG	7 cut(s)	62, 205, 452, 599, 884, 905, 1533
BseNI	ACTGG	3 cut(s)	215, 957, 2436
BsePI	GCGCGC	1 cut(s)	1652
BseRI	GAGGAG	7 cut(s)	10, 30, 478, 481, 1779, 2378, 2529
BseSI	GKGCMC	2 cut(s)	792, 1302
BseYI	CCCAGC	1 cut(s)	1021
BsgI	GTGCAG	1 cut(s)	2445
Bsh1236I	CGCG	4 cut(s)	695, 1652, 1654, 2338
BshFI	GGCC	8 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792
BshNI	GGYRCC	2 cut(s)	292, 1261
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	792
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	1209, 1806
BslFI	GGGAC	3 cut(s)	82, 319, 358
BslI	CCNNNNNNNGG	4 cut(s)	1002, 1275, 1431, 1940
BsmAI	GTCTC	3 cut(s)	327, 479, 2202
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	3 cut(s)	82, 319, 358
BsmI	GAATGC	2 cut(s)	1612, 1886
BsnI	GGCC	8 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	792, 1302
Bsp13I	TCCGGA	1 cut(s)	1805
Bsp1407I	TGTACA	1 cut(s)	1063
Bsp143I	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
Bsp1720I	GCTNAGC	1 cut(s)	1017
Bsp19I	CCATGG	2 cut(s)	362, 1333
BspANI	GGCC	8 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792
BspCNI	CTCAG	7 cut(s)	61, 204, 453, 600, 885, 906, 1534
BspDI	ATCGAT	1 cut(s)	438
BspEI	TCCGGA	1 cut(s)	1805
BspFNI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BspLI	GGNNCC	4 cut(s)	294, 558, 1263, 2223
BspMAI	CTGCAG	1 cut(s)	2131
BspMI	ACCTGC	3 cut(s)	1120, 1339, 2164
BspPI	GGATC	3 cut(s)	1187, 1345, 1964
BspT107I	GGYRCC	2 cut(s)	292, 1261
BspTI	CTTAAG	1 cut(s)	1637
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	618, 1488, 2083
BsrGI	TGTACA	1 cut(s)	1063
BsrI	ACTGG	3 cut(s)	215, 957, 2436
BssHII	GCGCGC	1 cut(s)	1652
BssMI	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
BssT1I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Bst2UI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
Bst4CI	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
Bst6I	CTCTTC	4 cut(s)	125, 155, 175, 2198
BstAFI	CTTAAG	1 cut(s)	1637
BstAUI	TGTACA	1 cut(s)	1063
BstBAI	YACGTR	1 cut(s)	2465
BstC8I	GCNNGC	6 cut(s)	555, 566, 693, 1495, 1654, 2480
BstDSI	CCRYGG	3 cut(s)	362, 693, 1333
BstF5I	GGATG	6 cut(s)	348, 517, 886, 1726, 2055, 2071
BstFNI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BstHHI	GCGC	4 cut(s)	673, 1654, 1656, 2338
BstKTI	GATC	7 cut(s)	1195, 1340, 1507, 1756, 1972, 2269, 2278
BstMAI	GTCTC	3 cut(s)	327, 479, 2202
BstMBI	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
BstNI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
BstSCI	CCNGG	5 cut(s)	288, 995, 1150, 1372, 1497
BstSFI	CTRYAG	1 cut(s)	2127
BstSLI	GKGCMC	2 cut(s)	792, 1302
BstUI	CGCG	4 cut(s)	695, 1652, 1654, 2338
BstV2I	GAAGAC	6 cut(s)	73, 845, 848, 872, 1384, 2540
BstX2I	RGATCY	2 cut(s)	1337, 1969
BstXI	CCANNNNNNTGG	1 cut(s)	2066
BstYI	RGATCY	2 cut(s)	1337, 1969
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	1000
BsuRI	GGCC	8 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	3 cut(s)	362, 693, 1333
BtgZI	GCGATG	1 cut(s)	1828
BtsCI	GGATG	6 cut(s)	348, 517, 886, 1726, 2055, 2071
BtsIMutI	CAGTG	4 cut(s)	605, 1629, 1985, 2429
BveI	ACCTGC	3 cut(s)	1120, 1339, 2164
Cac8I	GCNNGC	6 cut(s)	555, 566, 693, 1495, 1654, 2480
CfoI	GCGC	4 cut(s)	673, 1654, 1656, 2338
Cfr13I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
Cfr42I	CCGCGG	1 cut(s)	696
ClaI	ATCGAT	1 cut(s)	438
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	6 cut(s)	293, 451, 1064, 1329, 1523, 2189
CviAII	CATG	8 cut(s)	44, 280, 363, 1061, 1324, 1334, 2073, 2192
CviQI	GTAC	6 cut(s)	293, 451, 1064, 1329, 1523, 2189
DpnI	GATC	7 cut(s)	1194, 1339, 1506, 1755, 1971, 2268, 2277
DpnII	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
DrdI	GACNNNNNNGTC	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	849
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	801, 1790
Eam1104I	CTCTTC	4 cut(s)	125, 155, 175, 2198
Eam1105I	GACNNNNNGTC	1 cut(s)	849
EarI	CTCTTC	4 cut(s)	125, 155, 175, 2198
EciI	GGCGGA	2 cut(s)	497, 1447
Eco130I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Eco147I	AGGCCT	2 cut(s)	581, 1497
Eco31I	GGTCTC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	1094, 2221
Eco57I	CTGAAG	7 cut(s)	106, 839, 1803, 1841, 1986, 2292, 2493
Eco72I	CACGTG	1 cut(s)	2465
Eco88I	CYCGRG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	1402, 2221
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
EcoT14I	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
EcoT22I	ATGCAT	2 cut(s)	723, 1728
ErhI	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	8 cut(s)	47, 283, 366, 1064, 1327, 1337, 2076, 2195
FaqI	GGGAC	3 cut(s)	82, 319, 358
FatI	CATG	8 cut(s)	43, 279, 362, 1060, 1323, 1333, 2072, 2191
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	1233
FokI	GGATG	6 cut(s)	335, 524, 893, 1713, 2042, 2078
FspBI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
GlaI	GCGC	4 cut(s)	672, 1653, 1655, 2337
GsaI	CCCAGC	1 cut(s)	1025
GsuI	CTGGAG	4 cut(s)	82, 192, 309, 2166
HaeIII	GGCC	8 cut(s)	581, 617, 707, 803, 1403, 1497, 1710, 1792
HapII	CCGG	2 cut(s)	1209, 1806
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	4 cut(s)	673, 1654, 1656, 2338
Hin1II	CATG	8 cut(s)	47, 283, 366, 1064, 1327, 1337, 2076, 2195
Hin6I	GCGC	4 cut(s)	671, 1652, 1654, 2336
HinP1I	GCGC	4 cut(s)	671, 1652, 1654, 2336
HincII	GTYRAC	2 cut(s)	1959, 2134
HindII	GTYRAC	2 cut(s)	1959, 2134
HindIII	AAGCTT	2 cut(s)	1595, 1862
HpaI	GTTAAC	1 cut(s)	1959
HpaII	CCGG	2 cut(s)	1209, 1806
HphI	GGTGA	7 cut(s)	292, 302, 751, 2019, 2299, 2392, 2498
Hpy166II	GTNNAC	7 cut(s)	790, 1097, 1959, 2134, 2342, 2400, 2579
Hpy8I	GTNNAC	7 cut(s)	790, 1097, 1959, 2134, 2342, 2400, 2579
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	9 cut(s)	119, 379, 628, 898, 936, 1323, 1667, 1778, 2362
HpyCH4III	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
HpyCH4IV	ACGT	4 cut(s)	922, 1455, 2328, 2464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
HpySE526I	ACGT	4 cut(s)	922, 1455, 2328, 2464
Hsp92II	CATG	8 cut(s)	47, 283, 366, 1064, 1327, 1337, 2076, 2195
HspAI	GCGC	4 cut(s)	671, 1652, 1654, 2336
Kpn2I	TCCGGA	1 cut(s)	1805
KpnI	GGTACC	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	1959
KspI	CCGCGG	1 cut(s)	696
Kzo9I	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
LmnI	GCTCC	2 cut(s)	562, 628
LweI	GCATC	3 cut(s)	1374, 1476, 1735
MaeI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
MaeII	ACGT	4 cut(s)	922, 1455, 2328, 2464
MaeIII	GTNAC	3 cut(s)	1625, 2320, 2425
MalI	GATC	7 cut(s)	1194, 1339, 1506, 1755, 1971, 2268, 2277
MboI	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
MfeI	CAATTG	1 cut(s)	1082
MflI	RGATCY	2 cut(s)	1337, 1969
MhlI	GDGCHC	2 cut(s)	792, 1302
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	9 cut(s)	274, 284, 305, 419, 1082, 1557, 1775, 2282, 2502
MluNI	TGGCCA	1 cut(s)	803
MlyI	GAGTC	6 cut(s)	61, 233, 434, 1776, 2265, 2530
MmeI	TCCRAC	4 cut(s)	56, 159, 165, 2510
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	2 cut(s)	723, 1728
MroI	TCCGGA	1 cut(s)	1805
MroXI	GAANNNNTTC	1 cut(s)	1515
MscI	TGGCCA	1 cut(s)	803
MslI	CAYNNNNRTG	3 cut(s)	797, 1905, 2064
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	2 cut(s)	695, 2126
MspCI	CTTAAG	1 cut(s)	1637
MspI	CCGG	2 cut(s)	1209, 1806
MspR9I	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
MunI	CAATTG	1 cut(s)	1082
Mva1269I	GAATGC	2 cut(s)	1612, 1886
MvaI	CCWGG	5 cut(s)	290, 997, 1152, 1374, 1499
MvnI	CGCG	4 cut(s)	695, 1652, 1654, 2338
MwoI	GCNNNNNNNGC	6 cut(s)	11, 668, 1586, 2249, 2414, 2475
NcoI	CCATGG	2 cut(s)	362, 1333
NdeI	CATATG	1 cut(s)	1233
NdeII	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
NlaIII	CATG	8 cut(s)	47, 283, 366, 1064, 1327, 1337, 2076, 2195
NlaIV	GGNNCC	4 cut(s)	294, 558, 1263, 2223
NmeAIII	GCCGAG	1 cut(s)	1736
NmuCI	GTSAC	2 cut(s)	1625, 2425
NsiI	ATGCAT	2 cut(s)	723, 1728
PaeR7I	CTCGAG	1 cut(s)	269
PasI	CCCWGGG	1 cut(s)	996
PauI	GCGCGC	1 cut(s)	1652
PceI	AGGCCT	2 cut(s)	581, 1497
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	2 cut(s)	1612, 1886
PdmI	GAANNNNTTC	1 cut(s)	1515
PfeI	GAWTC	8 cut(s)	329, 342, 751, 823, 1240, 1738, 1825, 1919
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	1275
PfoI	TCCNGGA	1 cut(s)	1372
PleI	GAGTC	6 cut(s)	60, 233, 433, 1775, 2264, 2530
PmaCI	CACGTG	1 cut(s)	2465
PmlI	CACGTG	1 cut(s)	2465
PpsI	GAGTC	6 cut(s)	60, 233, 433, 1775, 2264, 2530
Ppu21I	YACGTR	1 cut(s)	2465
PpuMI	RGGWCCY	1 cut(s)	2221
PshBI	ATTAAT	1 cut(s)	1437
PsiI	TTATAA	1 cut(s)	2378
Psp5II	RGGWCCY	1 cut(s)	2221
Psp6I	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
PspCI	CACGTG	1 cut(s)	2465
PspFI	CCCAGC	1 cut(s)	1021
PspGI	CCWGG	5 cut(s)	288, 995, 1150, 1372, 1497
PspN4I	GGNNCC	4 cut(s)	294, 558, 1263, 2223
PspPI	GGNCC	4 cut(s)	706, 1094, 1402, 2221
PspPPI	RGGWCCY	1 cut(s)	2221
PstI	CTGCAG	1 cut(s)	2131
PsuI	RGATCY	2 cut(s)	1337, 1969
PsyI	GACNNNGTC	1 cut(s)	242
PteI	GCGCGC	1 cut(s)	1652
PvuII	CAGCTG	1 cut(s)	2126
RsaI	GTAC	6 cut(s)	294, 452, 1065, 1330, 1524, 2190
RsaNI	GTAC	6 cut(s)	293, 451, 1064, 1329, 1523, 2189
RseI	CAYNNNNRTG	3 cut(s)	797, 1905, 2064
SacII	CCGCGG	1 cut(s)	696
Sau3AI	GATC	7 cut(s)	1192, 1337, 1504, 1753, 1969, 2266, 2275
Sau96I	GGNCC	4 cut(s)	706, 1094, 1402, 2221
SchI	GAGTC	6 cut(s)	61, 233, 434, 1776, 2265, 2530
ScrFI	CCNGG	5 cut(s)	290, 997, 1152, 1374, 1499
SduI	GDGCHC	2 cut(s)	792, 1302
SfaNI	GCATC	3 cut(s)	1374, 1476, 1735
SfcI	CTRYAG	1 cut(s)	2127
Sfr274I	CTCGAG	1 cut(s)	269
Sfr303I	CCGCGG	1 cut(s)	696
SgrBI	CCGCGG	1 cut(s)	696
SinI	GGWCC	2 cut(s)	1094, 2221
SlaI	CTCGAG	1 cut(s)	269
SmiMI	CAYNNNNRTG	3 cut(s)	797, 1905, 2064
SmlI	CTYRAG	2 cut(s)	269, 1637
SmoI	CTYRAG	2 cut(s)	269, 1637
Sse9I	AATT	9 cut(s)	274, 284, 305, 419, 1082, 1557, 1775, 2282, 2502
SseBI	AGGCCT	2 cut(s)	581, 1497
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
StuI	AGGCCT	2 cut(s)	581, 1497
StyD4I	CCNGG	5 cut(s)	288, 995, 1150, 1372, 1497
StyI	CCWWGG	6 cut(s)	362, 429, 1333, 2100, 2440, 2496
TaaI	ACNGT	5 cut(s)	830, 1980, 2038, 2299, 2570
TaiI	ACGT	4 cut(s)	925, 1458, 2331, 2467
TaqI	TCGA	6 cut(s)	261, 270, 438, 1407, 1762, 2265
TasI	AATT	9 cut(s)	274, 284, 305, 419, 1082, 1557, 1775, 2282, 2502
TatI	WGTACW	2 cut(s)	450, 1063
TauI	GCSGC	4 cut(s)	665, 875, 1142, 1792
TfiI	GAWTC	8 cut(s)	329, 342, 751, 823, 1240, 1738, 1825, 1919
TscAI	CASTG	4 cut(s)	612, 1636, 1985, 2436
TseFI	GTSAC	2 cut(s)	1625, 2425
Tsp45I	GTSAC	2 cut(s)	1625, 2425
TspDTI	ATGAA	9 cut(s)	296, 337, 897, 1004, 1676, 1817, 1857, 2061, 2216
TspGWI	ACGGA	2 cut(s)	232, 503
TspRI	CASTG	4 cut(s)	612, 1636, 1985, 2436
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	1275
Vha464I	CTTAAG	1 cut(s)	1637
VneI	GTGCAC	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	1094, 2221
VspI	ATTAAT	1 cut(s)	1437
XapI	RAATTY	5 cut(s)	274, 284, 305, 1557, 1775
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1088, 2462
XhoI	CTCGAG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	1515
XspI	CTAG	7 cut(s)	318, 1199, 1341, 1476, 1985, 2253, 2543
Zsp2I	ATGCAT	2 cut(s)	723, 1728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.