Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009158

Physical Location & Seq

Genomic Coordinates Reverse (-)

207199 .. 213943

Gene Structure 6745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGGCTTCCACAGCCTCCTTCTCTCCAAGCCCGCAAGCTCAAACGTACAGCTCCACATGGCGGAAACCGCCGAAGCTGAGCCACAAGTTTCTCTTCAGCTCAGCCTCCAACCGCCTCTTCTTCAAGCCCTCGCTCTCCACTCCTTTCCCCCTCAGCCTCAAGCCCCCTCCCGAACCGGTGCTCTCCCACCTGGTCCGAGACTCCGTCCAAGACAATCTCGTTGAAAATTCGATGAATTTACAGCTACCCATCAGAGAATTTCACCTAATTACGCCCAAGGAATCGGCGCCCAGGATTTTTATACAGGACCCGCCGTGGATTGCCGCACTCTTTCTGAAAGGCATGTACAAGAAGGCCAACCAGGAGTTGAAATTGGAGTCGAAGGAAATCGACCGGCGGAAGTATAATTTGCTTCGGCGGCGGCAGATAAAGGCGGAGACGGAGGCGTGGGAGAGAATGGTGGAGGAGTACAAGGATTTGGAGCGAGTAATGCGGGAGAAGAAGCTGGCTCCGAGCTTGCCGTACGTGAAGACCTTGTTTTTGGGGTGGTTTGAGCCGCTGAGGGAGGCGATTGCGAGGGAGCAGCAGGTGCAGCAAACGAAGAAGCACAAGGCGGCATTTGCACCGCACATTGATTTGCTCCCGCCGGATAAGATGGCGCTGATTGTTATGCATAAGATGATGGGCTTGGTTATGGTGGGGAATCAAGATGGTTGTGTGCAGGTTGTTCAAGCTGCTGTTCATATTGGGATGGCCATTGAGCAGGAGGTTAGGATTCACAGTTTCTTGGAGAAAACCAAAAATTTCCAGAGAAAGAAGACTGCTGTTGCTGATGAAGACAGTCTAACTAAGGAGAAGGAGATACTGCGGAAACGTGTTAATGTTTTAATTAAAAGAAAAAGACTGAGGGAGGTGCAAAAACTCTTGGTAAAAGAAGAATTTAAACCCTGGGGTCGTGATACACAGGCTAAGCTGGGAAGTCGTCTGATAGAATTATTAACAGAAACAGCTTATGTACAACCTCCACTTAACCAGTTGGCTGATGGTCCACCTGATGTTAGACCGGCCTTTAGGCACAGATTTAAGGCTGCAGCAAAAACTCCAGGGCAGAAACTTGTGAAGAATTATGGAGTTATAGAATGTGATCCCCTAGTTCTTACTGGGCTTGATAAAACTGCTAAACATATGTTGATTCCTTATGTGCCAATGTTGGTGCCTCCCAGAAAGTGGAAAGGGTATGATAAGGGTGGTCACTTGTTCCTACCTTCTTATGTCATGCGTACTCATGATCGATCTAGGAAGCAGGTAGATACAATGAGGAATATTTCTGGAAAGCAGATGCAGAAAGTATTTGAGGCCCTAGATATGCTTGGAAGTACCAAATGGAGGGTGAATAAAAAAGTACTTAACGTGGTGGAGAGCATTTGGGCTAGAGGTGGCAACATTGCAGGCCTGGTTGATCGTGAAGATGTTCCAGTACCAGATAAACCACCGCTTGAGGGTTTAACAGAAATTCAGGAATGGAAATGGAGTGTAAGAAAAGCAAAGAAGATTAACCAAGAAAGGCATTCTCTGCGATGTGACACAGAACTTAAGCTCTCTGTTGCTCGCAAGATGAAGGATGAGGAAGGCTTTTATTATCCCCACAATCTTGATTTTCGAGGCCGAGCTTACCCAATGCATCCACATTTAAATCATTTGAGTTATGATCTCTGTCGAGGAGTCCTTGAATTTGCTGAAGGACGACCATTAGGGAAGTCTGGTTTACGTTGGCTGAAGATTCATTTAGCAAACCTTTATGCGGGCGGTGTTGAAAAGCTTTCGTATGAGGAACGGCATGCATTTGTGGATCATCACATTGATGATATATTTGATTCAGCAACAAACCCTGTAAATGGAAACCGATGGTGGTTAACAGCTGAAGATCCTTTACAGTGCCTAGCGGCTTGTATCAATCTGTCAGAAGCGTTAAATAGCCCATCACCACATACTGTCATTTCTCATTTGCCCATCCATCAGGATGGTTCATGCAATGGCTTACAGCACTATGCAGCCTTGGGAAGAGATAGTTTGGAAGCAGCTGCAGTCAACTTAGTAGCTGGAGAGAAACCTGCCGATGTTTACTCAGAAATTGCTGTAAGGGTACATGAGATTATGGAAAGAGACAGCAATAAGGATCCGACTACAAGCCCAAATGCTTTATTAGCCCGAGTCTTAGTTAATCAGATTGACCGGAAATTGGTGAAACAGACTGTCATGACTTCAGTGTATGGAGTTACTTACGTTGGGGCACGCGAACAAATAAAAAGAAGATTAGAGGAGAAGGGTTTTATTTCAGACGATAGACTACTGTTCACTGCAGCTTGCTATGCTGCGAAAGTTACTTTGGCTGCCCTTGGCGAGATATTCCAAGCTGCACGTGGTATAATGGGCTGGCTCGGTGATTGTGCCAAGGTGATTGCTTCAGAAAATCAACCTGTGCGTTGGACTACTCCTCTAGGTCTTCCTGTTGTGCAACCCTACTGTAAAAATGAACGACATCTTATAAGAACATCCCTTCAGGTTTTAGCCTTGCAGCGGGAGAGTAACTCAATAGATGTTAGAAAACAAAGGACTGCATTTCCTCCAAATTTTGTTCACTCACTTGACGGTTCACACATGATGATGACTGCTCTTGCCTGCAGGGACGCGGGCCTGCGTTTTGCAGGGGTACATGACTCCTTCTGGACTCATGCATGTGACGTAGACCAAATGAATGAGATACTTCGGGAAAAGTTTATAGAGCTCTATAGCATGCCGATACTTGAAAATTTGCTAGAAAGCTTCCAAGCATCATATCCAGCGTTGACGTTCCCTCCCCTCCCAGAAAGAGGTGACTTCGACTTGCAAGAGGTTCTGGAATCTCCGTACTTTTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

974

Amino Acids

110.99

Weight (kDa)

9.27

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24120 AT2G24120
fragaria_vesca	FvH4_1g00590 FvH4_1g00590 FvH4_1g00590 FvH4_1g00590
malus_domestica	MD02G1004800.v1.1
prunus_persica	Prupe.7G266200_v2.0.a1 Prupe.7G266200_v2.0.a1
pyrus_communis	pycom02g00340 pycom15g13310
rosa_chinensis	RchiOBHm_Chr2g0085221
rosa_laevigata	RLG00000015668
rosa_multiflora	Rmu_sc0008510.1_g000002 Rmu_sc0011989.1_g000007
rosa_roxburghii	Rroxscaffold_2G00155550
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG006900 Rh2BG007500 Rh2CG008300 Rh2DG008600
rosa_wichuraiana	Rw2G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2546
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	4 cut(s)	577, 712, 1294, 2119
AccB1I	GGYRCC	2 cut(s)	286, 1213
AccB7I	CCANNNNNTGG	1 cut(s)	1227
AccI	GTMKAC	1 cut(s)	2745
AccII	CGCG	2 cut(s)	2295, 2690
AclWI	GGATC	5 cut(s)	1139, 1857, 1919, 2171, 2184
AcoI	YGGCCR	1 cut(s)	753
AcsI	RAATTY	9 cut(s)	226, 235, 257, 802, 938, 1512, 1730, 2629, 2809
AcuI	CTGAAG	7 cut(s)	79, 1758, 1796, 1941, 2247, 2448, 2543
AcvI	CACGTG	1 cut(s)	2420
AcyI	GRCGYC	1 cut(s)	287
AfiI	CCNNNNNNNGG	9 cut(s)	60, 1227, 1386, 1499, 1801, 1895, 2239, 2577, 2870
AflII	CTTAAG	1 cut(s)	1592
AflIII	ACRYGT	1 cut(s)	874
AgeI	ACCGGT	1 cut(s)	175
AgsI	TTSAA	8 cut(s)	124, 224, 370, 731, 1730, 1814, 2807, 2917
AjnI	CCWGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 2369, 2401
Alw21I	GWGCWC	2 cut(s)	183, 2787
Alw26I	GTCTC	3 cut(s)	192, 431, 2157
AlwI	GGATC	5 cut(s)	1139, 1857, 1919, 2171, 2184
Ama87I	CYCGRG	1 cut(s)	2208
AoxI	GGCC	7 cut(s)	354, 753, 1065, 1356, 1450, 1663, 2692
ApoI	RAATTY	9 cut(s)	226, 235, 257, 802, 938, 1512, 1730, 2629, 2809
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AsiGI	ACCGGT	1 cut(s)	175
Asp700I	GAANNNNTTC	1 cut(s)	1470
AspLEI	GCGC	2 cut(s)	289, 661
AspS9I	GGNCC	5 cut(s)	193, 307, 1046, 1357, 2692
AsuHPI	GGTGA	7 cut(s)	254, 1402, 1974, 2254, 2453, 2467, 2885
AvaI	CYCGRG	1 cut(s)	2208
AvaII	GGWCC	3 cut(s)	193, 307, 1046
BaeGI	GKGCMC	1 cut(s)	2293
BalI	TGGCCA	1 cut(s)	755
BamHI	GGATCC	1 cut(s)	2176
BanI	GGYRCC	2 cut(s)	286, 1213
BanII	GRGCYC	1 cut(s)	2787
BarI	GAAGNNNNNNTAC	2 cut(s)	1914, 1946
BbrPI	CACGTG	1 cut(s)	2420
BbsI	GAAGAC	4 cut(s)	536, 824, 843, 2495
Bbv12I	GWGCWC	2 cut(s)	183, 2787
BbvCI	CCTCAGC	2 cut(s)	152, 560
BceAI	ACGGC	3 cut(s)	298, 505, 1850
BciT130I	CCWGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
BcoDI	GTCTC	3 cut(s)	192, 431, 2157
BfaI	CTAG	7 cut(s)	1151, 1296, 1361, 1431, 1940, 2498, 2816
BfmI	CTRYAG	5 cut(s)	1089, 2082, 2358, 2680, 2788
BfoI	RGCGCY	2 cut(s)	290, 662
BfrI	CTTAAG	1 cut(s)	1592
BfuAI	ACCTGC	4 cut(s)	577, 712, 1294, 2119
BlpI	GCTNAGC	3 cut(s)	77, 100, 969
BmcAI	AGTACT	1 cut(s)	1404
Bme1390I	CCNGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
Bme18I	GGWCC	3 cut(s)	193, 307, 1046
BmeT110I	CYCGRG	1 cut(s)	2208
BmgT120I	GGNCC	5 cut(s)	193, 307, 1046, 1357, 2692
BmiI	GGNNCC	5 cut(s)	288, 309, 510, 1215, 2178
BmrFI	CCNGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
BmrI	ACTGGG	1 cut(s)	1170
BmsI	GCATC	3 cut(s)	1329, 1690, 2840
BmuI	ACTGGG	1 cut(s)	1170
BpiI	GAAGAC	4 cut(s)	536, 824, 843, 2495
BplI	GAGNNNNNCTC	2 cut(s)	2573, 2605
BpmI	CTGGAG	2 cut(s)	1086, 2121
Bpu10I	CCTNAGC	2 cut(s)	152, 560
Bpu1102I	GCTNAGC	3 cut(s)	77, 100, 969
BpuEI	CTTGAG	2 cut(s)	143, 1517
Bsa29I	ATCGAT	1 cut(s)	1291
BsaAI	YACGTR	2 cut(s)	526, 2420
BsaHI	GRCGYC	1 cut(s)	287
BsaJI	CCNNGG	9 cut(s)	276, 290, 314, 947, 948, 1103, 2055, 2395, 2451
BsaWI	WCCGGW	2 cut(s)	175, 2232
BsaXI	ACNNNNNCTCC	2 cut(s)	2839, 2869
Bsc4I	CCNNNNNNNGG	9 cut(s)	60, 1227, 1386, 1499, 1801, 1895, 2239, 2577, 2870
Bse118I	RCCGGY	3 cut(s)	175, 393, 1063
Bse1I	ACTGG	3 cut(s)	1033, 1165, 1475
Bse3DI	GCAATG	2 cut(s)	1443, 2038
BseBI	CCWGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
BseCI	ATCGAT	1 cut(s)	1291
BseDI	CCNNGG	9 cut(s)	276, 290, 314, 947, 948, 1103, 2055, 2395, 2451
BseGI	GGATG	6 cut(s)	756, 1627, 1681, 2010, 2026, 2552
BseLI	CCNNNNNNNGG	9 cut(s)	60, 1227, 1386, 1499, 1801, 1895, 2239, 2577, 2870
BseMI	GCAATG	2 cut(s)	1443, 2038
BseMII	CTCAG	6 cut(s)	68, 114, 166, 551, 896, 2139
BseNI	ACTGG	3 cut(s)	1033, 1165, 1475
BseRI	GAGGAG	4 cut(s)	479, 1734, 2333, 2484
BseSI	GKGCMC	1 cut(s)	2293
BseYI	CCCAGC	1 cut(s)	973
BsgI	GTGCAG	3 cut(s)	611, 740, 2400
Bsh1236I	CGCG	2 cut(s)	2295, 2690
Bsh1285I	CGRYCG	1 cut(s)	394
BshFI	GGCC	7 cut(s)	356, 755, 1067, 1358, 1452, 1665, 2694
BshNI	GGYRCC	2 cut(s)	286, 1213
BshTI	ACCGGT	1 cut(s)	175
BshVI	ATCGAT	1 cut(s)	1291
BsiEI	CGRYCG	1 cut(s)	394
BsiHKAI	GWGCWC	2 cut(s)	183, 2787
BsiHKCI	CYCGRG	1 cut(s)	2208
BsiSI	CCGG	5 cut(s)	176, 394, 647, 1064, 2233
BsiWI	CGTACG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	2699
BslI	CCNNNNNNNGG	9 cut(s)	60, 1227, 1386, 1499, 1801, 1895, 2239, 2577, 2870
BsmAI	GTCTC	3 cut(s)	192, 431, 2157
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	2699
BsmI	GAATGC	1 cut(s)	1567
BsnI	GGCC	7 cut(s)	356, 755, 1067, 1358, 1452, 1665, 2694
BsoBI	CYCGRG	1 cut(s)	2208
Bsp1286I	GDGCHC	3 cut(s)	183, 2293, 2787
Bsp1407I	TGTACA	2 cut(s)	345, 1015
Bsp143I	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
Bsp1720I	GCTNAGC	3 cut(s)	77, 100, 969
BspANI	GGCC	7 cut(s)	356, 755, 1067, 1358, 1452, 1665, 2694
BspCNI	CTCAG	6 cut(s)	69, 113, 165, 552, 897, 2138
BspDI	ATCGAT	1 cut(s)	1291
BspFNI	CGCG	2 cut(s)	2295, 2690
BspHI	TCATGA	2 cut(s)	1285, 2256
BspLI	GGNNCC	5 cut(s)	288, 309, 510, 1215, 2178
BspMAI	CTGCAG	4 cut(s)	1093, 2086, 2362, 2684
BspMI	ACCTGC	4 cut(s)	577, 712, 1294, 2119
BspPI	GGATC	5 cut(s)	1139, 1857, 1919, 2171, 2184
BspT107I	GGYRCC	2 cut(s)	286, 1213
BspTI	CTTAAG	1 cut(s)	1592
BsrDI	GCAATG	2 cut(s)	1443, 2038
BsrFI	RCCGGY	3 cut(s)	175, 393, 1063
BsrGI	TGTACA	2 cut(s)	345, 1015
BsrI	ACTGG	3 cut(s)	1033, 1165, 1475
BssAI	RCCGGY	3 cut(s)	175, 393, 1063
BssECI	CCNNGG	9 cut(s)	276, 290, 314, 947, 948, 1103, 2055, 2395, 2451
BssMI	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
BssNI	GRCGYC	1 cut(s)	287
BssT1I	CCWWGG	4 cut(s)	276, 2055, 2395, 2451
Bst2UI	CCWGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
Bst4CI	ACNGT	8 cut(s)	782, 842, 1935, 1993, 2254, 2352, 2525, 2651
Bst6I	CTCTTC	3 cut(s)	98, 122, 2056
BstACI	GRCGYC	1 cut(s)	287
BstAFI	CTTAAG	1 cut(s)	1592
BstAPI	GCANNNNNTGC	2 cut(s)	589, 1573
BstAUI	TGTACA	2 cut(s)	345, 1015
BstBAI	YACGTR	2 cut(s)	526, 2420
BstDSI	CCRYGG	1 cut(s)	314
BstF5I	GGATG	6 cut(s)	756, 1627, 1681, 2010, 2026, 2552
BstFNI	CGCG	2 cut(s)	2295, 2690
BstH2I	RGCGCY	2 cut(s)	290, 662
BstHHI	GCGC	2 cut(s)	289, 661
BstKTI	GATC	8 cut(s)	1147, 1291, 1295, 1462, 1711, 1852, 1927, 2179
BstMAI	GTCTC	3 cut(s)	192, 431, 2157
BstMBI	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
BstMCI	CGRYCG	1 cut(s)	394
BstNI	CCWGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
BstNSI	RCATGY	4 cut(s)	346, 1841, 2739, 2797
BstSCI	CCNGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
BstSFI	CTRYAG	5 cut(s)	1089, 2082, 2358, 2680, 2788
BstSLI	GKGCMC	1 cut(s)	2293
BstUI	CGCG	2 cut(s)	2295, 2690
BstV2I	GAAGAC	4 cut(s)	536, 824, 843, 2495
BstX2I	RGATCY	2 cut(s)	1924, 2176
BstXI	CCANNNNNNTGG	1 cut(s)	2021
BstYI	RGATCY	2 cut(s)	1924, 2176
Bsu15I	ATCGAT	1 cut(s)	1291
BsuRI	GGCC	7 cut(s)	356, 755, 1067, 1358, 1452, 1665, 2694
BsuTUI	ATCGAT	1 cut(s)	1291
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	1591
BtsCI	GGATG	6 cut(s)	756, 1627, 1681, 2010, 2026, 2552
BtsI	GCAGTG	1 cut(s)	2355
BtsIMutI	CAGTG	3 cut(s)	1940, 2271, 2355
BveI	ACCTGC	4 cut(s)	577, 712, 1294, 2119
CciI	TCATGA	2 cut(s)	1285, 2256
CfoI	GCGC	2 cut(s)	289, 661
Cfr10I	RCCGGY	3 cut(s)	175, 393, 1063
Cfr13I	GGNCC	5 cut(s)	193, 307, 1046, 1357, 2692
ClaI	ATCGAT	1 cut(s)	1291
CseI	GACGC	1 cut(s)	2696
CsiI	ACCWGGT	1 cut(s)	189
CspAI	ACCGGT	1 cut(s)	175
DinI	GGCGCC	1 cut(s)	288
DpnI	GATC	8 cut(s)	1146, 1290, 1294, 1461, 1710, 1851, 1926, 2178
DpnII	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
DraI	TTTAAA	2 cut(s)	943, 1692
EaeI	YGGCCR	1 cut(s)	753
Eam1104I	CTCTTC	3 cut(s)	98, 122, 2056
EarI	CTCTTC	3 cut(s)	98, 122, 2056
EciI	GGCGGA	3 cut(s)	76, 412, 449
Ecl136II	GAGCTC	1 cut(s)	2785
Eco130I	CCWWGG	4 cut(s)	276, 2055, 2395, 2451
Eco147I	AGGCCT	1 cut(s)	1452
Eco24I	GRGCYC	1 cut(s)	2787
Eco47I	GGWCC	3 cut(s)	193, 307, 1046
Eco53kI	GAGCTC	1 cut(s)	2785
Eco57I	CTGAAG	7 cut(s)	79, 1758, 1796, 1941, 2247, 2448, 2543
Eco72I	CACGTG	1 cut(s)	2420
Eco88I	CYCGRG	1 cut(s)	2208
EcoICRI	GAGCTC	1 cut(s)	2785
EcoO109I	RGGNCCY	2 cut(s)	307, 1357
EcoRII	CCWGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
EcoT14I	CCWWGG	4 cut(s)	276, 2055, 2395, 2451
EcoT22I	ATGCAT	4 cut(s)	675, 1683, 1843, 2737
EcoT38I	GRGCYC	1 cut(s)	2787
EgeI	GGCGCC	1 cut(s)	288
EheI	GGCGCC	1 cut(s)	288
ErhI	CCWWGG	4 cut(s)	276, 2055, 2395, 2451
Esp3I	CGTCTC	1 cut(s)	431
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	2699
FauI	CCCGC	7 cut(s)	39, 318, 486, 651, 1795, 2571, 2683
FauNDI	CATATG	1 cut(s)	1185
FblI	GTMKAC	1 cut(s)	2745
FokI	GGATG	6 cut(s)	763, 1634, 1668, 1997, 2033, 2539
FriOI	GRGCYC	1 cut(s)	2787
FspBI	CTAG	7 cut(s)	1151, 1296, 1361, 1431, 1940, 2498, 2816
GlaI	GCGC	2 cut(s)	288, 660
GsaI	CCCAGC	1 cut(s)	977
GsuI	CTGGAG	2 cut(s)	1086, 2121
HaeII	RGCGCY	2 cut(s)	290, 662
HaeIII	GGCC	7 cut(s)	356, 755, 1067, 1358, 1452, 1665, 2694
HapII	CCGG	5 cut(s)	176, 394, 647, 1064, 2233
HgaI	GACGC	1 cut(s)	2696
HhaI	GCGC	2 cut(s)	289, 661
Hin1I	GRCGYC	1 cut(s)	287
Hin6I	GCGC	2 cut(s)	287, 659
HinP1I	GCGC	2 cut(s)	287, 659
HincII	GTYRAC	3 cut(s)	1914, 2089, 2847
HindII	GTYRAC	3 cut(s)	1914, 2089, 2847
HindIII	AAGCTT	2 cut(s)	1817, 2821
HpaI	GTTAAC	1 cut(s)	1914
HpaII	CCGG	5 cut(s)	176, 394, 647, 1064, 2233
HphI	GGTGA	7 cut(s)	254, 1402, 1974, 2254, 2453, 2467, 2885
HpyCH4III	ACNGT	8 cut(s)	782, 842, 1935, 1993, 2254, 2352, 2525, 2651
HpyCH4IV	ACGT	9 cut(s)	44, 525, 874, 1410, 1768, 2283, 2419, 2742, 2849
HpySE526I	ACGT	9 cut(s)	44, 525, 874, 1410, 1768, 2283, 2419, 2742, 2849
Hsp92I	GRCGYC	1 cut(s)	287
HspAI	GCGC	2 cut(s)	287, 659
KasI	GGCGCC	1 cut(s)	286
KspAI	GTTAAC	1 cut(s)	1914
Kzo9I	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
LmnI	GCTCC	5 cut(s)	56, 481, 514, 580, 645
LweI	GCATC	3 cut(s)	1329, 1690, 2840
MabI	ACCWGGT	1 cut(s)	189
MaeI	CTAG	7 cut(s)	1151, 1296, 1361, 1431, 1940, 2498, 2816
MaeII	ACGT	9 cut(s)	44, 525, 874, 1410, 1768, 2283, 2419, 2742, 2849
MaeIII	GTNAC	7 cut(s)	1250, 1580, 2275, 2380, 2585, 2738, 2873
MalI	GATC	8 cut(s)	1146, 1290, 1294, 1461, 1710, 1851, 1926, 2178
MboI	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
MflI	RGATCY	2 cut(s)	1924, 2176
MhlI	GDGCHC	3 cut(s)	183, 2293, 2787
MlsI	TGGCCA	1 cut(s)	755
MluNI	TGGCCA	1 cut(s)	755
Mly113I	GGCGCC	1 cut(s)	287
MlyI	GAGTC	6 cut(s)	194, 386, 1731, 2220, 2711, 2722
MmeI	TCCRAC	3 cut(s)	132, 2204, 2465
Mox20I	TGGCCA	1 cut(s)	755
Mph1103I	ATGCAT	4 cut(s)	675, 1683, 1843, 2737
MroXI	GAANNNNTTC	1 cut(s)	1470
MscI	TGGCCA	1 cut(s)	755
MslI	CAYNNNNRTG	4 cut(s)	1860, 2019, 2663, 2736
Msp20I	TGGCCA	1 cut(s)	755
MspA1I	CMGCKG	4 cut(s)	559, 1919, 2081, 2578
MspCI	CTTAAG	1 cut(s)	1592
MspI	CCGG	5 cut(s)	176, 394, 647, 1064, 2233
MspR9I	CCNGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
Mva1269I	GAATGC	1 cut(s)	1567
MvaI	CCWGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
MvnI	CGCG	2 cut(s)	2295, 2690
NarI	GGCGCC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	1185
NdeII	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
NlaIV	GGNNCC	5 cut(s)	288, 309, 510, 1215, 2178
NmeAIII	GCCGAG	1 cut(s)	1691
NmuCI	GTSAC	4 cut(s)	1250, 1580, 2738, 2873
NsiI	ATGCAT	4 cut(s)	675, 1683, 1843, 2737
NspI	RCATGY	4 cut(s)	346, 1841, 2739, 2797
PacI	TTAATTAA	1 cut(s)	891
PaeI	GCATGC	2 cut(s)	1841, 2797
PagI	TCATGA	2 cut(s)	1285, 2256
PaqCI	CACCTGC	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	948
PceI	AGGCCT	1 cut(s)	1452
PctI	GAATGC	1 cut(s)	1567
PdmI	GAANNNNTTC	1 cut(s)	1470
PfeI	GAWTC	7 cut(s)	281, 703, 775, 1192, 1780, 1874, 2900
Pfl23II	CGTACG	1 cut(s)	522
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	1227
PinAI	ACCGGT	1 cut(s)	175
PleI	GAGTC	6 cut(s)	194, 385, 1730, 2219, 2711, 2722
PluTI	GGCGCC	1 cut(s)	290
PmaCI	CACGTG	1 cut(s)	2420
PmlI	CACGTG	1 cut(s)	2420
PpsI	GAGTC	6 cut(s)	194, 385, 1730, 2219, 2711, 2722
Ppu21I	YACGTR	2 cut(s)	526, 2420
PpuMI	RGGWCCY	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	2546
Psp124BI	GAGCTC	1 cut(s)	2787
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
PspCI	CACGTG	1 cut(s)	2420
PspFI	CCCAGC	1 cut(s)	973
PspGI	CCWGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
PspLI	CGTACG	1 cut(s)	522
PspN4I	GGNNCC	5 cut(s)	288, 309, 510, 1215, 2178
PspPI	GGNCC	5 cut(s)	193, 307, 1046, 1357, 2692
PspPPI	RGGWCCY	1 cut(s)	307
PstI	CTGCAG	4 cut(s)	1093, 2086, 2362, 2684
PsuI	RGATCY	2 cut(s)	1924, 2176
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	2 cut(s)	1919, 2081
RseI	CAYNNNNRTG	4 cut(s)	1860, 2019, 2663, 2736
SacI	GAGCTC	1 cut(s)	2787
Sau3AI	GATC	8 cut(s)	1144, 1288, 1292, 1459, 1708, 1849, 1924, 2176
Sau96I	GGNCC	5 cut(s)	193, 307, 1046, 1357, 2692
SbfI	CCTGCAGG	1 cut(s)	2684
ScaI	AGTACT	1 cut(s)	1404
SchI	GAGTC	6 cut(s)	194, 386, 1731, 2220, 2711, 2722
ScrFI	CCNGG	6 cut(s)	191, 292, 362, 949, 1104, 1454
SdaI	CCTGCAGG	1 cut(s)	2684
SduI	GDGCHC	3 cut(s)	183, 2293, 2787
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	1329, 1690, 2840
SfcI	CTRYAG	5 cut(s)	1089, 2082, 2358, 2680, 2788
SfoI	GGCGCC	1 cut(s)	288
SinI	GGWCC	3 cut(s)	193, 307, 1046
SmiI	ATTTAAAT	1 cut(s)	1692
SmiMI	CAYNNNNRTG	4 cut(s)	1860, 2019, 2663, 2736
SmlI	CTYRAG	3 cut(s)	158, 1496, 1592
SmoI	CTYRAG	3 cut(s)	158, 1496, 1592
SphI	GCATGC	2 cut(s)	1841, 2797
Sse8387I	CCTGCAGG	1 cut(s)	2684
SseBI	AGGCCT	1 cut(s)	1452
SspDI	GGCGCC	1 cut(s)	286
SspI	AATATT	1 cut(s)	1324
SspMI	CTAG	7 cut(s)	1151, 1296, 1361, 1431, 1940, 2498, 2816
SstI	GAGCTC	1 cut(s)	2787
StuI	AGGCCT	1 cut(s)	1452
StyD4I	CCNGG	6 cut(s)	189, 290, 360, 947, 1102, 1452
StyI	CCWWGG	4 cut(s)	276, 2055, 2395, 2451
SwaI	ATTTAAAT	1 cut(s)	1692
TaaI	ACNGT	8 cut(s)	782, 842, 1935, 1993, 2254, 2352, 2525, 2651
TaiI	ACGT	9 cut(s)	47, 528, 877, 1413, 1771, 2286, 2422, 2745, 2852
TaqI	TCGA	7 cut(s)	230, 380, 390, 1291, 1660, 1717, 2880
TatI	WGTACW	4 cut(s)	345, 468, 1015, 1402
TauI	GCSGC	6 cut(s)	326, 421, 424, 559, 617, 1946
TfiI	GAWTC	7 cut(s)	281, 703, 775, 1192, 1780, 1874, 2900
TscAI	CASTG	3 cut(s)	1940, 2271, 2362
TseFI	GTSAC	4 cut(s)	1250, 1580, 2738, 2873
Tsp45I	GTSAC	4 cut(s)	1250, 1580, 2738, 2873
TspDTI	ATGAA	8 cut(s)	248, 731, 849, 1631, 1772, 2016, 2547, 2768
TspGWI	ACGGA	3 cut(s)	193, 455, 2895
TspRI	CASTG	3 cut(s)	1940, 2271, 2362
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	1227
Vha464I	CTTAAG	1 cut(s)	1592
VpaK11BI	GGWCC	3 cut(s)	193, 307, 1046
XapI	RAATTY	9 cut(s)	226, 235, 257, 802, 938, 1512, 1730, 2629, 2809
XceI	RCATGY	4 cut(s)	346, 1841, 2739, 2797
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1040, 2417
XmiI	GTMKAC	1 cut(s)	2745
XmnI	GAANNNNTTC	1 cut(s)	1470
XspI	CTAG	7 cut(s)	1151, 1296, 1361, 1431, 1940, 2498, 2816
ZrmI	AGTACT	1 cut(s)	1404
Zsp2I	ATGCAT	4 cut(s)	675, 1683, 1843, 2737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.