FvH4_1g01080

SNARE complex disassembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008823
Physical Location & Seq
Reverse (-)
553643 .. 554107
465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01080.t1

Sequence Viewer

Length: 465 bp
ATGCATCTCAAAGCTAATAAGCAAGCAGAGAAGTCACTGGGTGGTGGATGGAGATTTTTCCAACAAAAATCCAAACTCCAAAAGGCCTCTTACTACGAGGAGGTTAAATCGTGGGCAAATGCCGGGGCAGCATACATCAAATATGCACACTGCAGAAAATCGAAGACTACTACTAGTACTGACGGCGATTATGAAGCCGCATTGCGTTATGTTGATGCTGCACAATGCTACAAGAAAGAGGCCATTGCTTGCTTAGAACAGGCAGCAACTTCCTTTTGTGAAATGGGATTGAATGGTTCTGCTGCTCTACATTATCAAGAAATTGCGGAAATGTACGAATCTCTTCTTGACTTTGAGAAGGCTGAAGAGTTCTTTGGAAGGGCAGCTGAGTTGTTCACAGAACCGATGAGTCGTGACCGCAGCAAAAGGAGAGCTGCTGGATGTGCTAATCGGATTACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000278 GO:0000281 GO:0000910 GO:0001505 GO:0001654 GO:0001671 GO:0001745 GO:0002009 GO:0002090 GO:0002165 GO:0003674 GO:0005483 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006836 GO:0006886 GO:0006887 GO:0006888 GO:0006890 GO:0006891 GO:0006897 GO:0006900 GO:0006901 GO:0006903 GO:0006906 GO:0006914 GO:0006996 GO:0007033 GO:0007049 GO:0007154 GO:0007267 GO:0007268 GO:0007269 GO:0007274 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0008047 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009987 GO:0010646 GO:0010807 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016079 GO:0016082 GO:0016192 GO:0017156 GO:0017157 GO:0017158 GO:0019222 GO:0019898 GO:0019905 GO:0022008 GO:0022402 GO:0022411 GO:0022607 GO:0023051 GO:0023052 GO:0023061 GO:0030054 GO:0030100 GO:0030154 GO:0030182 GO:0030234 GO:0030424 GO:0031090 GO:0031201 GO:0031323 GO:0031410 GO:0031629 GO:0031982 GO:0032386 GO:0032501 GO:0032502 GO:0032781 GO:0032879 GO:0032940 GO:0032984 GO:0032991 GO:0033036 GO:0033267 GO:0034214 GO:0034613 GO:0034622 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035249 GO:0035295 GO:0035494 GO:0036465 GO:0040007 GO:0042144 GO:0042886 GO:0042995 GO:0043005 GO:0043085 GO:0043195 GO:0043209 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043462 GO:0043624 GO:0043679 GO:0043933 GO:0044085 GO:0044087 GO:0044093 GO:0044237 GO:0044248 GO:0044306 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044456 GO:0044463 GO:0044464 GO:0044877 GO:0045026 GO:0045055 GO:0045176 GO:0045184 GO:0045202 GO:0046903 GO:0046907 GO:0046928 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048259 GO:0048280 GO:0048284 GO:0048488 GO:0048489 GO:0048513 GO:0048526 GO:0048563 GO:0048569 GO:0048589 GO:0048592 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050804 GO:0051046 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051301 GO:0051336 GO:0051345 GO:0051588 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0055044 GO:0060255 GO:0060322 GO:0060341 GO:0060429 GO:0060560 GO:0060562 GO:0060589 GO:0060590 GO:0060627 GO:0061024 GO:0061025 GO:0061640 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090114 GO:0090174 GO:0090596 GO:0097458 GO:0097479 GO:0097480 GO:0097576 GO:0097708 GO:0098588 GO:0098657 GO:0098693 GO:0098772 GO:0098793 GO:0098796 GO:0098805 GO:0098916 GO:0099003 GO:0099177 GO:0099500 GO:0099504 GO:0099536 GO:0099537 GO:0099643 GO:0120025 GO:0120038 GO:0140029 GO:0150034 GO:1902803 GO:1903047 GO:1903305 GO:1903530 GO:2000300
KEGG Pathways
Metabolic & Signaling
ko04138 ko04721 map04138 map04721
Pfam Domains
Protein Families
SNAP

Protein Analysis

155

Amino Acids

17.37

Weight (kDa)

8.22

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAP PF14938 5 - 139 1.3e-17 Soluble NSF attachment protein, SNAP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 198, 326, 418
AcuI CTGAAG 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 2 cut(s) 178, 335
AgsI TTSAA 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 3 cut(s) 14, 386, 434
AluI AGCT 3 cut(s) 14, 386, 434
AoxI GGCC 2 cut(s) 84, 240
ApeKI GCWGC 7 cut(s) 128, 218, 263, 302, 383, 420, 434
Asp700I GAANNNNTTC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 170
BbvI GCAGC 7 cut(s) 140, 205, 275, 289, 395, 421, 432
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 124
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 1 cut(s) 151
BisI GCNGC 8 cut(s) 129, 198, 219, 264, 303, 384, 421, 435
BlsI GCNGC 8 cut(s) 130, 199, 220, 265, 304, 385, 422, 436
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 13, 205
BmuI ACTGGG 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 2 cut(s) 200, 243
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 53, 446
BseMI GCAATG 2 cut(s) 200, 243
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 7 cut(s) 140, 205, 275, 289, 395, 421, 432
BsgI GTGCAG 1 cut(s) 204
BshFI GGCC 2 cut(s) 86, 242
BsiSI CCGG 1 cut(s) 123
BsnI GGCC 2 cut(s) 86, 242
BspACI CCGC 3 cut(s) 198, 326, 418
BspANI GGCC 2 cut(s) 86, 242
BspCNI CTCAG 1 cut(s) 379
BspMAI CTGCAG 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 200, 243
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 123
Bst6I CTCTTC 2 cut(s) 348, 360
BstC8I GCNNGC 2 cut(s) 24, 250
BstDEI CTNAG 2 cut(s) 253, 387
BstF5I GGATG 2 cut(s) 53, 446
BstMWI GCNNNNNNNGC 2 cut(s) 128, 443
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 7 cut(s) 140, 205, 275, 289, 395, 421, 432
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 86, 242
BtsCI GGATG 2 cut(s) 53, 446
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 35, 148
Cac8I GCNNGC 2 cut(s) 24, 250
Csp6I GTAC 2 cut(s) 177, 334
CviJI RGCY 7 cut(s) 14, 86, 197, 242, 362, 386, 434
CviKI_1 RGCY 7 cut(s) 14, 86, 197, 242, 362, 386, 434
CviQI GTAC 2 cut(s) 177, 334
DdeI CTNAG 2 cut(s) 253, 387
DraIII CACNNNGTG 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 348, 360
EarI CTCTTC 2 cut(s) 348, 360
Eco147I AGGCCT 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 384
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 4 cut(s) 133, 144, 192, 210
Fnu4HI GCNGC 8 cut(s) 129, 198, 219, 264, 303, 384, 421, 435
FokI GGATG 2 cut(s) 60, 453
Fsp4HI GCNGC 8 cut(s) 129, 198, 219, 264, 303, 384, 421, 435
FspBI CTAG 1 cut(s) 174
GluI GCNGC 8 cut(s) 129, 198, 219, 264, 303, 384, 421, 435
HaeIII GGCC 2 cut(s) 86, 242
HapII CCGG 1 cut(s) 123
HinfI GANTC 2 cut(s) 338, 409
HpaII CCGG 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 3 cut(s) 317, 347, 413
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 352, 372
HpyCH4V TGCA 4 cut(s) 4, 146, 153, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 443
HpyF3I CTNAG 2 cut(s) 253, 387
LpnPI CCDG 4 cut(s) 23, 136, 245, 423
Lsp1109I GCAGC 7 cut(s) 140, 205, 275, 289, 395, 421, 432
LweI GCATC 2 cut(s) 13, 205
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 2 cut(s) 33, 413
MboII GAAGA 3 cut(s) 175, 335, 377
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 4 cut(s) 91, 94, 97, 232
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 128, 443
NciI CCSGG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 33, 413
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 8 cut(s) 130, 199, 220, 265, 304, 385, 422, 436
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PstI CTGCAG 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 2 cut(s) 178, 335
RsaNI GTAC 2 cut(s) 177, 334
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 8 cut(s) 129, 198, 219, 264, 303, 384, 421, 435
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 124
SetI ASST 4 cut(s) 16, 105, 388, 436
SfaNI GCATC 2 cut(s) 13, 205
SfcI CTRYAG 1 cut(s) 151
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 1 cut(s) 321
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 3 cut(s) 198, 326, 418
SspMI CTAG 1 cut(s) 174
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 122
TaqI TCGA 1 cut(s) 161
TasI AATT 1 cut(s) 321
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 42, 155
TseFI GTSAC 2 cut(s) 33, 413
TseI GCWGC 7 cut(s) 128, 218, 263, 302, 383, 420, 434
Tsp45I GTSAC 2 cut(s) 33, 413
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 2 cut(s) 42, 155
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.